Pseudoliparis swirei (Mariana hadal snailfish): 130188527
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Entry
130188527 CDS
T09868
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010
MAPK signaling pathway
pswi04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130188527
04020 Calcium signaling pathway
130188527
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130188527
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
130188527
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
130188527
NCBI-ProteinID:
XP_056262898
LinkDB
All DBs
Position
23:8576697..8671714
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AA seq
1990 aa
AA seq
DB search
MMSEECPVPLGSISLAGPGQSEDYGLAHADDIIEEVGPGDDISIGSDLSTLVLPFPELAP
VVFFCLKQTTCPRNWCIRMVSSPWFERISIMVILLNCVTLGMYQPCENIDCNSDRCQILQ
AFDAFIYIFFALEMVIKMVALGIFGRRCYLGDTWNRLDFFIVMSGMVEYSLDLQNINLSA
IRTVRVLRPLKAINRVPSDHALKIHTSSSNRTCFGHCKDVWNDMRRKLWGIVESKYFSRG
IMIAILINTISMGIEHHNQPEELTNVLEICNIVFTSMFTLEMILKLTAFGFFEYLRNPYN
IFDGIIVIISVCEIIGQADGGLSVLRTFRLLRVIKLVRFMPALRRQLVVLMKTMDNVATF
CMLLMLFIFIFSILGMHIFGCKFSLKTEAGDTVPDRKNFDSLLWAIVTVFQILTQEDWNM
VLYNGMASTSPFAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSYSDDDRSSCNF
EENDKQKDSLHLSDPKISTLTPNGHLDLSALHQGLFPGERLTFALGSRKNSVISLGRANL
EQRAMYPGRSCHNWGHPLPTQPQALWARRSSWNSLGRCRPWSSSPSTSPAFTPTSARPFY
GYGLGALGGVVGGSLRIRGPRASSSPRRHLHHVNQDEEESLLSPPAVAPNSLHLPHPMLP
SHFVPRRDRRALSLELPYLLQVPGSPHPPPLPHLPLPPVTLHAHHRKKSFSEGMVSGGGG
GGGVGSGLDTLGVLGGVHQDCNGKPPLSQLLQLPPRRHTEQAGGAMPTSQLMVDVFPQVN
TRSKDREDLDDDIEYSLCFRIEKMLDAYKPEWCESREEWSVFLFSPQNKFRHICQSIIAH
KLFDYVVLAFIFFNCITVALERPKILQGSLERVFLTISNYIFTAIFVSEMTLKVVSMGMY
VGEQSYLRSSWNILDGFLVFVSLIDIVVSMAGGAKILGVLRVLRLLRTLRPLRVISRAPG
LKLVVETLITSLKPIGNIVLICCAFFIIFGILGVQLFKGKFFYCFGLNIKNITNRSDCLQ
ANYKWIHHKYNFDNLGQALMSLFVLASKDGWVNIMYHGLDAVAVDQQPVTNNNPWMLLYF
ISFLLIVSFFVLNMFVGVVVENFHKCRQHQEVEEAKRREEKRQRRMEKKRRKALKLPYFA
SYGNIRLMIHTLCTNHYLDLIITFIICINVITMSLEHYNQPHSLDLALKYCNYFFTSTFV
LESVLKLTAFGFRRFFKERWNQLDLAIVLLSVMGITLEEIEISAALPINPTIIRIMRVLR
IARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGELVCNEDYP
CEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRECPPDHGTDVDYGCNPILQFIS
PMYFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAQEEAEMDAEIELELAQGTLCCMGAPG
CGGGRGDKGLAPAGPGGTAGGHDRGCGERGEGVRRMLHSAGSAHSGAYSSCDSSQTQYSP
AQESQWLDSVSLLIKDTLEGEMLMIDNLSGSVFHHYSSPPTICRDCKGHPQEQIRMAEVE
QASLKSEQLSDKSSSPALPDDLSLDEQTADQLLAREGKGRCSSDSRSSEEAAGGGSYAGG
HQARPVAQSQVQGAGLACRALGTGMEVETALQELQTHQQHMCSPHWSPGGVSSSSNKDRN
KGGGGASGISPLFHLSAEFFHPAGAAIPAPPRSRSLRLSRGLRLTSPDSWASLRSPGAQS
KMLCSQYPSHSDSSLTTGSSEGSLQTTLEEGLSFSFSPPQNLESPLPLTAPLPLVCPLPL
PEDRPANSSPIQTLRPRPSPSSALTLQATRGHQRSQSSGRGSASPGYTREDSIDPSDEDL
GIGIGSSIGGCGSSQAGNSEHLSETLSSLSLTSLLPPSSLVYPGGGVKKCNSTGSLDQGG
ILLSSRGREGRRELLGLELMDPQGFLANPWAGVLVDTRRGGGRVQIGDGEQGFKGKSSSQ
TTVGPCRKNR
NT seq
5973 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcgaggagtgtcccgttccgctggggagcatctccttagcagggccggggcag
agtgaggactacggcttggcgcacgctgatgacatcatcgaggaagtgggtccaggggat
gacatcagcatcggcagtgacctgagcactctcgtgttgcccttcccggagctggcgcct
