KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130189818
Entry
130189818         CDS       T09868                                 
Symbol
aptx
Name
(RefSeq) aprataxin isoform X1
  KO
K10863  aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    130189818 (aptx)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pswi03400]
    130189818 (aptx)
Enzymes [BR:pswi01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.1  In phosphorus-containing anhydrides
    3.6.1.70  guanosine-5'-diphospho-5'-[DNA] diphosphatase
     130189818 (aptx)
    3.6.1.71  adenosine-5'-diphospho-5'-[DNA] diphosphatase
     130189818 (aptx)
    3.6.1.72  DNA-3'-diphospho-5'-guanosine diphosphatase
     130189818 (aptx)
DNA repair and recombination proteins [BR:pswi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     130189818 (aptx)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     130189818 (aptx)
SSDB
Motif
Pfam: DcpS_C FHA_2 zf-C2HE HIT zf-C2H2_6
Other DBs
NCBI-GeneID: 130189818
NCBI-ProteinID: XP_056264734
LinkDB
Position
24:complement(11377424..11381015)
AA seq 340 aa
MPICRLISDENSHKPIRLPHQQTVVLGRGPETTIKDRKCSRQQVEFKAECNKGYVKVKQL
GVNPTSIDSVVVGKDNEVKMKAGQQLHIVNQLYPYTVQFKEDPTGHYGGTKRPRQLSSED
RESLREDQSVKAAKKTETVSVSVSVGEATKSTVREGRKKESFGHWSQGLKTSMNDPKMQV
YKDDKVVVIKDKYPKARYHWLVLPWQIISSLKALSEVHCDLVKHMQQVADQIVRQCPDAG
LLRFRTGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFTTDYFMESHDVIQMLETNGR
VDVKEGTSELLKLALRCHMCLKDIPTIPALKEHLKSHFPS
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgccgatttgccggctcatcagtgatgagaatagtcataaaccaattcggctgccacac
caacagacagttgtcctgggtcgaggtccagagacgactattaaagacagaaaatgctct
cggcagcaagttgaatttaaagcagagtgcaacaaaggttatgttaaagttaaacagctg
ggcgtgaaccccacctccatagattctgtggtggtgggtaaggacaatgaggtaaaaatg
aaagctggacagcagcttcatatagtcaaccagctctacccatacactgtacagttcaag
gaggatcccaccgggcactatggcggcaccaaaagaccacgacaactgtcttcagaggac
agagagagcctcagagaggatcagagtgtgaaagcagccaaaaagacagaaacggtctcc
gtttcagtcagtgttggagaagccacaaaaagcactgtaagagaaggaaggaagaaagaa
agttttggacattggagccaaggtctgaagacatcaatgaatgacccaaagatgcaggta
tacaaggatgacaaggtagtggttatcaaagataaataccccaaagctcgctatcactgg
ttggtcctcccgtggcagatcatttccagtctgaaggccttaagtgaggtgcactgcgat
ctggtgaaacacatgcagcaagttgctgaccagattgttcggcagtgcccagatgctggc
ttgctacgtttccgtactggataccatgccatccccagtatgagtcatgtacacctccat
gtaatcagccaagactttgactctccttgtttaaagaacaaaaaacactggaactcattt
acaactgactatttcatggagtctcatgatgtcattcagatgcttgaaacgaatggaaga
gttgatgtgaaagaaggaaccagcgagttgttaaaactagctctccgctgtcacatgtgt
ctcaaagatattcctactataccagctctgaaggagcacctaaagtctcactttcccagc
taa

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