Pseudoliparis swirei (Mariana hadal snailfish): 130189121
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Entry
130189121 CDS
T09868
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03440
Homologous recombination
pswi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130189121 (top3a)
03460 Fanconi anemia pathway
130189121 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pswi03032
]
130189121 (top3a)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130189121 (top3a)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
130189121 (top3a)
DNA replication proteins [BR:
pswi03032
]
Eukaryotic type
DNA Topoisomerases
130189121 (top3a)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
130189121 (top3a)
FA (Fanconi anemia) pathway
130189121 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
130189121
NCBI-ProteinID:
XP_056263768
LinkDB
All DBs
Position
23:17751352..17762254
Genome browser
AA seq
1031 aa
AA seq
DB search
MLVYLLGRSLLRSGLQRLGVQSRCFCAAQSDRCPGTPQPADMNRSRAQIKRVLCVAEKND
AAKSIAAIMSNGSSRRREGMSKYNKIYEFEYHLFGQDVTVSMTSVSGHLLGLEFKAQFQK
WHSCNPVLLFDAEVEKYCPDNMNHIKRTLEKETRQCQAMIIWTDCDREGENIGFEIIDVC
KAVKPNLQIFRAKFSEITPNSIQRACETLTEPDANISDAVDVRQELDLRIGASFTRFQTL
RLQKIFPESLANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVLHKVEEDTVEFS
WKRNRLFNHTACLVLYQMCMEDPIATVTAVTSKPKSKWRPLPLDTVEMEKLVSRKLKISA
KETMKIAEKLYTQGYISYPRTETNIFPTNLSLGPLVEQQTQSPVWGAFAQRVMDQPGGPN
PRQGKKSDQAHPPIHPTKHSSTLQGNEGRLYEFIVRHFLACVSQDALGHETVVDINIALE
NFSTSGLMIIAKNYLDVYPYDKWSAKLIPVYEQGSQFQPSAVEMVDGQTSPPQLLTEADL
ISLMEKHGIGTDATHADHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNAMGYDMSKPN
LRAELEADLKLVSEGRKDRRSVLQHHIQKYKTVFIESVRKAKKLDEALSPYLGAAQEIPE
AEWQDMEMPLPVRKCPRCSRDMVLKKKREGNRTYLSCTGYPACKAAVWFPDTVLEVSRDD
SVCPTCRPHPVHMLKLKFQRGSLPPMMPLEFIGCIGGCDEMLREVLDLKYLWAGGGGGGG
GGSGGGGGGGGGGGGGGGGGGDPHPPAPRPPRLPRSNPRPSLPPVPSWPPQPPPPAGGGG
GGGGGVIVCNCGQDGLLLTVRKDGPNQGRQFYKCNGGSCNFFLWADEPSQQGEPRSRGPP
LQAPPRVSVGYPNPPGGGREQRGGAGGQTMCNCNEAAVTRTVQKDGPNKGRTFHTCGKPR
DHQCGFFLWADENEPPPGVYGGGFNNGGDAGKKGRKVTGDPTANKPPAARKPRTCGICHT
PGHTRVTCPQR
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgctcgtttaccttttagggagatctttacttcggtccggattacagcggctcggggtc
cagtcgaggtgtttctgcgcggcgcagagtgaccggtgtccgggcacaccgcagccggca
gacatgaaccggagccgggctcagatcaagcgggtcctctgcgtagcggagaagaacgac
gctgccaaaagcatcgcggcgatcatgtccaacggctcgtccaggaggagagaggggatg
tcaaagtataacaaaatctatgagtttgaatatcatctctttggtcaagatgtgacggta
tcaatgacttcagtgtcgggacatttactgggtctggagtttaaagcacaattccagaaa
tggcacagttgcaatcctgtgctgttgtttgatgctgaggtagagaagtactgtccggat
aatatgaatcacattaagcggacactggagaaggagacgaggcagtgccaggccatgatc
atctggactgattgtgacagagagggagaaaacattggctttgaaatcatagatgtctgt
