Pseudoliparis swirei (Mariana hadal snailfish): 130188990
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Entry
130188990 CDS
T09868
Symbol
smurf1
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04120
Ubiquitin mediated proteolysis
pswi04137
Mitophagy - animal
pswi04144
Endocytosis
pswi04340
Hedgehog signaling pathway
pswi04350
TGF-beta signaling pathway
pswi04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130188990 (smurf1)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
130188990 (smurf1)
04350 TGF-beta signaling pathway
130188990 (smurf1)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
130188990 (smurf1)
04137 Mitophagy - animal
130188990 (smurf1)
09144 Cellular community - eukaryotes
04520 Adherens junction
130188990 (smurf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130188990 (smurf1)
04121 Ubiquitin system [BR:
pswi04121
]
130188990 (smurf1)
03029 Mitochondrial biogenesis [BR:
pswi03029
]
130188990 (smurf1)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
130188990 (smurf1)
Membrane trafficking [BR:
pswi04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
130188990 (smurf1)
Autophagy
Mitophagy
Other mitophagy associated proteins
130188990 (smurf1)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
HECT type E3
130188990 (smurf1)
Mitochondrial biogenesis [BR:
pswi03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
130188990 (smurf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
130188990
NCBI-ProteinID:
XP_056263563
LinkDB
All DBs
Position
23:17483989..17503368
Genome browser
AA seq
724 aa
AA seq
DB search
MSNPGTRRNGSSIKIRMTVLCAKNLAKKDFFRLPDPFTKVVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKTDSITISIWNHKKIHKRQGAGFLGCIRLLSNAISRLKDTGYQRLDLCK
LNSSDSDAVRGQIVVSLQTRDRIGSGGPVVDCRGLLENDGPVFEGCFSEEPLPYSDPTGA
AGGGNCRLDSPSQEGRLQTQRIRGQDSRGHGHTPQNRPHGHQPPDLPEGYEQRTTVQGQV
YFLHTQTGVSTWHDPRIPRDLASVSCEELGPLPVGWEVRSTVSGRIYFVDHNNRTTQFTD
PRLHTIISQQSEAKESSQAPQMDVGGEEGVGGGEGDVAARYERDLVHKLKLLRHELSLQQ
PQAGHCRIEVSRDEIFEESYRQIMKMRPKDLKKRLMVKFRAEEGLDYGGVAREWLYLLCH
EMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRVMGLAVFHGHYINGSFTLP
FYKQLLGKPIQLNDLETTDPELHKSLVWILENDITSVLDHTFCVEHNAFGKFSQHELKPN
GRNIPVNEDNKKEYVKLYVNWRFMRGIEAQFLALQKGFSELIPQHLLKPFDHKELELIIG
GLGKIDLADWKTNTRLKHCTSESNVVRWFWQAVEAFSEERRGRLLQFVTGSTRVPLQGFK
ALQGSTGSAGPRLFTIHLIDANTDNLPKAHTCFNRIDMPPYESYEKLYEKLLTAVEETCG
FAVE
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcctgggactcggaggaacgggtccagcatcaaaatccgaatgacagtatta
tgtgccaagaacctcgcaaagaaagacttctttcgcctgccagatccctttaccaaggtt
gtggtggacggatcgggtcaatgccactcgacagacacagtcaagagcacactggacccc
aaatggaatcagcactacgacctctacattggaaagacggactccatcaccatcagcata
tggaaccacaagaagatccataaacgacaaggagcgggcttcctgggctgcatacgactg
ctctccaacgccatcagcaggctaaaagacacaggataccagcgtctagatctatgtaag
ctgaactcctcggacagcgacgcagtgcgggggcagatcgtagtgagcttacagacgcga
gaccgcatcggcagcggaggccccgtggtggactgtagaggactgttggagaacgacggg
cctgtgtttgagggatgcttcagtgaagagcccctgccctactcggaccccactggtgcg
gcggggggcgggaactgtcgacttgactcacccagtcaggagggccgtcttcagacgcag
cgaatcagagggcaggactcgagaggacacggccacacccctcagaacagacctcatggg
caccaaccgcctgacctgccggagggttacgagcaacggacaacggtgcagggccaggtg
tacttccttcacacgcagacgggcgtcagcacctggcacgaccctcggataccgcgggac
ctggccagcgtgagctgcgaggagctcgggccgctgccggtgggttgggaggtccggagc
acggtgtcgggccggatctactttgtggaccacaacaaccgaaccactcagttcacagac
ccgcgcctacacaccattatcagccaacagtccgaagcgaaggaatcctcacaagcccct
cagatggatgtggggggtgaggaaggagtgggtggaggagagggcgacgtggcggcgcgc
tacgagagagacttggtccacaagttgaaactgctccgccatgagctgtcgttgcagcag
cctcaagccgggcactgtcgcatagaggtgtcccgagacgagatctttgaggagtcatat
cggcaaataatgaagatgaggcccaaagacctaaagaagcgcctgatggtgaagttcagg
gcagaggagggcctggactatgggggggtggccagggagtggctgtacctgctgtgtcat
gaaatgttgaacccctattacggcctgttccagtactccacagacaatatctacacacta
cagatcaaccctgactcttccatcaaccctgaccacctgtcatatttccactttgtgggc
cgtgtgatgggcctggccgtttttcacggtcactacatcaacgggagcttcacgctgccc
ttctacaaacagctgctaggcaaacccatccagctcaacgacctggagaccaccgacccg
gagttgcacaagagcctcgtgtggatattagagaacgacatcacctcagtcctggaccac
acgttctgcgtggagcacaatgcctttgggaagttctcgcaacacgaactcaaacccaac
ggccgcaatatccccgtcaacgaggacaacaaaaaagaatacgtcaagctttatgtgaac
tggaggtttatgcggggaattgaagcccagtttctggctctgcagaagggcttcagtgag
ctcatcccgcagcacctcctcaaacctttcgaccataaagaacttgagttgatcatcggc
ggactggggaagatagatctcgccgactggaagacgaacacgcgcctgaagcactgcaca
agtgaaagcaacgtggtgcggtggttctggcaggcggtggaggccttcagcgaggagagg
agaggacgcctcctgcagttcgtcacgggctccacccgggtccccttacaaggattcaaa
gcgcttcagggttctacaggttctgcaggaccaagactcttcaccatccatttgatagac
gccaacacggacaacctgcccaaggctcacacatgttttaaccgaatagacatgcctccc
tacgagtcttacgagaaactctacgagaaactgctgacggccgtggaggagacctgcggc
ttcgccgtggagtga
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integrated database retrieval system