gtggtcttcttctgcctcaagcagaccacctgccctcgcaactggtgcatccgcatggtc
tccagcccgtggttcgagaggattagcatcatggtgatcctgctcaactgcgtgacactg
ggcatgtaccagccctgtgagaacatcgactgcaactcggaccgctgccagatcctgcag
gcctttgatgcattcatctacatcttcttcgcattggagatggtgataaagatggtggct
cttgggatcttcgggcgccgctgttatctgggagacacctggaacaggctggacttcttc
atcgtcatgtctgggatggtagagtattcgctggacctgcagaacatcaacctgtcggcc
attcggacggttcgggtccttcggcccctcaaagccatcaacagggtgccaagtgatcac
gcccttaagattcatacctcctcgtccaacaggacatgctttggacattgtaaagacgtc
tggaatgatatgaggaggaaactgtggggcattgtagagagcaagtacttcagcaggggc
ataatgatcgctattctcatcaacactatcagtatgggcatcgagcatcataaccagcca
gaggagctgaccaatgtcctggagatctgcaacattgtcttcaccagcatgttcaccctg
gagatgatcctaaagctgactgcttttggtttctttgagtacctgaggaacccctataac
atctttgatggcatcattgtcatcatcagcgtgtgtgagatcatcggtcaggcagacggc
ggtctgtcagtgctgaggaccttcaggctgctgagggtcattaagctggtgaggttcatg
cctgcgctgaggcggcagctggttgtgctgatgaagactatggacaacgtggccactttc
tgtatgctgcttatgctcttcatcttcatcttcagtatcctgggaatgcatatctttggt
tgtaagttcagtctgaagacggaggcaggagacacagtgcctgacaggaagaactttgac
tctctgctctgggccatcgtcaccgtctttcagattctgactcaggaggactggaacatg
gtgctgtacaatgggatggcatccacctcgccctttgctgctctctactttgtggctctt
atgacatttggaaactatgtgctcttcaatttactggtggccatcttggttgagggtttc
caagcggagggcgatgcgaaccgctcttactcggacgatgacaggtcttcctgtaatttt
gaggagaatgataaacagaaagactctctgcatctctcagacccaaagatctctacactc
accccaaatgggcacctggacttgtccgcacttcaccaaggtctgtttccaggagagagg
ttgacctttgccctcggctccagaaagaacagtgttatttctcttggtcgggccaacttg
gagcaaagggcaatgtatccaggtcgaagttgtcacaactggggtcacccgctgccgacc
cagcctcaggccctgtgggcccgtcgttccagctggaacagcctgggacgatgccgcccc
tggtcctcgtctccctccacgagtcccgccttcacgcccacctccgcaaggcccttctat
ggctatggcctgggggctcttggcggagtagtcggaggaagccttcgtatccggggtccc
cgtgcctcttcatcaccgcgccgccacctccatcatgttaaccaggatgaggaggagtct
ctcctctctcctcccgccgttgctccaaactctcttcaccttcctcatccgatgctgccg
agccactttgtacccaggagggaccgcagagccctatcactggagctgccctacctgctg
caggtcccgggttccccgcaccctccacccctgccacacctcccgctgccccccgtgacg
ctccatgctcaccacaggaagaagagcttctccgagggtatggttagcggtggagggggt
ggtggcggcgtgggcagtgggctcgacactctgggtgtcctaggaggggtacaccaagac
tgtaatgggaagcctcctctgtctcagctcctccagctccctcctagacgccacactgag
caggctggaggggcaatgcccacaagccagctgatggtcgacgtcttcccccaggttaac
acacgcagcaaggaccgggaggacctggacgatgacattgaatatagcttgtgcttccgc
atcgagaagatgttagatgcgtacaaaccagaatggtgtgagagcagagaggaatggtct
gtcttcctgttctccccacagaacaaattcagacatatatgccagtccatcatagcccac
aagctgtttgactatgtggtgttggccttcatcttcttcaactgcattacagtcgctctg
gagaggcccaagatactacagggcagcttggaaagagtctttctcaccatctccaactat
atcttcactgccatctttgtgagcgagatgacactcaaggtggtttccatgggtatgtat
gtgggtgaacagtcttacctgcggagcagctggaacattctggatggcttcctggttttt
gtgtctttgattgacattgtcgtgtccatggcgggtggggccaagatcctgggtgttctg
agagtactgcggctgctcagaacattgcgtcccctcagggtgattagcagagctcccggt
ctgaagctggtggtggagaccctcatcacttccctcaagcccattggcaacattgtcctc
atctgttgtgcgttcttcatcatctttggcattcttggggtgcagctgtttaaaggcaag
ttcttctactgtttcggactcaacatcaaaaacatcacgaacaggtctgactgcctgcaa
gccaactataagtggatccaccacaagtacaactttgacaacttggggcaggctctgatg
