Pseudoliparis swirei (Mariana hadal snailfish): 130188677
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Entry
130188677 CDS
T09868
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013
Nucleocytoplasmic transport
pswi03015
mRNA surveillance pathway
pswi03040
Spliceosome
pswi05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130188677 (alyref)
09122 Translation
03013 Nucleocytoplasmic transport
130188677 (alyref)
03015 mRNA surveillance pathway
130188677 (alyref)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130188677 (alyref)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130188677 (alyref)
03041 Spliceosome [BR:
pswi03041
]
130188677 (alyref)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130188677 (alyref)
TREX complex
130188677 (alyref)
Spliceosome [BR:
pswi03041
]
Complex C
Other components
EJC/TREX
130188677 (alyref)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130188677 (alyref)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_5
RRM_occluded
YHR127W_C
Motif
Other DBs
NCBI-GeneID:
130188677
NCBI-ProteinID:
XP_056263079
LinkDB
All DBs
Position
23:7748087..7751709
Genome browser
AA seq
266 aa
AA seq
DB search
MADKMDMSLDDIIKQNRQQRGGGRGGRGRGRGVSGGGRGGPGRLAVSGGGFGGRGGGSGL
MRGRQSLSRARGRPTPYSRPKQLPEKWQHDMYDNGFSGFSGPAGGAGVETGGKLLVSNLD
FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRTDAHKAMKQYNGIPLDGR
PMNIQLVTSQIDTQRRPMQGLNRGAGGGMNRGRGGGFRGMPRGRAGRGAGGTGGRGRGGR
GGSSKQLSAEELDAQLDAYNASMDTS
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaaatggatatgtctctagacgacattatcaagcagaacaggcagcagaga
ggtggaggacggggcggaagaggccgaggccgcggagtctccggcggtggacgaggaggc
cccgggcggcttgcagtcagcggcggcggattcggaggccgaggcggcggatccgggctc
atgagaggccggcagagcctgagccgcgctagaggcagaccaacgccttacagcaggccc
aaacagcttccagaaaagtggcagcatgacatgtatgacaacggctttagcggcttcagt
ggccctgctggaggagccggtgtggagactggagggaagctccttgtctctaatctggat
ttcggggtctcggatgctgacattcaggaactttttgctgaatttgggactctaaaaaaa
gctgcagttcattacgacagatcaggaagaagcctggggacagcagatgtccactttgaa
aggaggacagatgcccacaaggccatgaaacagtacaatggcatccctcttgatgggcgg
cctatgaacatacagctcgtcacatcacagattgatacacagaggcggcctatgcagggt
ctgaacaggggggctggaggaggcatgaacagaggccgtggggggggcttcagaggcatg
ccgagaggccgcgcaggacgtggggcaggcggtactggaggaagaggtcggggtggtcgt
ggcgggagtagcaaacagctatcggcagaagaacttgacgcacagttagacgcctacaat
gccagtatggacaccagctaa
DBGET
integrated database retrieval system
