Pseudoliparis swirei (Mariana hadal snailfish): 130189455
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Entry
130189455 CDS
T09868
Symbol
herc3
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC3 isoform X1
KO
K10614
E3 ubiquitin-protein ligase HERC3 [EC:
2.3.2.26
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130189455 (herc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130189455 (herc3)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
130189455 (herc3)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
HECT type E3
130189455 (herc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
130189455
NCBI-ProteinID:
XP_056264200
LinkDB
All DBs
Position
24:complement(8324915..8349755)
Genome browser
AA seq
1042 aa
AA seq
DB search
MLCWGNAKDGQLGIGIERNLMFEPSNCHVFSGRGLKEAACGGQHSMFLLHDGSVYTCGSN
SCGQLGHSKPGTFPELVGALDTQTITMVSSGRSHSMAVNEQGQVFAWGSGEGGQLGLGTA
EAAVRIPRLVKRLCEQRISQVMCGNQHCIALSRDGQLFTWGQNTSGQLGLGKGEPSMLFP
HPLKSLLGIPLAQITAGGDHSFALSLSGAVFGWGKNRAGQLGLNDEQDRAVPCHIKFLRS
QKVCYISCGNEHTAALTKDGGLFTFGEGSWGQLGHGSTNNELLPRRVLELMGTEVSQITC
GRHHTLAFVPSSDVVYAFGCNSHGQLGTGLLGDARSLLPVKASFLTGSPHRTVTKIICGG
DHSFLLYSNDQSAVISEDFRVINVSKAIAPINYEQLNSWRLKLMYSTDSSVTNDIIIQLS
STACWNGSFLDQSDDTHFKTNPKIPGIDLNSVRKLFEMLGKPSFSGLLEQASKSFESLLI
PQLQRSPPDVEAMRIYLILSEYPALFDSKNYIRLTIPLAMAILRLDANPSKVLDNWWCFV
DGGGFTRMVDMYKSIVVFLLTGGKTLLVPVFYENYFVAILRLLEKLHKVNLKAHHVEYNR
FYIPDITSLVDIQEDYLKWFLSKADIKQSSSPSQGDFPSVNLCAYPFILNAQAKTTMLQT
DAELQMQMAVSGANLHNVFMLLTLEPHLARNPYLVLHVRRDHLVSDTLRELTMYSDVDLK
KPLKVIFDGEEAVDAGGVTKEFFLLLLKELMDPVYGMFTHYKESNLLWFSDKCFVEQNWF
HLIGIICGLAIYNSTVVDLHFPLVLYKKLLNVSPTLEDFKELSPTEARSLQQLLDYDGGD
VEETFLLNFAITRENYGMTEVMELVPGGESISVDKNNRKEFVEAYLRYVFSDSVSEQYSA
FSSGFLKVCGGEILPLFQPSELMAMVVGNNNYNWEEMEKNAVYKGEYTATHPTVRLFWEV
FHEFPLETKKQFLLFLTGSDRIPIHGMESMRIVIQSTTAEEHYLPVAHTCYNLLDMPRYQ
TKEILHRRLTRAVEQYEGFSLV
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgctttgttgggggaacgcaaaagacggacagctgggtatcggtatagagaggaacctt
atgtttgagccgagcaactgtcatgtgttcagtggcaggggactgaaagaagcagcttgt
ggagggcaacactcaatgtttctgctgcatgatggcagcgtgtacacatgtggttctaac
agctgtggacagctgggccacagcaaaccagggactttcccagaactcgtaggagctctg
gacactcagacgataacaatggtgtcgagtggtcggtcccattcaatggcggtgaatgag
cagggtcaagtgtttgcgtgggggtccggtgaagggggccagctcggcctggggactgcg
gaggcggctgttcgaatcccgaggttggtcaaaagactgtgtgagcagcggatctctcaa
gtaatgtgtgggaatcagcactgcattgcactttctcgagatggccagctgttcacgtgg
ggccagaacaccagcggccagctcggcctcgggaaaggagagcccagcatgctgttccct
catcccctgaagtctctgttgggtattcccctggcacagatcaccgccgggggagaccac
agctttgccctctccttgtccggagccgtctttggttggggcaagaacagagctggacaa