tccctgtttgtactggcctccaaggacggctgggtaaacatcatgtatcacggcctggat
gctgtggccgtggaccaacagccggtgaccaacaacaacccgtggatgctgctgtatttc
atctccttcctcctcatcgtcagcttctttgtcctcaacatgtttgttggcgtggtggtg
gagaacttccacaagtgccgccagcaccaggaagtggaagaggccaaaaggcgcgaggag
aagcgtcagcggcgcatggagaagaagaggagaaaagccctgaagctgccctactttgcc
agctacggcaacatacgcctgatgatccacacactgtgcacaaatcactacctggacctc
atcatcaccttcatcatctgcatcaacgtcatcactatgtccttagagcactacaatcaa
cctcattctctggatctcgcactgaagtactgcaactatttcttcacctctacgtttgtg
ctggaatcggtactcaaactcaccgctttcggctttcggcgcttcttcaaggagaggtgg
aaccagttggacctcgccattgtgcttctgtcagtgatgggaatcaccctggaggagatc
gagatcagtgcagcgctgcccatcaaccccactatcatcaggatcatgagagtactgagg
atagcaagagtgctgaagctgctgaagatggcgacagggatgagagccctgctggataca
gtggtccaagccctgcctcaggtgggtaacctgggcctgctcttcatgctgctgtttttc
atctacgccgccttaggagtagagctatttggagaacttgtttgcaatgaagactacccg
tgtgagggtatgagtcgtcacgcgacctttgaaaactttggcatggccttcctaacgctt
tttcaagtctccacgggcgacaactggaatggcatcatgaaggacacgttgagggagtgc
ccaccggaccacggcactgatgtggactatggctgcaacccgatccttcagtttatttcg
cccatgtactttgtctccttcgtgctcaccgcccagttcgtgctcatcaatgtggtggtg
gccgtgctgatgaagcacctggacgactccaacaaggaggcccaagaggaggcggagatg
gatgcagaaattgagctggagctggcccagggcaccctctgttgcatgggcgcccccggc
tgtgggggcgggaggggggacaaaggactggcccctgctggacctggaggcacagcgggg
ggccatgacagaggatgtggagagaggggagaaggagtgaggaggatgcttcattcagca
ggcagtgcacactcgggagcgtacagctcctgtgactccagccaaactcagtactcacct
gcacaagagagccaatggctggacagcgtatctcttctgatcaaggatacactggagggg
gagatgctgatgatcgacaacctctccggttctgtcttccaccactattcttctccccca
accatctgcagggattgcaagggtcatccacaagagcagatccggatggcggaggttgag
caggcgtcgctgaagtcggagcaactgtcagacaagtcgtcatcccccgcgctgccagac
gacctcagcctggacgagcagactgccgaccagctgctggcgcgagagggcaagggaagg
tgcagcagtgactcccgcagctcggaagaggctgcgggtggaggaagttacgcaggaggc
caccaggctcggcccgtggcgcagagccaggtgcagggggcgggcctggcctgccgggcc
ctcggcactggcatggaggtggagaccgcactgcaggagctgcaaacacaccaacagcat
atgtgctcacctcactggagccctggtggcgtttccagcagcagcaacaaggatagaaac
aaaggaggaggcggagccagtggcatttctcctctcttccatctgtctgcagagttcttc
caccctgcaggagcagccatccctgcgcctccccgcagtaggagcttacggttgtcgagg
ggccttaggctgacctcccctgactcctgggcttcactgcgctccccaggagcccaaagc
aagatgctctgttcacagtatccgtcccacagtgactcctccctgacgacaggcagctct
gaggggagcctccagaccaccctggaggaggggctgagcttcagcttctctccgccacag
aacttggagtcccctttgcctttgacagctcccttgccactcgtgtgcccactcccgttg
cccgaagacaggcctgccaattcctccccaatccagaccctgagaccaaggccgagcccc
tcatcggccctcaccctccaggccaccaggggccaccagcgtagccagagcagtggccga
ggtagcgccagcccgggctacacccgtgaagactccatcgacccctcagacgaggacctg
ggcatcggtatcgggtcatcaatcggtggttgtggctccagccaggcgggtaacagcgaa
cacttgtcggagacactgagcagcttgtcgctgacatcgctgctgccgcccagctccctc
gtgtacccaggagggggggtgaagaagtgcaacagcacaggcagcctggaccaggggggg
atactgctgtcgtcccggggccgggagggacgcagagagctcctgggcttggagcttatg
gacccccaaggcttcttggccaacccctgggcgggggtgttggtggacacaagaagagga
ggaggacgagttcaaataggagatggcgagcaagggttcaaaggcaagagctcaagccaa
acaacagtagggccttgtcggaaaaacagatga
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