Pseudoliparis swirei (Mariana hadal snailfish): 130188826
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Entry
130188826 CDS
T09868
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130188826 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130188826 (xab2)
03041 Spliceosome [BR:
pswi03041
]
130188826 (xab2)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130188826 (xab2)
Spliceosome [BR:
pswi03041
]
Complex B
Other components
Prp19-related factors
130188826 (xab2)
Complex C
130188826 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_16
TPR_15
ARM_TT21_C
NRDE-2
ARM_TT21
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
130188826
NCBI-ProteinID:
XP_056263317
LinkDB
All DBs
Position
23:13787453..13794556
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLNGKPDVFFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTEPGYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLCFARNLPLPETAIRVFRRYLKLSPENAEEYID
YLRTVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKNEDEDIDMELRLARFEELIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNPRQIINTYTEAVQTIDPLKATGKPHSLWVSFAKYYEENEQLEDARTIFEKATKVH
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEAVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVDTGERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCQRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQAWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMTSQMMKATTSSTGTVSDLAPGQMGLDDMKMLEQKAQLLAAEAEQ
DKPTPKEKILFVRSDTSRSELAELAKRANPDEIDIDDEDDDEENPGPEEVQLEQKSVPTA
VFGGLKED
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccctcactaaacggaaaacccgatgtcttctttgaggacgatgatctgccatatgaa
gaggagatcatcagaaacccgtactcggtcaagtgctggatgcggtacatcgagttcaaa
cagaatggagccaaatccaccctgaacatgatttatgagcgcgctctgaaagagctgccc
ggcagctacaagctgtggtacaattatctgagagagcgacggaaacaagtaaaggggaaa
tgtgtcactgaaccaggctatgaagaggtcaataattgccatgaaagggcattggtgttc
atgcataagatgcccagaatatggcttgattactgccagttccttgtatctcaatgcaag
atcacaagaagtcggcaaacatttgaccgtgcactcagagctcttcctgttactcagcac
ccgcgtatctggcctctgtatctctgctttgcccgtaaccttcccctgcctgagaccgca
atccgagtgttccgcaggtaccttaagctttctccagaaaatgcagaggaatacatagac
tacttacggactgttggccgcttggatgaagcagctgtgcgactggcagctgttgtcaat
gatgaaagctttgtgtccaaagagggcaaatctaactatcaactgtggcatgagctgtgc
gacctgatctcccagaaccctgataaagtgacttcactcaatgttggggccatcatccga
ggaggcctcactcgcttcacagatcaacttggaaaactctggtgctctttagctgactat
tacattagaagtggtcactttgagaaggcccgtgatgtgtacgaggaggccatccttaca
gtggtaacagtcagggatttcacacaagtctttgatagttatgcccagtttgaggagagc
atgatcgcagcaaagatggagaccacagctgagatggggaagaatgaagatgaggacatt
gacatggaacttagactagcccgctttgaggagctgatagcccggcggcccctcctgttg
aacagtgttctactacggcagaaccctcataatgttcatgagtggcacaagcgggtaaaa
ttgtatgatggcaatccacggcagattatcaacacatacactgaggccgtgcagacgata
gatccattgaaggccacggggaagcctcactctctctgggtttccttcgcaaaatactat
gaggaaaatgagcagctggaagatgccaggaccatttttgagaaggctaccaaggtacac
tacaagcaggtggatgaccttgctgcagtgtggtgtgaatatggagagatggagctacgc
catgagaactatgaacaggcactgcgcatactgaggaaagctacagccatcccatccaag
aaggcggagtactttgatgtatcggaggcagtacaaaaccgagtttacaagtcgttgaag
gtctggtccatgctggcggacttggaggagagtctcggcactttccagtctaccaaagcc
gtttatgatcgcatcattgacctccgcatcgccacgcctcagatcatcatcaattatgca
atgttccttgaagagcacaactactttgaggaaagcttcaaagcatatgagcgtggtatt
gctctcttcagatggccaaatgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttatggtggcaagaagctggagagagctagagatttatttgaacaagccctggat
ggctgccctgccaagtttgccaagaccatttacctgttgtatgccaaattggaggaggga
tatggattggcacgacacgccatggccgtctatgaaagagcaacgcaggcagtagatact
ggggagagacatcacatgttcaatatctacatcaagagagcagctgaaatttatggagtc
acgtacaccagagccatttaccagaaagctattgaggtccttcctgatgagcatgcaagg
gacatgtgtcagcgttttgctgacatggagagtaaacttggtgagattgaccgggccaga
gcaatctactcctactgctcgcagatctgcgacccacgggtgaccgctaatttctggcag
gcctggaaagaatttgagatccgccatggcaatgaggacacaattcgagaaatgttgagg
atcaagcgtagtgtccaagccacatacaacacccaggtcaactttatgacctctcagatg
atgaaggcaacaacaagctccacaggcactgtgtcagatctagctccaggccaaatggga
cttgatgacatgaagatgctggagcagaaagcacagctgcttgcagcagaggccgagcag
gacaagcccacgcccaaagagaagattctcttcgtcaggagtgacacctctcgcagcgag
ttggctgagctggctaaacgagccaatcctgatgagattgatattgatgacgaggatgat
gatgaagaaaatccgggaccagaggaggtgcagctggaacagaagagcgtccccactgcc
gtctttggagggcttaaagaggactaa
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