cttggtctcaatgatgaacaagatcgagctgtcccgtgccacatcaaattcttgagatct
caaaaagtttgttatatcagctgtggaaacgaacatacagcagccctcacaaaggatggc
ggcttgttcacgtttggtgaaggctcgtggggtcagctgggtcatggctccaccaataat
gaactgttacccaggcgagtgctggagctcatgggcactgaagtgtcccagatcacctgt
ggcaggcaccacacgttggcgtttgttccctcctccgatgtggtgtatgcatttggttgc
aacagccacggccagctgggcacgggactactgggggacgccaggagcctgcttcctgtg
aaggccagcttcctgactggaagtccacacagaaccgtgactaaaatcatctgtggagga
gaccatagcttcttattgtactccaatgaccagagtgctgtcatctccgaggacttcaga
gtgattaatgtcagcaaagcaatcgccccgatcaattatgaacagttaaactcttggagg
ttaaagctgatgtacagcacagattccagtgtcacaaatgacattataatccaactctcc
tctacggcttgttggaacggcagctttttggaccaaagtgatgatacccacttcaaaacc
aacccaaagatcccaggcatcgatctcaactctgtcaggaagttatttgagatgctcggc
aaaccgtctttctctggacttctggaacaggccagcaagagttttgagagtctgttgatc
cctcagctgcagcgctcccctcccgacgtcgaggccatgaggatctacctcatcttgtct
gagtacccggccctgtttgactccaagaactacatccgcctcacgatccccctcgcaatg
gccatcctccggcttgacgccaaccccagcaaagtattggacaactggtggtgttttgtg
gacggcggcgggttcaccagaatggtcgacatgtacaaaagcatcgtcgtgttcctgctg
acgggaggcaagacgctgctcgtaccggttttctacgagaactactttgtggccattctg
aggctgctggagaaactccacaaggtaaacttaaaggcccaccatgtggagtacaaccgc
ttttatatccctgacatcaccagcctggtggacatccaggaagactacctcaaatggttt
ctgagtaaagctgacattaaacaatcatcctccccttcacagggtgactttccctcagtg
aacctatgtgcctacccgttcatactgaacgctcaagccaagacaaccatgttgcaaaca
gacgctgaactgcaaatgcaaatggcggtgagcggtgcaaacctacacaacgtcttcatg
ctgctcacgctggagccccatctggcgaggaacccttacttggtgctgcatgtgcgcagg
gaccatttagtaagcgacacactacgagagctcaccatgtactctgatgtggacctcaag
aaaccgctcaaggtgatctttgacggagaggaggccgtggatgcaggtggagtaactaaa
gagttcttcctgctactgttgaaggagctgatggatcctgtgtatgggatgttcactcat
tacaaagagtccaaccttctgtggttctcagacaagtgttttgttgagcagaactggttc
cacctgatcgggatcatctgcggtctggccatctacaactccacagtggtggacctccac
ttccccctggttctctacaagaagctgctcaatgtgtcgccgaccctggaggacttcaag
gagctgtcgcccaccgaggctcggagtctacaacaacttctagactacgacgggggtgat
gtggaggagacgtttcttctcaactttgctatcaccagggagaactacgggatgacagaa
gtcatggagctcgttcctggaggagaaagcatcagcgtggataaaaataacaggaaggag
tttgtggaggcctacctgcgctacgtgttctctgattctgtgagcgagcagtactcggcc
ttctcctctggcttcctgaaagtgtgcggtggggagatcctgccgctgttccagccgtct
gagctgatggccatggtggtcggcaacaacaactacaactgggaggagatggagaagaat
gccgtgtacaaaggggaatacacagccactcatccaacggtccgattgttctgggaggtt
ttccacgagttccctctggaaacgaagaagcagttcttattgttcctgaccggcagtgac
cggatccccatccacggcatggagagcatgcgtatcgtcatccagtccacgacggcggag
gagcactacctaccggtggcccacacctgctacaacctgctggacatgccccgctaccag
accaaagagatcctgcaccgccgtctcactcgggctgtggagcagtacgagggcttcagt
ctggtctga
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