Pseudoliparis swirei (Mariana hadal snailfish): 130189637
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Entry
130189637 CDS
T09868
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
130189637 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130189637 (slx4)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130189637 (slx4)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
130189637 (slx4)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
130189637 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BTB
Slx4
zf-C2H2
zf-C2H2_4
zf-met
Motif
Other DBs
NCBI-GeneID:
130189637
NCBI-ProteinID:
XP_056264513
LinkDB
All DBs
Position
24:23098735..23110672
Genome browser
AA seq
1707 aa
AA seq
DB search
MDDSDQDFVDLYSRPLKRVRKKPVESRPPSDGEKRRGDHRRGPHGDSGSRAAADRRVVCG
GGTGHHAGDAESSAVPSAAEPEPEPSCSLARDKVLHRMQQFKRAGPQRMVHKDQGHPDGV
PPPPPPPLTQIHAQCDSCLCVSGPRSSALFRFRSPPGAPGQRRGSGPAAAAAAGQGGGRG
PDGGPGGPRPLLLSDLPTRSVTHDPRGASAASQPVWTFISSKLSAFFFLPMLFSSGVKRT
DALKAIPLCRCLDDSEGNAPAPPPPPPGVPDCPICGQKFKSQKSRSAHLKRCSSDMGVAP
AVLLQALQRQTEEAQSAPRGHALPQAGGTKRKGSSKPGLPVRKRPRKKTAPLDEEAMVAL
ALSSSLLDQEQRAKRSQTNAAASHIAMTTALKGTDTVKRRRKRKKGGAPRPPPLLLVQEA
EAALARLQGRVSALLLRSRAPSPPTPPRRPSRLPGRSAAAVLWQKSTLLGGASVRLSDFY
TPELREFIAPWESAATDAASSSLADGPQPYVQPVSEGTPDPETGASQMSSSPPALSASRA
LLLDLMELAEDGLTLTQCGHPASGPDHDERAGQISNPRLSGFVLEESEEPAELRASGFLP
EPRRGTTARSPERGGHRSVALSRLASDLSSLVNNPQLSDLQLQVDSGEVYSAHSVLLYAR
CPLLAEMVHESGFGVQEEGGPAVQRVLLNDVPGRAVLALLQFLYTARCSVPAALRTHVLE
LASRFDLQELQRLCEHHQRDPETLGGEEDHGNQEENHQEENHQEENQQAFAELLRSMWDG
EDEDEGPGADGGRHEEGESEDHRADDLASRDREIREENVNEEELEEIYEFAATQRKREEE
EDSTEEEEEEEEEKGDEEEDGEKVFTKPAEPQRSPPGLGLDLSYSRLFSDSWGVSAGPSS
SPSSSAPAKTPPPQPSSGPSLLRSSASVVDDLSASSLPVLGRSPGPAGDRGGAGDEGTED
PALKCTGPRGVWVPLDNQDPELIVLSDSSEEVEVFPPRSPSPHPSGAVQKPQSYTQLKPP
PVPEPDEQKNRPRSLERSPDDPSAAPAQIHLDPWSEQDPADCSPELSWLIPSTPVQPGRR
TATGATQTPSSVCRTQLFPKGEASPASPIVTNRVQTSHSPDSAPVCPPGGGAPPLMLDET
RRSSVDLDFCSQSPELSRSPPSKREARLCVRPPPCSSTPLHTELRGGPAPLRGDPEESRT
SPGKDGAPPESPEETELGSFRLSLASDPSHPPSSSSGGGGLRGSRRQSGSSGRSRRSAGS
SGHDDTGSELKGRGLGKDRGEGERGGGEKDTGDEGEQEDAAEGEAGVAQSSFQRRSVDEP
PMAFGDSWGLDAVDLEVTPGCFSLRLEDSGASSQQGQRDAARSSSAAGRRVHLPDGHVTS
SPPPSAHSAQARGGVSFTPSPPDPSSQTTPEVINSLLGSNIWDSWDEEEEKAPPLPQRAN
PLAQLRTPAPSRRNQQRPVVPITPLPPYSDMDTPELKNKLNRFGVRPLPKRQMILKLKEI
HQYTHQLVSSEEEEEEEEEGPSATVPTNRPTAGSHVPGDRAVSCTQRVKFKEPTAPPREE
EEEEEEAGLHSASQGSNSSSTAASEDSESRSNPELCLPSDSDSDGGISASQTASRHQDRL
RAVRSFILADPRLYGQILRYRPLVLSQFQERLKAAGIRLAATKLLDYLDSQCITVTTAKP
GHRRRGQRPKAAGDRGAGRRRPATAPS
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atggatgactcggaccaggactttgtggacctctactcgaggccgttgaaacgagtccgc
