Pseudoliparis swirei (Mariana hadal snailfish): 130189587
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Entry
130189587 CDS
T09868
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi02010
ABC transporters
pswi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
130189587
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130189587
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pswi02000
]
130189587
Transporters [BR:
pswi02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
130189587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
DUF7447
Motif
Other DBs
NCBI-GeneID:
130189587
NCBI-ProteinID:
XP_056264427
LinkDB
All DBs
Position
24:complement(24126419..24168090)
Genome browser
AA seq
2277 aa
AA seq
DB search
MSVSTQLGLLLWKNFTYRRRQTIQLLIEIVWPLFIFFILISVRMHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRNPTPGESPGVVGNFNDSIISRLFNDAKKILLYTQNDK
SYEGYKGLLRALRKLQKNTASFKLKDFLQDDETLSHFLHHNASLPRHALKQIVEADVNLE
KVLTKGFGFHLRDLCNGTPLEEFVHIADRNVSRLTQEIICNSSRDWLDKAQSHFLSNLDF
FKPIRKDVKSDPKVVQEVSAATDNLLESLGALAVELNSMNSWKDMRKEILYLTVNATGSP
NQMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGNSSDADLLSAYDNSSTPYC
NKMMRNLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIHEVNKTFQEFGVLRDLGGM
WEEMRPKFWNFMETGEEMDMVRTLLQNNGSAAFFNAQLSGTEWRVSDVSAFLMKVSEDQR
PAGSAYTWRDVFNEADHSIQTISRFMECVNLDKLEPVANEERLVNKSMGLLNNQKFWAGI
VFPDISHSDSADLPPNVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYVWGGFSY
LQDVIEHGIIRAITGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAII
IKGVVYEKEARLKETMRIMGLNNGILWLSWFISSLIPLLISASLLALLLKMGNLLPYSHP
GVVFLFLGSFGVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYIGFGA
KVIVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEGDNYNLTTSISLMLFDAVLY
GIMTWYIESVFPGQYGIPRPWYFPFTKTYWCGEEENTSMSTPLSKKGNAEAVCIEEEPSD
IEPGVYIENLVKVYSHGKKLAVDGLSLKFYKGQITSFLGHNGAGKTTTMSILTGLFPPTS
GTAYIHGKDIRSELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLPYEKVKAEMEQ
IVNDVGLSDKRHSRTNTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL
LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDY
DLTLQSCRNSASTVSYSKKPEKVRKLLRTTQEDAVSESSSDAGLGSEPESETTTIDVSLI
SNLIFKHVHEARLVEDLGHEITYVLPYQSAKDGAFVELFHELDDRLTDLGISSYGISDTT
LEEIFLKVAEDSGVDAVELSDGVVPTRTRRHHAFGDHQSCLKPFTEDDFEFNESEESRET
DLLSGTDGKGSFKVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFS
LIVPPFGKYPSLTLDHSMYGEQFTFISNDLPEDPHINKLLEALTEKAGFGTRCMEGQPIP
ETSCAAVEDEWSLPEVSQSVRDVFDKGNWSMEDPSPMCECSCGGRKRMLPECPASAGGLP
PPQIKISEKDTLQNLTGRNVSDYLVKTYAQIIGKSLKNKILVNEFRYGGFSLGARRSPLM
AHTEDIDEAIAQLTKRFHLERGTAADRFFNSLSSFIQGLDTKNNVKIWFNNKGWHSIGSF
LNVMNNGILRASLKADQDPTKFGITAANHPLNLTKEQLSQVALMTTSVDVLVSICVIFAM
