Pseudoliparis swirei (Mariana hadal snailfish): 130188905
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Entry
130188905 CDS
T09868
Name
(RefSeq) protocadherin beta-15-like
KO
K16499
protocadherin delta 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130188905
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Protocadherins
130188905
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
ECSCR
Cadherin_tail
Motif
Other DBs
NCBI-GeneID:
130188905
NCBI-ProteinID:
XP_056263439
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All DBs
Position
3:complement(10497149..10502351)
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AA seq
997 aa
AA seq
DB search
MDRQGSKKRLFGKWHGVCRFALFTCFLDAVRGQIRYSIPEELEHGAFVGNIVEDLGLDLD
KLSARRFRIVSGAKKQYVEVNLENGVLFVNERIDREELCEQSLSCSFHLQVVIESPLELY
RVEMEIMDVNDNSPSFPWTEFNLDISESAAPGSRFPLESAQDLDVGSNSLRTYLLSVNEH
FLLDIQTRSDGSKFAELVLQNSLDREQQSAHQMVLTAVDGGAPERSGTAQIDITVLDAND
NAPVFDQSFYRVRLAENALKGTVVIKLNASDLDEGPNADITYSFSGHAPIKVRQLFSVDS
RTGEIKVKGVIDYEKARMHDIYVQAKDKGPSAVAVHCKVLVNVLDTNDNLPEVILTSVST
PVQEDAPPGTVIAVISVMDKDSGENGNVDCEIPHHVPFQLHSSFKNYYTLVTSDFLDREA
VADYNITLTARDIGSPPLFTRKTILVQVSDVNDNAPRFKQPSYTVYLTENNAPGASICSV
TALDPDYGQNAYLSYSIVDGDIQGLHVSTYVSINSDNGNIYALRSFDHEQLNNFQITVRA
QDAGFPPLTSNVSVNIFILDQNDNAPVIVSPVPQNGSAPSGAVPRSVDAGYLVAKISAVD
ADEGQNSRLFYQLLQATDQSLFSIALYTGEIRTMRQCVERDATRHRLVILVKDNGQPPLS
ATVSIILSVVDSLPDSKPDLGDLSLSPYHSSNFTLYLIVSLGAISFTFLVAIIVMVAVRR
LKGRPSSRESDFPTVSWSCGSCCCCCCSHSETSTTTEVFKKSNLNVRMSAGASGCAEANG
NGAQPQVYCYKMCLTPESSKSDFMFLKPYSPVLSVQQNNAKSTDYLTSGWSALDRNELGN
NRAATPTELKYSNKDWTWTKNQRNSAYKRYSSANMEGTLTRKQKSEAHGFSCSVAPQYWT
WGNHMNDCTISLQEGAVPQYSWTPKYTQPHSEPPDYQHNVYIPGTTSDYSTLKLAPRGEL
DLYNTFSTFGKKKRFISNYEQSFDNDDSLIVSNDIFK
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggacagacaagggtcgaagaaaagactgtttgggaaatggcacggagtttgccgtttt
gcgttgttcacttgttttttggatgcagtccggggacagatacgctactctatcccggag
gaactggagcatggcgcgtttgttggaaacattgtagaggacctgggcttggatttggac
aagctctctgcgcgcagattccggatagtctcgggtgccaagaagcaatatgtggaggta
aatttagaaaatggagttctattcgtcaacgagagaattgatcgtgaggaactatgcgag
cagagtttgtcctgctcttttcacttgcaagtggtcatcgaaagccctctggagctgtac
agggtagagatggaaattatggacgtgaacgataactctcccagtttcccgtggaccgag
ttcaatctggacatatcggagtctgccgcgccagggtcccgcttcccacttgagagcgca
caggatttagacgtcggttccaactcgctgcgcacctacttgctgagtgtgaacgagcac
ttccttttggatatacagacgcgtagtgatggcagtaaatttgcagaactagtcctacag
aactcactggacagagagcagcaaagtgcgcatcaaatggtcctaactgcggtggatgga
