Pseudoliparis swirei (Mariana hadal snailfish): 130189131
Help
Entry
130189131 CDS
T09868
Symbol
mgrn1b
Name
(RefSeq) E3 ubiquitin-protein ligase MGRN1b isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04120
Ubiquitin mediated proteolysis
pswi04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130189131 (mgrn1b)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
130189131 (mgrn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130189131 (mgrn1b)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130189131 (mgrn1b)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130189131 (mgrn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
130189131
NCBI-ProteinID:
XP_056263783
LinkDB
All DBs
Position
23:6465075..6475028
Genome browser
AA seq
549 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRFPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENTDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLIRYKDDSDTSGEEGDKPKVKYGV
EFTFDADARVAVTLYCQAFEEFSNGMAVYSPKNPSLVSETVHYKRGVNQQFSMPSFKIDF
TEWKEEDLNFDLDRGVFPIVIQAVVDEGDDCLGHAHVLLAAFERHVDGSFSIKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKTSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQTMDHDEHSSTDSVPP
GFEPISLLEALNGLQSVSPATPAAPLYDDINFSGGPGGDGRHLSSPEHLSDGSLQKGKVS
KSPDSTLRSPSSPIQEEDEEKMSEVSDAQPHALLSGSPAPTDATAAEDVAESPSLDDEDG
MHSGGDVLQDCSSEHSSLTKTESDPPGDLSLPGSSESTESLKSQSTNCSSQPLLCPTSSL
HMEDEHLNP
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgggctccatcctgagtcggagaatcgcgggtgttgaggatatcgatatccaggccaac
tcggcctatcgatttcctccgaaatcggggaattattttgcgagccacttctttatggga
ggagagaaatttgacacgccacatccagagggatacctttttggagaaaacacagacctg
aactttcttgggaacaggccagtgcagtttccatatgtgacgcctgctccccacgagcct
gtgaaaaccctgaggagtctggtcaacatcagaaaggactctctgcgtttgatcaggtat
aaagatgactctgacacctcgggggaggagggcgacaaaccaaaggtgaagtatggcgtg
gagttcacctttgacgctgacgctcgggtggccgtcaccctctactgccaagcgttcgag
gagttctccaatgggatggcagtatacagcccaaagaacccatccctggtctctgaaact
gtgcattacaagcgaggggtgaaccaacagttctccatgccgtctttcaaaatagatttc
accgagtggaaggaggaagacctgaactttgacctcgaccggggggtgttccccattgtg
atccaggctgtggttgatgaaggggacgattgcctcggacatgctcacgtacttctggca
gcctttgaaagacacgtcgatggcagtttctccatcaagcctctcaagcagaagcaaatt
gtggaccgcgtgagctacctcttacaggagatctacgggattgagaacaaaaacaaccaa
gaaaccaagacgtcggatgatgaaaacagtgacaacagcaacgagtgtgtggtctgtctg
tctgacctgcgagacacactcatcctgccctgcagacatctgtgcctctgcaactcctgc
gcagacaccctgcgttaccaggccaacaactgtcccatctgcaggctgcccttcagagcc
ttgctgcagatcagagctgtgaggaaaaagcccggtgctctgtccccggtgtccttcagc
cccgtcctggctcagacgatggaccatgacgagcactcgagcacggactcggttcctccg
ggcttcgaacccatctccctgctggaggctctgaacggtctgcagtcggtgtctcctgcc
accccagctgcccccctctatgatgacatcaacttctcagggggtccgggcggcgacggc
aggcacctgagctccccggagcatttaagtgatgggagtttgcagaaaggcaaagtcagc
aaatcacctgacagcaccctgagatctccatcctctcccatccaggaggaagacgaagag
aagatgtcggaggtgtccgacgctcagccgcacgcgctgctgtccggcagccccgccccc
accgacgccacggccgccgaggatgtggccgaatctccgtctctcgatgacgaggacggg
atgcattccggaggggacgtcctacaggactgcagcagcgagcacagcagcttgaccaaa
acggagagcgacccgccgggcgacttatcgctgccggggtcatccgagtcaacggaaagc
ctgaagagtcagagcaccaactgctccagccagcctctcctgtgtcccacgagcagcctt
catatggaagacgagcacctcaacccctga
DBGET
integrated database retrieval system