SFVPASFVVFLIQERVNKAKHLQFISGVQPLLYWLANFVWDMCNYIVPATLVIIIFMCFQ
QDAYVSSTNLPVLALLLLFYGWSITPLMYPASFCFKIPSTAYVVLTSVNILIGINGSVAT
FVLELFGGNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLA
WDMVGKNLFAMAIEGVIFFTITILIQYHFFFKARSSTSHLKPIGEEDEDVARERQRILSG
GGHSDILELKQLTKIYKRKQKPAVDRLCVGIPRGECFGLLGVNGAGKTSTFKMLTGDSMV
TGGEAYLAGKSVKTEIHEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVA
EWGIRKMGLLKYVDKSAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALWN
AILSIIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRV
TGPDPDLRPVREFIERELPGSTLKEKHRNMLQYQLPTSLTSLARIFSLLSENKEALSIED
YSVSQTTLDQVFVNFAKDQSDEDHLKEAHLNKRDAVVVDIPKRNTFITDNKTKESCV
NT seq
6834 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtctccactcaactgggtttactgctttggaagaacttcacttatcgacggaga
cagaccattcaactgctgattgagatcgtctggcctctgttcatcttcttcatcctgatt
tcagtccggatgcattatcccccctacgagcaacatgaatgccatttcccgaacaaggcc
atgccctcggctggtaccctgccctgggtgcaaggcatcatctgcaacgccaacaacccc
tgcttccgcaatcccacacctggcgagagtcccggggtggtggggaatttcaatgattct
ataatctcccgtctgttcaacgatgccaagaagatcctgctgtacactcagaatgataag
agctacgagggctacaaggggctgctgagggccctcaggaagctgcagaagaacactgct
agtttcaagctgaaggactttttgcaagacgatgagactctttcccacttcctgcaccac
aacgcctctctcccccgtcacgcgctgaaacagatcgtggaggctgatgtcaatctggag
aaggtgctgactaaaggtttcggcttccatctccgggacctctgtaacggcacgcccctc
gaggagttcgtccacatcgccgaccgcaacgtgtcccgcctgactcaagaaatcatttgc
aattcctccagggattggctagacaaggcccagagccacttcctctccaacttggacttt
ttcaaacccattcggaaggatgtcaagtcggaccccaaagttgttcaggaagtctcagct
gcaaccgacaatcttctggagagcctgggagcattggccgtggagcttaacagtatgaac
agttggaaggacatgcgtaaggagatcctgtatctcactgtaaatgccacaggctctccg
aaccagatgtaccaggctgtgtcgcgcatcgtctgcggacaccccgagggagggggcctc
aaaatcaagtctctcaactggtatgaggacaacaactacaaggccctgtttggaaaccat
ggcaacagcagcgacgctgatctcctctcggcttacgacaactcttccactccctattgt
aacaaaatgatgcggaacctggagtccagccccatctccaggatgatctggagagctctg
aagcctctgctcatggggaagatcctgtacacgccagatacccccgccacacagagaatc
atccatgaggtgaataagaccttccaggagttcggcgtgctgagggaccttggagggatg
tgggaggagatgaggcccaaattctggaacttcatggaaacgggcgaggaaatggacatg
gttaggacgctgctccagaataacggcagtgccgcgttctttaacgctcagctcagtggg
acggagtggcgtgtgtcggacgtgtcggccttcctgatgaaggtctcggaggaccagaga
cctgcaggatccgcttatacctggagagacgtcttcaatgaagccgaccactccatccag
accatctcgcgcttcatggagtgtgtcaacctagacaagctggagcctgtcgccaatgag
gagagactggtcaacaagtccatgggtcttctgaacaaccagaagttctgggctggaatc
gtgtttcctgacatctcccatagcgacagcgccgacttgcctcctaacgtcaaatacaag
atccgcatggacattgataacgtggagaggacaaacaagattaaagacggctattgggac
cccggtcccagggcagaccccttcgaggaccttcgatatgtctggggtggattttcttac
