| Entry |
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| Name |
(RefSeq) LIM and calponin homology domains-containing protein 1-like isoform X1
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| KO |
| K24422 | LIM and calponin homology domains-containing protein 1 |
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| Organism |
pswi Pseudoliparis swirei (Mariana hadal snailfish)
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| Brite |
KEGG Orthology (KO) [BR:pswi00001]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:pswi04990]
130189905
Domain-containing proteins not elsewhere classified [BR:pswi04990]
LIM domain-containing proteins
Other lim domain-containing proteins
130189905
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
24:6503686..6529363
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| AA seq |
1778 aa
MASPAPGRDVPNASPRDEPGPNHPEPACLEAQKWIEAVTGKSFGDKDFRSGLENGILLCE
LLSAIKPGLVKKINRLPTPIAGLDNLSVFLRGCEEFGLKGSQLFDPGDLQDTSTRANLKD
CNRKIKNVLNTVFWLGKAAGGCASYSGPTLNLKEFEGLLAQMKVESEDSSQMRSVRDSGY
DCWDSERSDSLSPPRHTRDDSLDSLDSFGSRSQHSPSPDVANRGNGDGRGSDSEADAPSR
RPDVRKDDMLARRTASSESRVSIPFNQFLPNRTNNSSYIPTPRRKPHTEEGEQRSHPQAP
SEQCKRTGLHHKTPKSVTWAPEDNGEEVKQEEEKVTQEVLEQKTLQKLEKTGIKDLPAAV
RFSSPPTLEEQEVRSPSPNIILRCDNDFLSSQKSAWDSSSDVEEEADARKVPDVRKDDLA
SRRAPRGPVAPRVHQFVPQPVCSSKDRERWEGIRRASQQSLQEKEISEKEAVPDIMTRRD
NPFLNSAPRHEDGEDGEEEEGKVTATPNKQKDDLARRRAQSKPLPQRDGPVSLVSASMSQ
ADMQKWKRLKMTEPSEACPSSPVCQACLETNVGDPFSGPAKAGRSQSKVVTFGGVTEIEQ
PVDTVMSSEGEEKELLRRLLSKATVAMPTIGLGSQLSERERSQVDGADLNQTTPPSAVLP
LCSPESPSPPAEMDTRLAHYERRTDGGEEEDDDDEEEDKIPDPQKDDMMARRTGVFHKQS
TAPVTYNRFLPLPSTKRCTQGEVATDAAPRNKRDVQAARSKELNARSFSHSVRAEQHPPR
VPMETPQLHPDTTAIRATSHSQFEYEDDDGDEYDENEPEPDLEKDDMMARRTRSFQKTDA
ARTNKPINRFLPVPGSVKYNVAPVSAMKPLRNRLKLTEKLATESVVAMVAEPQALLSKAP
TLPKCAGPRERQAEGGKQEGGVATPQSSVTGVTEPLSSPSLTPPPLRPAAARACKVEAEL
GNQGVEERVEETVEEREKDVNREPRRKPFWLDDDDLPPIMMSRRVAFMSEDTESVSMSDI
LNEEEVEHLPPLSQSRYERRHEQSNNFQDDDDHWQSELARWKNRRRSTSQELIKKEEERK
RMEKRMKEEGSGSNKRKSIKTYKEILEEKERRESELCDAYRNAATPEEASVVLQRYALRF
TISDATLDSLKLPRYPANPKQDLHPADREHKTTSPTNESSQPPNKLEPPVIKDQSHAEPG
EMKTDVTAQQETSVSSSSPAAGGPLGPVTNSENVPPQSLEVNEPRSKPTPTTRPKQPIAG
DAKPQPKHSEAAHVPPHSTRPGHALPSPPSVAPRPVPLLAAKPYCQPRSAQSGHKPVKMD
GLVRVNGEVKVDLSVSTSPTSACHSPPEVKDNPSKMMEKDVPSEKTGKDVPSEKTMKDVP
SEKTVKNVPLEQTEKDVPPEQISAYQETVEETPSPQTERSSSSLGSAISSLIGGRNCIIT
TTIVTELTHVEPHQPDSQSNAQVNGTSGFSESPVEGKKAPPASPPNRMQESSPTVTEGLE
ESSVTIETPMLNLAKRVNHWVWDPNEERKRLESWQQEQERLLQEQYQREQEKLKKEWEKA
QLEVQEEGRKHNEEERRILEETVQPLNQTGFVNQQSGQMGTTSSAPEHNQTERGNVAPQQ
NGQSTSTGNEGQHVSKLHFLQDSACDGEPLMKQELWKTASLDRNPQLNQAHIAQRSESHG
AVTNKQQPSALSPQPPSHSRSVSGKRLCSGCSQPLEKGAAMIIDTLGLFFHIQCFKCGAC
KGQLGDATAGTDVRIRNGLLSCHECYIASRGRGQPTTL |
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| NT seq |
