Pseudoliparis swirei (Mariana hadal snailfish): 130189536
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Entry
130189536 CDS
T09868
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130189536 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130189536 (taf5l)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130189536 (taf5l)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130189536 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
130189536 (taf5l)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130189536 (taf5l)
STAGA complex
130189536 (taf5l)
TFTC complex
130189536 (taf5l)
SAGA complex
130189536 (taf5l)
SLIK complex
130189536 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
RMC1_N
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_WDR19_1st
PEP5_VPS11_N
Nbas_N
WD_LRWD1
Beta-prop_IP5PC_F
Mala_s_1-like
Motif
Other DBs
NCBI-GeneID:
130189536
NCBI-ProteinID:
XP_056264371
LinkDB
All DBs
Position
24:2107693..2112792
Genome browser
AA seq
609 aa
AA seq
DB search
MKRVRTEQIQYAVAQYLKRRQYVDTDGSLKGAKLFQSAEEMAASLTVQTESGSTNVVSAA
PCQSDPQQYETQFSRLRSFLSETDISWAKEVSGVLYPLFVYLHLDLVHCGLKGAVDGFYG
RFHGAFLQDGEQRATIEQLRHVLTAQDVAANPKLSAFLEHKYVVHLAEPAYVYLLRYLQS
EDNSALCRALSTHLQVEVTASRRTDYQLYEAAGGATAANAAAAPNSASSWAGADGVAEGG
ATAGVEVPAGVPQSEAALETLQDCIKKVREGPPTLTTVCFYAFHHTEQTLNTAEVSADSR
LLAAGFDSSAVKLWSLRARKLKAAPRQADVSLIHLACDVLEEEVEEADGSGSELKTLRGH
SGPVFRTAFLTDGSGLLSCSEDTTIRYWDLGRFTNTALYRGHAYPVWDVDVSPCSLYFAS
GSHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSADKTVRLWSTQQGASV
RLFTGHRGPVLSLAFSPNGKYLASAGEDQRVKLWDLATGTPFKDLHGHTDGVTSLSFSPD
SSLVASASADNSVRVWDIRNSHGGTPAADGSSGELVGLYTGNTSSVLNVQFMACNLLLVT
GTAQEKAEQ
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggttcgcactgagcagatccagtacgcggtggctcagtacctgaagcggagg
cagtatgtggacacggacggctctctgaagggggccaagctcttccagtctgcggaggag
atggctgccagtctcacagtgcagacggagtcgggcagcaccaacgtcgtctctgctgct
ccctgccagtccgacccgcagcaatacgagacccagttctcccggctgcgctcctttctg
tcagaaacggacatatcctgggcgaaggaagtgagcggcgtcctctacccgctcttcgtc
tacctccacctggacctggtccactgcggcctgaagggggcggtggacggcttctacggc
cgcttccacggcgccttcctccaggacggcgagcagcgcgccaccatcgagcagctgcgc
cacgtcctcacggcgcaggacgtcgccgccaaccccaagctgagcgccttcctggagcac
aagtacgtggtgcacctggcggagccggcctacgtctacctgctgcgctacctgcagagc
gaggacaacagcgccctctgcagggccctgagcacacacctgcaggtggaggtcacggcc
tccaggcgcacggactaccagctgtacgaagccgcgggcggggcgacggccgccaacgcc
gccgccgctccgaactccgcctcctcctgggcgggggcggacggcgtggcggagggcggc
gcgacggcgggggtggaggtccccgccggggtccctcagagcgaggcggccctggagacc
ctccaggactgcatcaagaaggtccgcgaggggccgcccacgctcaccaccgtgtgcttc
tacgccttccaccacacggagcagacgctgaacacggcggaggtgtcggccgacagccgg
ctgctggccgccggcttcgacagctccgccgtgaagctgtggagcctccgcgcccggaag
ctgaaggccgcgccgcgccaggccgacgtgtcgctcatccacctggcctgcgacgtgctg
gaggaggaggtggaggaagccgacggctccggcagcgagctcaagacgctgcgcggccac
agcggcccggtgttccgcaccgccttcctgacggacggctccggcctgctctcctgctcc
gaggacaccaccatccgctactgggacctgggccgcttcaccaacacggcgctgtaccgc
ggccacgcctacccggtgtgggacgtggacgtgagcccctgcagcctctacttcgccagc
ggctcgcacgaccgcacggcgcgcctctggacgttctcgcgcacgtacccgctgcgcctc
tacgccggccacctcgccgacgtcgactgcgtcaagttccacccgaactccaactacctg
gccacgggctccgcggataaaaccgtccgcctgtggagcacccagcagggggcgtcggtc
cgcctcttcacgggccaccggggccccgtgctgtcgctcgccttctcgcccaacgggaag
tacttggcgtccgccggcgaggaccagcgggtgaagctgtgggacttggcgacggggacg
ccgttcaaagacctgcacggccacacggacggcgtcaccagcctgtccttcagccccgac
agcagcctggtggcgtcggcgtccgcggacaactcggtgcgcgtgtgggacatccggaac
tcgcacggcgggacgccggcggccgacggctcgtccggcgagctggtgggactgtacacg
gggaacaccagcagcgtgctgaacgtccagttcatggcgtgcaacctgctgctggtgacg
gggaccgcgcaagagaaagcggaacagtag
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