ctgcaggacgtgatcgagcatggaatcatcagagccatcactggcaccaaggagaagacg
ggcgtctacattcagcagatgccctacccctgctacgttgatgacattttcctgcgggtg
atgagtcggtccatgcctctcttcatgaccctggcgtggatgtactcggtagccatcatc
atcaagggcgtggtgtacgagaaggaggcccggctcaaagagaccatgaggatcatgggg
ctgaacaacggcatcctgtggctcagctggttcatcagcagcttgatcccgctgctgatc
agcgccagcttgctggcgctgttattgaagatgggaaacctgctgccttacagtcaccca
ggcgttgtgttcctattcctgggatccttcggcgttgtaaccatcatgcagtgcttcctc
atcagcactctgttctctcgtgccaacctggcagctgcctgcgggggcatcatatacttc
acgctctacctgccctacgtgctgtgtgtcgcctggcaagactacattggcttcggagcc
aaagtcatagtgagtctgctgtctcctgtggcgtttggttttggctgtgagtactttgcc
ctgttcgaggagcaaggggtgggcatccagtggtccaacctgctggccagccccctggag
ggggacaactacaacctgaccacctccatctccctcatgctgtttgacgcggtgctctac
ggaataatgacctggtacatcgaatctgtgttccctggtcagtatgggatccccaggcct
tggtacttccctttcacgaagacgtactggtgtggagaggaagagaacaccagcatgtcc
acccctctgtcgaagaagggcaacgctgaagctgtgtgtatcgaggaggagccgagtgac
atcgagccaggtgtttacatcgagaatctggtgaaggtctacagccatggaaaaaagctg
gcggtggacggactgtccctgaagttctataaaggacagataacctccttcctcggccac
aatggagctggcaagaccaccaccatgtcaatcctgacgggcttgttcccacccacatct
ggcacagcctatatccacggcaaggacatccgcagtgaactcagcaccatccggcagaat
ctgggcgtctgcccccaacacaacgtactgttcagcatgctgacggtggaggaacacatc
tggttctacgcccgtctgaaggggctgccgtacgagaaagtgaaggccgagatggaacaa
attgtgaacgacgtcggactgtctgacaaacggcattcccgcaccaacacgctctccgga
gggatgcagaggaaactgtcagtggctctggcgtttgtcgggggctcaaaagttgtgatc
ctggatgaacctacggccggagtcgatccctacgcacgcaggggcatctgggacctgctg
cttaaatacagacaaggccgcaccatcatcctgtccactcaccacatggacgaggccgac
atcctgggcgaccgcatcgccatcatctcccacggcaagctgtgctgcgtgggctcctcg
ctgttcctaaagacccaactgggcacgggctactacctgaccctagtcaagagagactac
gacttaacacttcaatcctgcaggaattccgccagcaccgtgtcctacagcaagaagccc
gagaaggtacgaaagctgttgaggacaacgcaggaggacgctgtatcagagagcagctca
gatgcaggtctgggcagcgaaccagagagtgaaaccaccactattgatgtgtcccttatc
tccaacctgatattcaagcatgtccacgaggctcgcctggtggaggaccttggccatgag
atcacttatgtcttgccctatcagtcagctaaagacggagcctttgtcgagctcttccac
gagctggatgacagactcaccgacctgggaatatccagctatggaatatctgataccacc
ctggaggagattttcctgaaagtggctgaggacagcggagtggacgctgttgagctctca
gatggagtcgtgccgaccaggacccgtcgccatcatgcatttggagaccaccagagctgc
ctgaagcccttcaccgaggacgactttgaattcaacgagtcagaagaatcccgagagacc
gacctgctcagtggaaccgatggcaaaggctcgttcaaggtcaaaggctggagtctgaag
aggcagcagtttgttgcactactctggaaaagattcctctacgcccggcgctccaggaaa
ggcttctttgctcagattgttctcccggcggtgtttgtgtgtattgccctggtgttcagc
ctgattgtccctccgtttggaaagtacccaagtctgactctggatcacagcatgtacggg
gagcagttcaccttcatcagtaatgacttacccgaggaccctcacatcaacaaactactg
gaagctctcacagaaaaagcaggatttggaacgcgctgcatggaaggacaacccataccg
