Pseudoliparis swirei (Mariana hadal snailfish): 130188743
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Entry
130188743 CDS
T09868
Symbol
shank1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
SAM_1
Ank
Ank_4
SH3_2
SAM_2
Ank_3
PDZ_6
PDZ
Ank_5
SH3_9
FERM_f0
SH3_1
Motif
Other DBs
NCBI-GeneID:
130188743
NCBI-ProteinID:
XP_056263187
LinkDB
All DBs
Position
23:7091368..7146987
Genome browser
AA seq
2415 aa
AA seq
DB search
MTMPFSPLSSDEEQQKMLGNNRHLYPGAEDEEEEEEEEGEGMEEDERDEDQEEEENGELE
GEEEDNGEEMEVRRGGLSRVGRGEGHRQPGKLAGRPAGDRQIRSGNPGHATNPYASNPGP
THQQPANHVQQQPQQQRRLKERSTGTVSSEDTHIAMMVFRIGIPDIKQTKCLRFNPDATV
WKAKQQVLCSLTESLRDVLNYGLFQPATDGHDAMFLEEERLLRDYPQSFEKGVPYLEFRY
KTRVYKQTNLDEKQLAKLHTKASLKKFMDYIQTSAVDKMVKFLDKGLDPNYQDADTGETA
LSLAVQCEPGGGEAIRVLVEGGAHIDFRAKDGLTPVHKAVRGHRHTALLVLLSLGASVDY
KDRRGLTPLYHTVLTGGDTSCCETLLYHHAKLGIRDENGWDETHQACQHGNSQHLEHLLF
YGADSSSQNASGNTALHICALYNKESSSRILLYRGTNKDTKNNNGQTPFQVAVMSGHFEL
GEIIKNHRDTDVVPFVESPKYAPQRRESTRSLAIPHPHPFLRANSDSSMNLPEWMAGSNT
TGPNIVSVQGYKHTGTLRSSSSPRGARTRSPSRGRIGDKEDRSRQSQRQGPAPASTAGPT
AGQRRRLYSAVPGRVFVATRSHSAQGEREISFSKGDRVKVLSIGEGGYWEGTVRGRTGWF
PSDCVEEVMLRSQENRSESRGERAKRLFRHYTVGSYDSFDAPSDYIIKEKSVLLQKKESE
GFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVK
VGHRQVVNMIRQGGNSLMVKVVMVTRNSDLEEGSRKKIPQQSKRLSTPAIALRSKSMTSE
LEEMVERAATPWKKKSEFESTQVTEKKRTVYQMALNKLDEILAAAQQTISTNEAPGTRGQ
GPKRDRGRSFYGNEPSCGDQSGMGTMSSGLGLGYDRGQYASGHGPQHGMRRQKSIGAPDE
ERQFLNPPAVKFARSLSVPGPDEIPPPPTTAPPEPPFSSAPPLGWRAKSSQQPVSVSQST
ATSAHYQPYAQSAQFTHGGRAAGSSTGPGGGAVDHATPYAHAAVHTALSRTASRKVAYSG
EPVGTGPGAGGGAKTAGLRRGYTTAIPPSSIATVVPQQQQTAQSQPPRTDRSAPVAGAGG
PKGGTRRGKGPLTKQSKVEDLRLSQGTLGGKGSVEKSSIPIPTIIVKAPSTSSSQGSSVE
ADPPASGETDDAKTPRGPPPSTPAPQPPAPPSVPAPPPPPPSSRAQENPDFTSQFGAAVV
GAARRDRERLHDARRKSASSFMSAEEDASLGSDGATRTQVAQQQLGTQESASTRLRPSKS
IDEGMFSGDTFIHHTRSMPPSFGLPEYSSPALDYQPQSMPTDLYTSAGRQAAPSSTTTFI
HPLTGKALDPTSPLGLALAARERALRDDSRLRRGSDHHFARQMSSGVFPSSTVNSPPVSS
AAQSSSSSYLVTSSSLAGTAAAAGRPPSPRILRGGGSVWSEEGSGGEREREGGGGGAREG
LRVRFSEDKTVHKHHYQPQPYQPTYKERELERSRERERERERERERDTEREGYMRRAEQA
ADSSAQQGAHPQQPKRPSFLRMESQADAYIVSLTPPSPPATSTTGSAGMMVLPPPAPSID
ADDGFVFADPLPPPLQFANSFDRGTGGPSGPSGYSQHGTHRNSLSRQQHVSAPPPPPPPP
PTREPFASGFPAHTPLASPQAGDSTASSLTSYDSEVANLTQSAPSPSQTSPNPPPPPHSP
STLQPTSTTGPPPLPSVSPPPPPRPYHRPFSMSHPHHLYNSSHTSGRSSPTPPPRTVTPP
RGYRGPPAPSSTAANAAPLRRPFSHATTSSCAATTAAAATTCTSTQLYHERTHATSSSNI
AGGRRAAEYHRPHPATRKGESLETVVDSGIEELDSRSSSDHHLDRIRLDRGERGRFGGGG
GGGTGESERGGDFMESYMNYLDGQTFEMQNATAAASTYPKSNRFREGGRASDLHRQTSTA
PASFHSHRRREEQEEDEDGGGESSRDAYAIRDMQSLGRPISPYFDRPRTPEMKPLWGEGQ
MSADQLEGKKIYPPASSMKPSIINELSSKLQQRTKESWSSQRPLGRHRHRFSEDSASALS