ggcgcaccggagagatccggcactgcgcaaatcgatatcactgttttggatgcaaacgac
aacgcgccggtgtttgatcagtcgttttacagagtgaggctggcggaaaacgcactcaaa
ggcacagttgtcataaaactaaatgcgtccgatttagatgagggtcctaatgcagacatc
acctattcattcagcggccacgctcccatcaaagtgcgccagcttttcagcgtggactcg
cgcacgggggaaatcaaagtcaaaggagtgatagattacgaaaaggccaggatgcatgac
atttatgtgcaggcgaaagacaaagggccctccgctgtagcagtccactgcaaagtactg
gtgaatgttttggatacaaatgacaacctcccggaggtgatcctcacgtcggtgtctaca
cctgtgcaggaggacgcgcccccgggcacagtgatagccgtcatcagcgtgatggacaag
gactcgggtgaaaacgggaatgtggactgcgagatcccacaccacgttccattccagctc
cactcatcctttaagaactactatacattagtaacttcagattttctggacagagaggca
gtcgcagactacaacatcaccctcaccgcccgagatataggctccccacctttattcacg
aggaaaaccattttggtccaagtgtctgatgtgaacgataacgcgccccggttcaagcag
ccctcctacactgtgtatttgaccgagaacaacgctccgggggcatctatttgctcggtg
accgcactagacccagattatggtcaaaatgcatacctctcctattctatagtggatggt
gacatacaggggttgcacgtgtccacgtacgtgtccataaactcagacaatgggaacatt
tacgcgctgcgatcctttgaccacgaacaacttaacaacttccagatcactgtccgagct
caagacgccgggttcccgcctctgactagcaacgtctccgtgaacatctttattttggac
caaaacgacaacgcgcccgttattgtgtcccctgttccgcagaacggcagcgcgcccagc
ggagcagtgccccggtccgtggacgccggttatctcgtcgccaagatcagcgcggtggac
gcggacgagggtcaaaactcgcgtctgttttatcagctgctgcaagcaacggaccagagc
ttgttcagcatcgctctgtacacgggcgaaatcaggacgatgcgccaatgtgtggagaga
gacgccacgaggcacagattggtcattcttgtgaaggacaatggtcagccacccctctcg
gccactgtttccatcattctgtcagtggttgacagcctgccagattcgaagcctgatttg
ggagacctgtcactaagcccatatcacagctccaacttcaccctgtatttaatcgtgtct
ctgggcgccatctccttcacatttctggtggctatcattgtcatggttgcagtgcgcaga
ctgaagggcagaccgtccagccgagagtctgacttccccacggtcagctggagttgcggg
agctgctgctgctgctgctgctctcactcggagacctccaccaccacagaggttttcaaa
aagtccaatttgaatgtccggatgtccgcaggcgcgtccggctgcgcggaggcaaacggc
aacggcgcgcagccgcaggtctattgctacaaaatgtgtctgacaccggaatcgtccaaa
agcgacttcatgtttttgaagccttacagtccggtgctgtcagttcagcagaataacgcc
aagagcacagattatctcacttctggctggagcgcactggaccgcaatgaactgggcaac
aacagagcggcaactccaaccgagcttaagtattcaaacaaggactggacctggaccaag
aaccaacgcaactcagcatacaagaggtacagttcagcaaacatggagggcactctcact
cgcaaacaaaagtctgaggcccatgggttttcctgctctgtggcaccacagtactggact
tgggggaaccacatgaatgactgcacgatatctcttcaagagggagcagtccctcaatac
tcatggacccccaagtacactcagcctcactctgaaccgccagactaccagcacaatgtg
tacatccctggcaccacgtctgactacagcactctgaagctggcccccagaggagaactg
gatttgtacaacacgttctctacttttggaaagaaaaagagattcatctcaaactatgaa
caatcttttgacaacgatgatagtctcattgtcagtaacgacatcttcaaatga
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