Pseudoliparis swirei (Mariana hadal snailfish): 130189920
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Entry
130189920 CDS
T09868
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130189920
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130189920
Spliceosome [BR:
pswi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130189920
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130189920
NCBI-ProteinID:
XP_056264908
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Position
24:complement(19672248..19677808)
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AA seq
427 aa
AA seq
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MAETDVDNDLLDYEEDEEPQVAPETATPANKKEVKGSYVSIHSSGFRDFLLKPELLRSIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKVSVFFGGLAIKKDEEVLKKNCPHIVVGTPGRTLALIR
NKTLNVKNIKHFVLDECDRMLEQLDMRRDVQEIFRVTPHEKQVMMFSATLSKDIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVHRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEEIDIS
SYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaccgatgttgataatgaccttttggactacgaggaggacgaggagccccag
gtagcccctgaaactgcgaccccagcaaataagaaggaagtgaaggggtcctacgtttcc
attcacagctcaggtttcagggactttctcctcaaaccagagctgctgcggtccattgtc
gactgtggatttgagcatccctcagaagtccaacatgagtgtattccacaagctatactg
ggcatggacatcctgtgtcaggcgaagtccgggatgggaaagactgccgtgtttgtactg
gccaccttgcaacaaatagaacctgtggatggtcaggtgtctgtccttgtaatgtgccac
acgagagagttggccttccagatcagcaaagagtatgagagattctcgaagtacatgcca
acagtcaaggtgtcggtgttcttcggcggcctggccatcaagaaggacgaggaagtgctc
aagaagaactgccctcacattgttgtaggaactccagggcgtaccctggccctaatccgc
aacaagaccctcaatgtgaagaacatcaaacactttgtgcttgacgagtgtgataggatg
ctggagcagctggatatgagacgcgacgtccaggagatcttcagggtgacgcctcatgag
aaacaggttatgatgtttagtgcgacgctaagcaaggacatccgccctgtctgtcgcaag
ttcatgcaggatcccatggaagtgttcgtggatgacgagaccaagctgacactccacggc
ttacagcagtattactgcaagttgaaggacagcgagaaaaaccggaagcttttcgacctg
ctcgacgtactcgagttcaaccaggtggtgatttttgtcaaatcagtgcatcgctgtgtt
gctctgtcccagctgctggtggaacagaatttccccgccatcgccatccacaggggcatg
gcgcaggaggagcggttatcccggtaccagcagtttaaagacttccagcggcgaatcctg
gttgcgaccaacctgtttggtcggggcatggacattgagcgagtcaacattgtcttcaac
tacgacatgccagaggattctgacacataccttcacagagtggcccgtgcgggcaggttt
ggtaccaaaggcctggccgtcacctttgtgtctgacgagactgacgccaagaccctcaac
gatgtccaagaccgctttgaggtcaatgtagcagagctaccagaggagatcgatatctcc
tcctacattgaacagtccagatga
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