5337 nt +upstreamnt +downstreamnt
atggccagccccgctccaggtcgagatgtcccgaatgcttcgccgagggacgagccaggg
ccgaaccatcccgaaccggcctgtttggaggcgcagaaatggatagaggctgttacgggg
aagagctttggggacaaggacttccgcagtggattggagaacggcatcctgttatgcgag
ctgctgagtgcaatcaaaccggggctggtcaagaagatcaacagactgcccacccccatc
gctgggctggacaacctgtccgtcttcctgcggggctgcgaggagtttggcctgaagggc
tcccagctgtttgaccccggggacttgcaagacacttccactcgagctaacctcaaggac
tgcaaccgcaaaataaaaaatgtgctgaacactgtgttctggctcggcaaggctgccggc
ggctgcgcctcctacagtggccctactctcaacctcaaggagtttgaagggcttcttgct
caaatgaaggtggagagtgaggacagttcccagatgcgcagcgttagggacagcggctac
gactgctgggactccgagaggagcgattctctgtctccaccacgacacactcgcgacgac
tccctagacagtttggactcctttggctctcgctcacagcacagcccttctcctgatgtg
gcgaatcgaggcaacggtgatgggcgaggcagcgactcggaggccgatgctcccagcagg
aggccagatgtgcggaaggatgacatgctggccagacggactgccagcagtgaatcacgg
gtctccattcccttcaatcagtttcttcccaaccgaaccaacaacagctcctacatcccg
actcctcggcgaaaaccacacacggaggaaggagagcagcgcagtcaccctcaagcccct
tcagagcagtgcaagagaaccggacttcatcacaaaactcccaagagtgtcacttgggcg
cctgaggataatggggaggaggtaaaacaggaagaggagaaggtgactcaggaagtgttg
gagcagaagacgctgcagaagttggagaagacgggaatcaaagatctgcccgctgccgtt
cgcttcagcagccctcccacactggaggaacaggaagtgaggtcaccgtccccaaacatc
atcctccgctgcgacaacgactttttgagctctcagaaatctgcgtgggactcctcctcc
gatgtggaagaggaggcagatgcgcggaaagttccggatgttcgtaaagacgacctggca
tcccggcgagcccctcgcggccccgttgctcccagggtgcatcagtttgtcccgcaacct
gtctgtagcagcaaagaccgagagcgctgggaaggcattcgacgagcctcgcagcagagc
ctgcaggagaaggagatcagtgagaaagaagcagtccccgacatcatgacacgcagagac
aacccgttcctcaactccgcccctcgccacgaggatggggaggatggggaggaagaagag
gggaaggttacggcgacccctaataagcagaaggatgacttggctcgtaggcgggctcag
agtaagcccctcccacaaagggacggaccagtgagcttggtttctgcctccatgagccag
gcagatatgcagaagtggaaaagactcaagatgactgaacccagtgaggcttgcccgtcg
tcccctgtgtgtcaagcttgtctggagacaaatgttggggatcctttcagcggaccagca
aaggctggacgaagtcagagcaaagttgtgacctttgggggcgtgactgagatcgagcag
ccagtagacacagtcatgtcaagtgaaggggaggagaaggagttgctaagacgactcctt
tccaaggcaactgtagccatgcctaccattggcctgggctcccagctttcagagcgggaa
cgcagccaggtagacggagctgacctcaatcaaaccacacctccttcagctgtcctccca
ctctgctcccctgaaagcccctctcctcctgctgagatggacacgcgcctggctcactat
gaacggaggacagatgggggggaggaggaggatgatgatgacgaggaagaggacaagatt
ccggatcctcagaaagatgatatgatggctaggaggacaggagttttccataaacaaagc
acggctccagtgacctacaaccgtttcctgcctctgcccagcaccaagcgctgcacacaa
ggcgaggtcgccactgacgctgctccgaggaacaagagggacgtgcaggcggccaggagc
aaggaactgaacgccaggagtttctctcatagtgtcagagcggagcaacacccacccagg
gttcccatggaaacgcctcaacttcacccagacacgactgcaatccgagcaacgtctcac
agccagtttgaatatgaagatgacgacggggatgaatatgatgagaatgagcctgagcct
gacctggagaaggacgacatgatggctcggaggaccagatcgttccaaaaaacggatgcg
gccagaaccaataagcccatcaaccggttcctgccggtccccggatcagttaaatataac
gttgccccggtgtcggcaatgaagccgctgcgcaacagacttaaactcacagagaagctg
gcgactgaaagcgtcgttgccatggtagcagaacctcaggctctgctctccaaagctcca