aagaaaccggttgagtccagaccgccgagcgacggagagaagaggcggggggaccaccgg
agagggccgcacggggactccgggtctcgtgccgccgcggaccggcgtgtggtctgcgga
ggagggaccggacaccacgcgggagatgccgagtcgtccgctgtgccctcggcagcagaa
ccggaaccagaaccgagctgttcgctggcgagagacaaagtgctccaccggatgcagcag
ttcaagagagccggtccgcagaggatggtgcacaaggaccagggtcatcccgatggcgtc
cctcctcctcctcctcctcctctgacacaaatacatgctcaatgtgactcgtgtctttgt
gtgtcgggacccagatcctccgcactcttccggttcaggtctccgcccggggcccccgga
cagcgacgaggctctggccctgcggctgcagcggcagctggacagggaggcggccgaggc
ccagacggcggacctggaggaccgcggcctcttcttctgtcagatctgccaacgagatct
gtcacgcatgacccccgaggggcgagcgcagcatctcaaccggtttggacttttatttct
tctaaattgtctgcgtttttttttttaccgatgcttttttcatccggagtgaagcggact
gacgctctgaaggcgatccctctctgcaggtgtttggatgacagcgaagggaacgctccg
gccccgcctcctccgcctcccggtgtccccgactgtcccatctgcggccagaagttcaag
tcccagaagagtcgctcggcccacctgaagcgctgctcctcggacatgggcgtcgctccg
gccgtgctgctgcaggctctgcagaggcagaccgaggaagcccaaagcgcccccagaggt
cacgcgctcccgcaggctggcggcaccaagagaaaagggtcgtccaagccgggcctgccg
gtgaggaagaggccgaggaagaagacggcgcccctggacgaagaggccatggtggccctg
gcgttgtcctcctccctgctggaccaggagcagcgggccaagagatcccaaactaacgct
gctgcctcgcacatcgccatgacgacagcattgaaggggacagacacagttaagaggcgc
aggaagaggaaaaagggcggcgcccctcgccctcctccgctcctcctcgtccaggaggcg
gaggcggcgctggcgaggctgcaggggcgcgtctctgccctcctcctgcgcagccgcgcc
ccctccccccccaccccgccccgccgccccagcagactgcccggccggagcgccgctgcc
gtcctctggcagaagagcacgctgctgggcggagcctccgtccgtctgtctgacttctac
acccccgagctccgggagttcatcgcgccgtgggaatcggcagcgacggatgcagcctcc
tccagcctcgccgacgggcctcagccttacgtccaaccggtgagtgaagggacccccgac
ccggagaccggggcctcccagatgtcctcctctccgccggctctctccgccagccgggcg
ctcctcctggacctgatggagctggctgaagatggcctgaccctcacccagtgtggtcac
cctgcgtcaggccctgaccacgatgagcgggccggtcagatctcaaaccctcgcctgagc
ggcttcgtcctggaggagtccgaggagccggccgagctccgtgcgagcggcttcctgcca
gaaccgaggagggggacgacggctcggtcccccgagcggggcggccaccgctcggtggcg
ctgtccagactggcctccgacctgagcagcttggtgaacaaccctcagctcagtgacctg
cagctgcaggtggacagtggagaggtctactccgctcactccgtcctgctgtatgctcga
tgccccctgctggcagaaatggtccatgaaagtggttttggggtgcaggaggaaggcggg
cctgccgtccagcgagtgttgctgaacgacgtcccgggccgggcggtgttggccctgctg
cagttcctctacacggcccgctgctccgtcccggcggcgctccggactcacgtgctggag
ctggcctctcggtttgacttgcaggagctacaacggctttgcgagcatcaccaacgggac
ccggagactctgggaggtgaggaagaccacgggaaccaggaggagaaccaccaggaggag
aaccaccaggaggagaaccagcaggccttcgcggagctgctgcgctccatgtgggacgga
gaggatgaagacgagggccccggtgcagatggaggacggcacgaagagggggagtcggaa
gaccatcgggccgacgacctcgcgtcacgggaccgggagatccgcgaggagaacgtgaac
gaggaagagctcgaggagatctacgagttcgccgccacgcagaggaagagggaggaggaa
gaagacagcactgaggaggaggaggaggaggaggaggagaagggggacgaggaagaggac
ggagagaaagtgttcacgaaaccggcggaaccccaaagaagtccgccgggcctcggcctg