gagacttcctgtgcagcagtagaggatgagtggtcgctcccggaagtctctcagagtgtg
agggacgtgttcgacaaaggcaactggtccatggaggatccctctcccatgtgtgagtgc
agctgtggaggacgcaagaggatgcttcccgagtgtcctgctagcgccgggggactccca
ccacctcagattaaaatcagcgaaaaagacacacttcagaatttgactggccgaaacgtc
tccgactatctggttaaaacctacgctcagatcatcggcaagagcctgaagaacaagatt
ttggtcaacgagttcagatacggtggattctcactgggcgccaggagatctccgttaatg
gcccacacagaggacatcgacgaggccatcgctcaactcacgaagcgtttccacctggag
agaggaacggccgcggatcggttctttaacagtctctccagttttatacaagggttggac
accaagaacaatgtcaagatctggttcaacaacaaaggctggcacagcatcggctcgttc
ctcaacgtgatgaacaacggcatcctgcgggcgagtctgaaggccgaccaagaccccacg
aagttcggcatcactgccgccaatcacccgctcaacctcaccaaggagcagctgtcacag
gtcgcattgatgacgacgtcggtcgatgtgctggtttccatctgcgtgatcttcgccatg
tccttcgtacctgccagttttgtggtcttcctcatccaggagagagtgaacaaagccaaa
cacctgcagttcatcagcggcgtgcagcctttactctattggctggccaactttgtctgg
gacatgtgtaactacatcgtcccggccacactggtcatcatcatcttcatgtgtttccaa
caagatgcctacgtgtcctccaccaatctgcccgtgctggcgctgctgctgctgttctac
ggatggtccatcacccctctgatgtacccagcctcgttctgcttcaagatccccagcacg
gcctacgtggttctcaccagcgttaacatactgatcgggatcaacggcagcgtcgccaca
tttgtactggagctgtttggaggcaatgaaattggtggcatcaacgacatcctgaagaac
gtgttcctcatcttccctcacttctgtctgggcagagggctgattgacatggtgaagaat
caggcaatggcagatgctctggagagatttggtgaaaaccggttccgctcccctctggcc
tgggacatggtgggaaagaacctgtttgctatggccatagagggcgtgatcttcttcacc
atcaccatcctcattcaataccacttcttcttcaaggccaggtcatccactagtcacctg
aagcccattggagaagaagacgaggacgtggccagagagcgacagaggatcctcagtgga
ggaggacactcggacatcctggagctcaaacagctcaccaagatttacaaaaggaaacag
aagccggcagtggaccgactgtgtgtcggcatcccccgtggagagtgcttcggtctgctg
ggggtgaatggggcagggaaaaccagcacctttaaaatgctgacaggagactcgatggtc
accggtggagaggcttacctggctggcaagagtgtcaagacagagatccatgaggtgcat
cagaacatgggctactgtcctcagtttgatgccatcaacgatctgctgaccggcagagag
cacctcgagttctacgccatcctgagaggagtgcctgagaaggaagtctgcgaggtggca
gagtggggcatccggaagatgggtttgctcaagtatgtggacaagtcagccggcagctac
agcggaggaaacatgaggaaactgtccactgccatcgctctcataggaggaccacctgtc
gtgtttctggatgaaccgacgacaggcatggatcctaaagcccgccgtgctctgtggaac
gcaatcctgagcatcatcaaagagggacgatctgtagtcctgacctctcacagcatggag
gagtgtgaggcactttgcaccagaatggccatcatggtcaacggcaggttccgctgtctg
ggcagtgtgcagcatctcaaaaacaggttcggcgacggctacaccatcatcctgcgggtg
accggcccagacccggaccttcggccggtgagggagttcatcgagcgggagctgcctggc
agcacgctgaaggagaagcaccgcaacatgctgcaataccaactgcccacctccctcacc
tccctcgcccgcatcttctccctgctctctgagaacaaggaggccctcagcatagaggac
tactccgtctcgcagactactttagaccaagtgtttgtaaatttcgccaaggaccaaagt
gatgaggaccatttgaaagaggcccatctgaacaaacgggacgctgtggtagtggacatt
cccaagcgaaacactttcatcacggacaacaagaccaaggagagctgcgtctga
DBGET
integrated database retrieval system
