Pseudoliparis swirei (Mariana hadal snailfish): 130188563
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Entry
130188563 CDS
T09868
Symbol
exosc8
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130188563 (exosc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130188563 (exosc8)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130188563 (exosc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
NYN_YacP
Motif
Other DBs
NCBI-GeneID:
130188563
NCBI-ProteinID:
XP_056262936
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Position
3:complement(5833039..5835834)
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AA seq
277 aa
AA seq
DB search
MAAGFKVAEPLEYHRSFLKENCRPDGRELSEFRTTTLNIGSISTADGSALVKVGNTTVIC
GIKAELTNPTVEAPGKGYIVPNVDLPPLCSSQFRPGPPGEQAQAASQFIADVIESSEVIQ
TEDLCIERGKLCWVLYCDMMCLDYDGNLLDACIVALLAALKNTKLPQVTIGSETSLPEVD
LEKRRGLRIHKHPVATSFGIFDDSILIVDPTAEEESLSTTRLTVVTDDEERLCIVHKPGG
TPLSGETLQECINRATARQREIQKLVDKVVRSVKTAK
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggcggctggtttcaaagttgctgagcctctggagtaccacaggagctttctgaaagaa
aactgtcgtcctgatggacgggagctgtcagagttcagaaccacaacactaaacatcggg
tccatatccacagccgatggctcagccctggtgaaggttggaaacaccacagtcatctgt
ggcatcaaagcggagctgacaaacccaacagtggaggcgccaggtaaaggctacatcgtg
cccaacgtggacctgccgccgctgtgttcctcacagtttcggcccggtccaccaggagag
caggcgcaggcggccagccagttcatcgctgatgtaatagaaagctctgaggtgatacaa
acggaggacttgtgcattgaacgaggaaagctctgctgggtgctctactgcgacatgatg
tgtctcgactacgacgggaacctgttggatgcttgcatcgtcgccctgctggcggccttg
aagaacacaaaactcccacaggtcaccatcggctcagagacgagtttgccggaggtggat
ttagagaagagacgcgggctgcgtattcacaaacatccagtcgccacctcttttggcatt
tttgacgactccatcctgatcgtagaccccacagctgaggaggagagtctgtccaccact
cgcctcactgtggtgacggacgatgaagagcgactctgcattgtacataaaccaggtggg
acgccgctgtcgggagagacgcttcaggagtgcatcaacagagcgacagcgagacagcga
gagatccagaaactcgtcgacaaagtcgtacgcagtgtgaagacggcaaaataa
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