KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130189523
Entry
130189523         CDS       T09868                                 
Symbol
lsm6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018  RNA degradation
pswi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130189523 (lsm6)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130189523 (lsm6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pswi03019]
    130189523 (lsm6)
   03041 Spliceosome [BR:pswi03041]
    130189523 (lsm6)
Messenger RNA biogenesis [BR:pswi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     130189523 (lsm6)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     130189523 (lsm6)
Spliceosome [BR:pswi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    130189523 (lsm6)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 130189523
NCBI-ProteinID: XP_056264341
LinkDB
Position
24:complement(7565169..7567533)
AA seq 80 aa
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKY
GDAFLRGNNVLYISTQKRKS
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagtctgagaaagcaaaccccgagcgacttcctgaagcagataatcgggagaccagtg
gtggtcaaactgaactctggcgtcgattacagaggtgtcctggcctgcctcgatggttac
atgaacattgccatcgagcagaccgaggagtatgtgaatgggcagctcaagaataagtat
ggagatgcgtttctcagaggaaacaatgtcctttacatcagcacccagaagaggaagtcg
tag

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