Pseudoliparis swirei (Mariana hadal snailfish): 130189630
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Entry
130189630 CDS
T09868
Symbol
shoc2
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
130189630 (shoc2)
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Motif
Pfam:
LRR_8
LRR_4
LRR_14
LRR_LRWD1
LRR_9
LRR_13
LRR_NLRC4
Motif
Other DBs
NCBI-GeneID:
130189630
NCBI-ProteinID:
XP_056264499
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Position
24:23671142..23693129
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AA seq
582 aa
AA seq
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MSSTLGKEKDSKEKDPKGGPAGKEREKESRALAGLVKDGGKETKTKGKDPKEGKKDTSSS
TPGVAFAVDNTIKRPNPAAGTRKKSSNAEVIKELNKCREENSMRLDLSKRSIHILPTSIK
ELTQLAELYLYSNKLQSLPAEVGCLSGLLTLALSENSLTSLPDSLDSLKKLRMLDLRHNK
LREIPAVVYRLTSLTTLYLRFNRITAVEKDIRNLSKLTMLSIRENKIKQLPAEIGELCNL
ITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPETTGNLASINRLGLRYNRLSAIP
RSLAKCRELEELNLENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSL
NMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPED
ICGLVSLEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLETLPNEIAYLKEIQKLVLTN
NHLTTLPRGIGHLTNLTHLGLGENLLQHLPEEIGTLENLEELYLNDNPNLHSLPFELALC
SKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYRAMV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtactttaggcaaagaaaaagattcgaaagaaaaggaccccaaaggcggtccg
gcggggaaagaaagggaaaaggagtccagggctctagccggcttagtcaaagatgggggc
aaagaaaccaagaccaaagggaaagatcccaaagaaggaaagaaggacaccagcagctcg
acgccgggtgtggctttcgctgtcgacaacacgataaagcggccaaacccggcagcaggt
acgcgtaagaagtccagcaacgccgaggtgatcaaagagctcaacaagtgccgggaggag
aactcgatgagactggatctgtccaagcggtccattcacatcttgcccacctccatcaag
gagttgacgcagctcgctgaactctacttatacagcaacaagctgcagagcctgccagcc
gaggtgggctgcctgtcgggcctgctcactttagccctcagcgagaactccctgaccagt
ttgcccgactccctggactctcttaagaagcttcggatgctcgacctgcggcacaacaag
cttcgggagataccggctgtggtctaccggctgacgtctctcacgacgctgtacctgcgc
ttcaaccgcatcacggcagtggagaaggacatccggaacctctccaagctcacgatgctc
agcatccgggagaacaagatcaagcagctgcctgcggagataggggagctatgcaacctc
ataactctggatgttgcccataaccagttggaacacctaccgaaggaaattggaaattgc
actcaaataaccaacctcgacttgcagcacaatgagctcttggacctccccgagactaca
ggcaacctggcaagcataaatcgcttaggtctgcgatacaatagattgtcagccatcccc
agatcattagccaaatgtcgagaactggaggagctaaaccttgaaaacaacaacatttca
gtgttgccagagggcctactgtcaagtttggtcaacctgacgagtctaacgctggcgagg
aactgcttccagtcgtaccctgtgggcgggccatcccagttctccaccatctattccctc
aacatggagcacaaccgcatcaacaagatcccctttggcatcttttccagggccaaagtg
ttaagcaagcttaacatgaaggacaaccagttaacatctctgccattggactttggcaca
tggactagcatggttgagcttaacctggcaaccaatcagctgacaaagatcccagaggac
atctgtggcttagtttctctggaggtgttaatactgtccaataatctcctcaagaagtta
ccgcatggtattggaaatttgagaaagctacgggagctcgacttggaggaaaacaaattg
gaaactctacctaatgaaattgcttacctgaaagagatacagaaattggtgttgacaaat
aatcatctgaccacgttacccagaggcatcggccacctcaccaacctgactcaccttggt
ttgggggagaacctgctgcaacacctcccagaggagattggtacactggagaacctggag
gagctgtacctcaacgacaatcccaacctgcacagcctcccgttcgagctggccctctgc
agcaagctgtccatcatgagcatcgagaactgtcccctcagccacctgccgccccagatc
gtggcgggaggcccctccttcatcatccagttcctcaagatgcaaggaccgtaccgtgcc
atggtctga
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