gatctcagctacagccgcctcttctcagactcctggggggtctccgcggggccttcctcc
tcaccctcctcttcggcccccgctaagacccccccccctcaaccctcatctggaccctct
ttgcttcggtcctcagcgagcgtggttgacgacctttccgcgtccagcctgcctgtgctg
ggtcggtctccgggtccagcgggtgaccggggcggcgccggagacgaggggacggaggat
ccggcgttgaagtgcaccggtcctcgtggcgtttgggtccctctggacaatcaggaccct
gagctcattgtgttgtccgactccagcgaggaggtggaggtgtttcccccccgcagtcct
tcgccacatccctctggcgccgtccagaagccgcagagctacacccagttaaaacctccg
ccggtcccggaacccgacgagcagaagaaccggcccaggagtttagagcggagtcccgat
gacccgtctgcggcgccagctcaaatccatctggacccctggtctgagcaggatccagcg
gactgttctccagaactgtcctggctgatcccgtccacgccggtccagcccgggagacgc
accgcgaccggcgccacgcagactccgagcagcgtgtgccggacgcagctgttccctaaa
ggcgaagcttcccccgcttcgccgattgtcaccaaccgagtgcaaacctcccacagccct
gactccgcccccgtttgcccaccagggggcggagctcccccgttgatgctggacgagact
cgccgctccagcgtcgacctcgacttctgttcccagagccctgagctctcgcgctcgccg
ccctcgaagcgggaagcgcgcctctgcgtgcggccgccgccgtgcagcagcacgccgctg
cacacggagctccgcgggggccccgcccctctgcgcggcgaccccgaggagagtcggaca
agtccaggaaaggacggggcgccgcccgagagcccggaggagacggagttggggagcttt
cgcctttcgctcgcgtctgacccctcgcatccgccctcctcctcctccggtggcggaggt
cttcgggggtcacggaggcagagcggatcctccggtcggagccgtcgctccgcggggtcc
agcggtcacgacgacactgggtctgagctcaaggggagaggattaggaaaggacagggga
gaaggagagaggggaggaggagagaaagacacgggtgatgagggcgagcaggaggacgca
gcggagggcgaggcgggtgttgcccaatccagtttccagcggcgctccgtggacgagccc
cccatggcgttcggcgactcgtggggcctcgacgccgtcgacctggaggtgaccccgggc
tgcttcagcctgaggctggaggacagcggagcgtccagccagcagggtcaacgagacgca
gccaggtcgtcctccgctgccggccgccgtgtccacctaccggacggtcatgtgacctcc
tcccctcccccctcagcccacagcgcacaagcccgtgggggcgtttccttcaccccgtcg
cctcctgacccctccagccagaccaccccagaggtcatcaacagcctgctgggctccaac
atatgggacagctgggatgaggaagaggagaaggctcctcctcttcctcagagggcgaac
cctttggctcagctcagaacaccagcgccgtcacgcaggaaccagcagcgccccgtggtg
cccatcacgccgctgcccccctactctgacatggacacgccggagctcaagaacaagctc
aacaggtttggggttcggcctttaccgaagcgccagatgatcctcaaactgaaggagatc
caccagtacacccaccagctggtcagctctgaggaagaggaggaggaggaggaggaagga
ccctcggccacagttccgacgaatcgcccgaccgccgggtcacacgttcctggagaccga
gcggtctcctgcacccagagagtgaagttcaaagagcccacagcgccgcccagagaggag
gaggaggaggaggaggaggcggggcttcattctgcctcgcagggctccaacagctcgtca
accgccgccagtgaagactctgaaagcaggtccaaccccgagctgtgcctcccctccgac
tccgacagcgacggcggcatctcggcctcccagacggcgagccgccaccaggaccgtctg
cgggcggtgcgctccttcatcctggccgacccgcggctgtacggtcagatcctgcggtac
cggcctctggtgctgtctcagttccaggagcgcctcaaagcggccgggatccgtctggct
gccaccaagctgctggactacctggactcccagtgcatcaccgtcaccacggccaagccg
ggccacaggaggcggggccagaggcccaaggcagcgggggaccggggggcgggccgcaga
agaccggctacggcccccagttaa
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