PPITRSQSPSPISLSQPSLSPSPTPSSQYPNWGRSPSPQPPAVSQPPRAQSPISPTSYAP
YPTSPKHRPVYRTKALEFQFIPSRETRKAESHMFQRRRAPSPLISPAERPKPGPPRPSSL
PLLPTTPLYSAMYDLQGSNTPPSPANPLGDPYFSPSPPLFAPSGAPPPPNSALLVSRSLS
PTHFLSGTSSPPLHPLPPPTCLSYPHLPPPSPTKPFASKPLPYWTKYDVADWLGYLNLGE
HRERFLDNEIDGTHLPSLTKDDYLDLGVTRVGHRMNIERALRTIMDRLSSSPFPILVLSP
RDGQTERRRDDGSRS
NT seq
7248 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgccgttcagccccctgtccagcgacgaggagcaacaaaagatgctgggaaat
aaccgacatctctatccaggggcagaggacgaggaggaggaggaggaagaggagggggag
ggcatggaagaggatgagcgtgatgaggaccaggaggaggaggagaacggcgagctggaa
ggggaggaggaagacaacggggaggagatggaggtcaggcgaggtggcctgtcgcgggtg
ggcagaggtgagggacacaggcagccaggtaaactggccggaagacccgctggggacaga
cagattcggtcagggaacccgggacacgccacaaacccctatgcctctaatcccggaccc
acacaccaacagccggccaatcacgtacagcagcagccgcagcagcagaggaggctgaag
gagcgcagcaccggcaccgtgtcatctgaggacacccacatcgcgatgatggtgtttcgc
atcggcatcccagacataaagcaaacgaaatgtttgcggttcaacccggatgccacggtg
tggaaggccaagcagcaggtcctgtgctccctcaccgaatctctgcgggacgtcctgaac
tatggtctgttccagcccgccacggacggccatgatgccatgttcctggaggaggagagg
ctgctccgagactacccacagtcctttgagaaaggggtaccatatttagagtttcgatac
aaaaccagggtgtacaaacagaccaatctggatgagaagcaactggccaaactgcacact
aaggcgagcctgaagaaattcatggattatattcaaaccagcgctgtggacaagatggtc
aagttcttagacaaaggcctcgatcccaactaccaggatgctgacaccggcgagactgct
ctgtccttggcggtgcagtgtgagccgggtggaggtgaggctatccgggtcctggtggaa
ggaggtgctcacattgacttccgcgccaaagatggactcacgcccgtccacaaagctgtg
cgaggccaccgccatacggcccttctggtcctactgtctctcggtgcatctgtggactac
aaggaccggagggggctgacgccgctctaccacactgtgctgacagggggcgacacctcc
tgctgcgaaacactgctttaccaccacgccaaactaggcatcagggacgagaacggctgg
gacgagacacatcaggcctgtcagcatggtaactcgcagcatctggagcacctcctcttc
tatggggcagattcttcctcccagaatgcctctggaaacactgccttgcacatctgtgct
ttgtacaacaaggaaagctcttcacgaattctgctctatcggggaacaaataaagacaca
aagaacaacaatgggcagaccccctttcaggtggctgttatgtccggccattttgagctg
ggagaaattatcaaaaaccaccgggatacagatgtggttccctttgtggagtctccaaag
tacgccccccagaggcgggagagcacccggagcctggcaataccccacccgcatcctttc
ctccgggccaacagtgacagcagcatgaacttgcccgaatggatggcagggtccaacacc
acagggcccaacatcgtctcggtgcagggctacaagcacacaggaaccctgcggagctcc
agcagtcccagaggggcgaggacgcgttctccgtcccggggaaggatcggagacaaggag
gaccggagcaggcagagtcagagacaggggcctgctcctgccagcacagctggaccgact
gcaggtcagcggaggcgcctctacagcgctgtcccgggtcgagtctttgtagccactcga
tcgcactcggcccagggagagcgcgaaatcagcttcagcaagggagacagggtcaaagtg
ttgagcattggcgagggcgggtactgggagggaacggtcaggggccgcacaggttggttc
ccctctgactgtgtggaggaagtgatgcttcgaagccaagagaaccgatcagagagccgt
ggagagcgagccaaaaggctttttcgccattacactgtggggtcctatgacagctttgac
gctcccagtgactatataatcaaggagaagtcagtgcttctgcagaaaaaagagagcgag
ggtttcggctttgtgttgcgaggggccaaagctcagactcctatcgaggagttcacaccg
