Pseudoliparis swirei (Mariana hadal snailfish): 130188794
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Entry
130188794 CDS
T09868
Name
(RefSeq) transcription factor Sox-9-like
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130188794
Transcription factors [BR:
pswi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
130188794
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
130188794
NCBI-ProteinID:
XP_056263264
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All DBs
Position
23:complement(11882511..11886294)
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AA seq
479 aa
AA seq
DB search
MNLLDPYLKMTEEQEKCHSDAPSPSMSEDSAGSPCPSGSGSDTENTRPSDNHLLLGPDFK
KEGEEDKFPVCIRDAVSQVLKGYDWTLVPMPVRVNGSSKSKPHVKRPMNAFMVWAQAARR
KLADQYPHLHNAELSKTLGKLWRLLNETEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKS
VKNGQNDPEDGEQTHISPTAIFKVLQQVDSPASSLGEVHSPGEHSGQSQGPPTPPTTPKT
ELPSSKVELKREGRPIQEGTSRQLNIDFGAVDIGELSSEVISNMGSFDVDEFDQYLPPHS
HAGVTGAAQAGYPSSYGLSNSSVSHAANAGAHAWMSKQQQQQHSLTTLGGGGEQGQQGQQ
RTTQIKTEQLSPSHYSEQQGSPQHVTYGSFNLQHYSTSSYPSITRAQYDYSDHQGGANSY
YSHAAGQGSGLYSSFGYMSPSQRPMYTPIADTTGVPSVPQTHSPQQWEQQPIYTQLSRP
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcctcgacccttacctgaagatgacagaagaacaggagaagtgtcactctgac
gctcccagccccagcatgtccgaggactccgcaggctcaccgtgcccgtccgggtccggt
tcggacactgagaacacccggccgtccgacaaccacctcctcttggggccagactttaag
aaagagggcgaggaagacaagtttcccgtgtgcatcagagatgcggtgtcccaggtgttg
aagggctacgactggacgctggtgcccatgccagtgcgcgtcaacggctccagtaaaagt
aaacctcacgtcaaaagacccatgaatgcgttcatggtctgggctcaagccgcacggagg
aagctggccgaccaatacccgcatttgcacaacgcagaactcagcaaaaccctgggcaaa
ctttggagattgctcaacgaaacagagaagcgcccgtttgtggaagaagctgagcgtttg
agagtgcagcacaaaaaggaccaccccgactacaaatatcagccaaggcggagaaagtct
gtcaagaacgggcaaaacgaccccgaggacggcgagcaaacccacatctctccaactgcg
atctttaaggtgctgcagcaggtcgattctccagcttcaagtttgggcgaggtgcattcc
ccaggagaacattcaggtcagtcccagggcccaccaacacccccaaccacccccaagaca
gaactcccctccagcaaggttgaactgaagcgcgagggtcgccctatacaggagggcacc
agtcgccagctcaacatcgactttggagctgtggacattggcgagctgagcagcgaggtc
atatccaacatgggcagcttcgatgtcgatgagtttgatcagtacctgccacctcacagc
catgctggagtgacgggagcagcccaggctggctaccccagcagctatggcctcagcaac
tcctcggtcagccatgcggccaatgccggggcccacgcctggatgtccaagcagcagcag
cagcagcactctctgaccaccctaggtggaggaggagagcaaggccaacagggtcaacag
agaaccacccagatcaagacagagcagctgagccccagccactacagtgagcagcagggc
tccccgcagcacgtcacctatgggtccttcaacctgcagcactacagcacctcctcttac
ccctcaatcacaagagcacagtatgactattcagaccatcaaggtggtgccaactcctac
tacagccatgcagctggccagggctccggcctgtactccagcttcggctacatgagtccc
agccagaggccgatgtacaccccgatcgccgacaccaccggggtgccctctgtgccgcag
acccacagtccgcagcagtgggagcagcagcccatttacacacagctctccaggccttga
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