aaagcagtgaagcccaacttacaaatatttcgggccaagttttctgagatcacccccaac
tccattcagagagcttgtgagaccctcacggagccagacgctaacatcagcgatgctgtc
gatgtccgtcaggaactggacctgcgaataggtgcatccttcactcgattccagactctc
cgcctgcagaagatctttccagagtctctggccaatcagctgatctcatacggcagctgt
cagtttcccactctgggatttgtggtggagcgttttaaagccatccaggctttcatacct
gagactttctacaagattaaagtgctgcacaaggtggaagaggacactgtcgagttcagt
tggaaaagaaaccgtctcttcaaccacacagcttgcctggtgctctaccagatgtgcatg
gaggatcccatagcaaccgtcaccgcagtaaccagcaaacccaagagcaagtggagaccg
ctgcctttggacacggtggaaatggagaaacttgtatctcggaaactaaaaataagcgcc
aaagagaccatgaaaatagcagagaagctgtacacccaagggtatatcagctacccccgt
acagagacaaacatcttccccaccaacttgagtctcggccccctggtggagcagcagact
caaagcccggtatggggagcgttcgcccagcgcgtgatggaccagcctgggggtcccaac
ccacgacagggcaagaaatctgaccaagcccacccccccatacaccccaccaagcactcc
agcacactgcagggcaatgagggccgtttgtatgagttcattgtccggcacttcctggcc
tgtgtatcccaggatgctttggggcacgagacggtggttgacatcaacatcgccctggag
aacttctccacctcgggactcatgatcattgcaaagaactacttggacgtttacccgtat
gacaagtggagcgctaagctgatccccgtgtatgagcagggctctcagttccagccctcc
gccgtggagatggtggacggacagacgagtcctccgcagctgctcactgaagccgacctc
atatccctgatggagaagcacggcatcggcaccgatgcaactcatgcagatcacatcgag
accatcaagagtcgcatgtatgtgggcttaacagctgatcagaggttcttgcccggagag
ctcggcatgggactggtggaggggtacaacgccatgggatatgacatgtccaaaccaaac
ctacgcgccgaattggaggctgacctcaagctggtgtccgagggcaggaaggaccgacgc
agcgtgctgcagcaccacatccagaaatacaagaccgtcttcatcgagtccgtcaggaag
gcgaaaaagttagacgaagccctgtcgccatatctgggggcagctcaggagatccctgaa
gcagagtggcaggacatggagatgccgctgccggtaaggaagtgccctcgctgctcgcgg
gacatggtgctgaagaagaagagggagggaaaccgtacgtacctgtcctgtacgggatac
ccggcctgcaaggcggcggtgtggttccccgacacggtgctggaggtgagccgagacgac
agcgtgtgtcccacctgtcggccgcacccggtgcacatgttgaagttaaagttccagagg
ggcagcctccctcccatgatgcctctagaattcatcggctgcatcggcggatgtgacgag
atgctcagggaggtgctggacctgaaatacctttgggcaggggggggaggaggtggaggc
ggtggaagtggcggaggaggtggcggtggaggaggtggaggaggaggaggaggaggaggc
ggcgatcctcatccaccggctccaaggcccccccgcctcccgagatcaaatcctcgccct
tcccttcccccggtcccctcctggcccccgcagccgccccctccagcagggggcggtggt
ggcggcggcggcggcgtcatcgtgtgtaactgcggtcaggacggcctcctcctcaccgtg
cgcaaagacggtcccaaccaaggccggcagttctacaagtgcaacggcggcagctgcaac
ttctttctgtgggccgatgagccgagtcagcagggggagccgcggagccgaggccccccg
ctgcaagccccaccgagggtctccgtggggtacccaaacccccccgggggaggccgagag
cagcgagggggtgcgggggggcagacgatgtgtaactgcaacgaggccgcggtgacgcgc
acggtgcagaaggacggccccaacaagggccgcacgttccacacatgcgggaaaccaaga
gaccatcagtgtggcttcttcctgtgggccgatgagaacgaacctccaccaggtgtgtat
ggcggtggctttaataacggtggagacgcagggaagaagggaaggaaggtcacgggcgat
cccaccgccaacaaacctccggctgcgaggaaaccgcggacctgcggcatctgccacacg
ccgggacacacccgggtcacctgcccccagcggtga
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integrated database retrieval system