accccggccttccccgccctgcagtacctggagtcggtggacgagggaggcgtggcctgg
agagccggtctcaggatgggggatttcctgatcgaggtcaatggtcagaatgtggtgaag
gtgggtcaccgacaggtcgtcaacatgatccgacaaggtggcaacagcctcatggtcaag
gttgtcatggtaacccgcaactccgacctggaggagggttcgaggaagaaaatcccccag
cagagcaaacggctgagcactccggctatcgcactaagatccaaatccatgacttctgaa
ctggaggagatggtggagagagctgctaccccttggaaaaaaaaatcagaattcgaatcc
acacaagttacagagaagaagaggacagtctatcagatggctttgaataaactggatgaa
atacttgcagcagctcagcagaccatcagcaccaatgaggcgccagggacacggggacag
gggccaaaaagagacagaggacgaagtttctatggcaatgagccaagctgcggggatcag
tccgggatggggacgatgtcgtcggggttgggcctcggctacgaccgtggccagtacgcc
tcgggtcacggcccacagcacggtatgcggcggcagaaatccatcggggcgcctgacgag
gagaggcagttcctgaaccctccggccgtgaagttcgctcgcagtctgtcggtgcccggc
ccagacgaaatccctcccccccccaccacggctccaccggagcctccgttctcctctgct
ccgccactcggttggagagcaaagtcgtcccagcagcctgtctccgtgtcccagtccacc
gccacatctgcccactaccagccctacgcccagtcagcgcagttcacccatgggggccgg
gcggccggttcgagcaccggccccggtggcggagcggtggaccacgcaaccccgtatgca
cacgcagccgtccacactgctctaagcaggactgcttcgcggaaggtggcctactccggg
gagcctgttggcaccggcccaggggctggtggaggggccaagacggcagggctcaggaga
ggctacaccaccgctatccccccatccagcattgccactgtcgtgccccagcaacaacaa
accgcccagagccaacccccgcgtacagaccgcagtgcgcctgtggctggagccggcggt
cccaaaggaggcacccggagaggtaagggacccttgacgaaacaatccaaggtcgaggac
ctacgcctgagccaggggaccctgggaggaaaaggctcagtggagaaaagctccatcccc
atccccaccattatagtcaaggccccttcaaccagcagcagccagggcagcagcgtggag
gccgaccctcctgcatcaggagagacggatgacgccaagacgccacgcggccctcccccc
tccactcccgccccacagcccccggcgccgccgtccgtcccggcgccgccgccgccgcct
ccgtcctcgcgagcccaggagaacccggacttcactagccagttcggggcggccgtcgtc
ggcgcggctcggcgagacagggagcggctgcacgacgcgcgcaggaagagcgcctcctcg
ttcatgtccgccgaggaggacgcgagtctcggcagcgacggagcaacgaggactcaagtg
gcccagcagcagctcggcacacaggaaagtgcatccacgcggctgcgcccgtccaagtcc
atcgacgagggcatgttctccggggacactttcatccatcacacccgcagcatgcctccc
tcctttggccttcccgagtactcctcgcccgccctggactatcagcctcagtctatgccg
actgacttgtacacatcggcaggcaggcaggcggcgccctccagcacaaccaccttcatc
caccctctcacaggaaaggcccttgaccccacatcgccactcggcctcgccctggccgcc
agagagcgtgctctgagagacgacagcaggttaaggaggggatcagatcaccacttcgcc
cgccagatgtcgagcggggtgtttccttcgtcgaccgtcaactctccgccggtgtcgtcc
gccgcccagtcctccagctcctcctacctggtgacctcgtcttctctggccggtaccgca
gccgccgccggtcgcccgccgtcgcccaggatcctgagaggaggcgggagcgtgtggagc
gaggaaggcagcggaggagagagggagcgcgaaggaggaggagggggggctcgcgagggg
ctcagagttcgcttctcggaggacaaaacggtccacaagcaccactaccagcctcagcca
tatcaaccgacctacaaggagcgggagctggagaggtcgagggagcgcgagagggagaga
gagagggagagagagagggacacagagagagagggttacatgaggcgggccgagcaagcc
gccgacagctctgctcagcagggggcccaccctcagcagcccaaaagaccctctttcctc