accctccctaagtgtgcagggccgagggagcggcaggccgagggtggaaagcaggaggga
ggcgtggcaacccctcaaagctctgtcacgggcgtgaccgagcccctctcctccccgtcg
ctcacccctccacccctccgtccggcggcggcccgggcctgtaaagtggaggcggagctg
ggaaaccagggtgtggaggaaagagttgaggaaacggtggaggagagagagaaggacgtg
aacagggagccacgaaggaagcccttctggctggatgacgatgatctacctcccatcatg
atgagtcggcgagttgcgtttatgtctgaggacactgagagcgtgagcatgagtgacatt
cttaatgaggaggaggtggaacacttaccaccactgagccaatcacgatatgagcggagg
cacgaacagtccaacaactttcaggatgatgacgaccactggcaaagcgagttggctcga
tggaagaatcgtcgtcgcagcacgtcacaggaactgatcaagaaagaggaagagaggaag
aggatggagaaaaggatgaaggaggagggaagtggcagcaacaagaggaaaagcataaag
acctacaaagagatcctggaggagaaggagcgcagagagtccgagttgtgtgacgcctac
aggaatgctgcaactccggaggaggcctccgtggttttacagcgctacgctcttcgcttc
accatcagtgacgcgacactggacagtctcaagctgcccagataccctgcaaatcccaag
caggaccttcatccggcggacagagagcacaaaacgacatcacctaccaatgaatcgtca
caaccgccgaacaaactggaaccgccggttataaaagaccagagccacgcagaaccggga
gagatgaagactgatgtaaccgctcaacaagagacgtcagtctcctccagctccccggca
gctggcggccccctcggcccggtcacaaactctgaaaatgtgccacctcagtctctcgaa
gtgaatgaacctcgatccaaaccgactccaaccacgcgaccaaaacaaccgattgcagga
gacgcaaagcctcaacccaaacacagtgaggctgcacatgtgccgcctcacagcacacgg
cctggacacgcactcccctcacctccatccgtagcccccagacccgtccccctgctggca
gccaagccctactgccagcccaggagcgcacagtctggacacaaacccgtcaagatggac
gggttggtgcgagtgaacggagaggtgaaggtggatttatctgtttccacttcgcctacc
tctgcttgtcactcacccccggaggtcaaagacaatccgtcaaagatgatggagaaagat
gttccctctgagaagacagggaaggacgttccctcagagaagacaatgaaggacgttccc
tcagagaagacggtgaagaacgttccattagagcagacagagaaagatgttccccccgag
cagatttcggcctaccaggagacggtggaggagacgccgtctcctcagacggaaagatcg
agctcgtctttaggctctgccatcagctccctgattggaggacgaaactgtatcatcacg
acaaccattgtgacagagctcacacacgtggagccacatcagccggacagccaaagcaat
gcacaggtcaacggcacttctgggttttccgagagtccagtggagggaaaaaaggctccg
ccagcttcaccgccaaacagaatgcaagaatcctctcccactgtcacagagggacttgag
gagagcagtgtaactattgagacccccatgttgaacttggctaaacgtgttaatcactgg
gtctgggaccccaatgaggaacgtaaacgcctggaaagttggcaacaggagcaggagcgc
ctcctacaggagcaataccagagagaacaggagaagctgaagaaggagtgggagaaagca
caactagaagtgcaggaggaggggagaaaacacaatgaagaggagagaaggatcctagag
gagacggtacagcccttaaatcaaacgggtttcgtaaaccagcagtcgggccagatgggg
acgacttcgtcagcgccagaacacaaccagacagagcggggaaacgtcgctccgcagcaa
aacggccaaagcacctccacggggaacgagggtcagcatgtgtccaagctgcactttctc
caggattctgcatgtgatggtgagcctctaatgaaacaagaactgtggaagacggcctct
ctggaccgcaaccctcagctgaaccaggcacatattgctcaaaggtctgaatcacatggc
gctgtaacaaacaaacagcagccgtctgctttgtcacctcagcctccctcacacagcaga
agtgttagtgggaagagactgtgttctggttgttctcaaccactggaaaaaggagctgcc
atgatcatcgatacactgggactgtttttccacatacagtgttttaagtgtggagcgtgc
aaagggcagctgggggacgccactgctgggactgatgtacgaattcgtaatggactgctg
agctgtcatgagtgctatattgcatctcggggcagaggtcagcccaccacactatga |
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