cggatggaaagtcaagccgatgcctatattgtgtccctcacccctccctcgcctccagcg
accagcactactgggagcgctggcatgatggtccttcctccccccgccccctcaattgac
gcagacgacgggtttgtcttcgcagaccctctcccgcctccgttgcagtttgccaacagc
ttcgaccggggaaccgggggaccctcgggaccctcggggtactcgcagcacgggacgcac
cggaacagcctgtcgcgccaacagcacgtctcggcccctccccctccgccccctccaccc
cccacaagagaacccttcgcgagcggctttcccgctcacacccccctggcttctccccag
gccggagactccaccgcctccagcctcacgtcgtacgacagcgaggtggccaacctgact
cagtcggccccctccccctcccagacgtcgcccaaccccccgccccccccccactcgccc
tcgacactgcagcccacctcgacgacgggacctccgcctctcccgtcggtctccccaccg
cctcccccccgaccctatcacagacccttctccatgtcccacccccaccacctgtacaac
agctctcatacgtctgggcgctcctcccccacgcctcccccccgcacagtcacaccgccc
cgtggctaccgcggccccccggctccttcctccaccgctgccaacgctgctccgctcagg
cgccctttctcacacgccacgacctcgagctgtgccgcgacgaccgccgccgccgccacg
acgtgcacctccactcagctctaccacgagcgcacacatgcaacatcctccagcaatatc
gcgggcggccgcagggcagcggagtaccaccgtcctcaccctgcgaccaggaaaggagag
tccctggaaacggtcgtggactctggaatcgaagagctggacagccgtagcagcagcgac
caccacctggaccgcatcaggctcgaccgcggggagagagggcggtttggagggggaggc
ggcggcgggacaggggaatcggaaaggggaggagattttatggagtcttacatgaactac
ctggacggacaaacttttgagatgcagaatgccacagcggcagcctccacctacccgaaa
tcgaaccggttcagagagggagggcgcgccagtgatctacacagacagacgagcaccgct
cccgcatcctttcactcccacaggcggagggaggagcaggaagaggacgaggacggcggg
ggggaaagcagccgcgacgcctacgccatcagggacatgcagagtttgggacgtcccatc
tcgccgtacttcgatcgcccgcgcactccggagatgaagcctctctggggcgaggggcag
atgtcggcggaccagttggaggggaaaaagatttaccctcccgcatccagtatgaagccc
agcatcataaatgagctgagcagtaaactgcagcagagaaccaaggagagctggagcagc
cagagaccgctgggcagacacaggcacaggttttcagaagactcggcctcggctctgagc
ccccccataactcgatcccagtcgccatctcccatttcattatcgcagccgtcgttgtcc
ccatcccccaccccctcctcccagtaccccaactgggggagatccccatctcctcagcct
ccagccgtgtctcagcctccacgtgcacaatccccgatttccccgacgtcttacgcccct
taccccacttccccgaaacacagacctgtctaccgaaccaaagccctcgagttccagttc
atccccagtcgcgagacccggaaagcagaatcacacatgttccagcgaaggagagcgccc
agccctctcatctccccggcagagaggcccaagccgggcccaccgcggccatcgtccctc
ccgctcctccccaccacgcctctttacagcgcaatgtacgacctccagggttccaacacg
ccgccgtcacctgcgaaccctctcggggatccttacttctcaccctctcctcccttgttt
gcgccctccggtgccccacctcctcccaactccgccttactcgtctctcgatccctctct
ccaactcacttcctgtccgggacgtcctctccgcccctgcaccctctccctccacccaca
tgcctgagttacccccacctaccgccaccttccccgacaaagcctttcgcctccaagccg
ctgccctactggaccaagtatgacgtcgcagactggctgggatacctgaacctgggggag
cacagagagcggttcctggacaacgagattgacggcacccatctgccctccctcaccaag
gacgactacctggacctgggcgtgacgcgcgtcggccaccggatgaacatcgagcgggcc
ctgaggaccatcatggacaggctgtccagtagcccatttcccattctggttctctcacct
cgggatggacagactgagaggaggagggacgacgggagccggagctga
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