Pseudoliparis swirei (Mariana hadal snailfish): 130189951
Help
Entry
130189951 CDS
T09868
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130189951
03036 Chromosome and associated proteins [BR:
pswi03036
]
130189951
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130189951
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130189951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
Neur
Mei5_like
THOC7
Motif
Other DBs
NCBI-GeneID:
130189951
NCBI-ProteinID:
XP_056264963
LinkDB
All DBs
Position
24:18832204..18891721
Genome browser
AA seq
1932 aa
AA seq
DB search
MEEKKKKKQEEKIKTDVAQKKAADQKPKVPEPAPTKPSPGPPHHLHQASPTLPLSSSSSG
NGKRAPSSSQLPTQTLPQQQLSSASARYPPREVPPRFRQQEHKQLLKRGQPLPAGALSAL
TLACSSSSSSSSPSGSHSSSKTASSTSPNSATSTAGKRHPDVSLQSGSVAQYETSRWGDS
LPVDSANSWDKVIIDRSDKEVWLSISHSSDPGHPAEPECSLGSASSNTDTSACTTTSSNC
FPTMATGAAGQQAHYSSLKANNNMMTGPGSANTCSSRGWGSDGKQEGMNGGRVGAPNNWG
STNFNLNLNPNANPSAWPVLGQEGGGGCGIGPNVVSNSPSLPPGINGNMGNGSLGGADNG
GGGWGGMMSASENDQQHPSTNTSLSFKMEPSNLNNDGPNCTKQQQQQAQEPMSPIHGITG
WGGQSPTESSQLNGDTTCSTGWGSGETKAVDSPKDPGWDSTPSGGLSGWGRQGSGGGSSG
SGGYCDWGKSSSGGEASKGWDSVDAGSSGSGQEQQHSSWGQQPRTAPVSDGNGASSESQS
GRDRSSSTDCTPLLPRQDLDPRVLSNTGWGQTPIRQHTVWEMEEAKSDEGKIKSSSASTG
CSSSNVRPSSINGGTIDPKTGPNQRPGSGEKSDNEGSSSSSGWRAPPPQPIQTGSGWGDP
PQSHSKTQNGNTSGWGDPLPPNAPRNKGTPSWSSEEKSSGWDDGMTKSQPTNWGEGPKSS
HGWGNGNGGSNSTSTGEWGEAEVKKNGSSNSMWEGEGGSGGNGGWKESPRGGNRGGGGGG
WNKPAPAPAPAPTPAPVPIPAVSNSSWGEIPRANGPVQGNWGSSKAQESSSSSSNGSGGG
GSMGSWGGPGTVKQNSSSWGNGSKQDQGMDPTGWEEPSPPSIRRKMEIDDGTSTWGNPAP
NSKTVNMWDRKNPNNNPGNSGPPPSKGGGVINNNNNNHSVGPGNNNPHHTHHMHHHPHHG
QPPPHMQHHGNNNGSSNHGPPHPSAGPQGRPALANPGWGEVPNVQLKSEPAWGEPAAPTS
SVDNGTSAWGKSSGGGGGWGDGGHESSGPYGRANGPTGSSACKPGPKPMQDGWGNGGEEM
GMSSGQWDAEDGDMWNSPTSQESSSSCNSWSNGPKKGPSKCKMGKPDEAWIMNRLIKQLT
DMGFPRDPAEEALKSNNMNLDQAMSALLEKKTDLDKRGRGMSDYSNGMNKPMVCRPSALS
KDPSDRTSFIDKDGVLSDDAPPSPFLPSPSLKLPLANSSLPGQGLGQGNPGLAMQNLNNR
QMPSGMFGSSGAAQTRAILQQPQPPVPPPSSSQPSLRAQVPQFLSPQVQAQLLQFAAKNI
GLNPALLTSPINPQQMTLLYQLQQLQMAYQRLQIQQQMMQAQRNVSGPIRQQEQQVARTI
TNMQQQIQQHQRQLYQALLMKQQQLPSHSSSSSAGMHNPGGHGSGKSTHDPYAGAHQAPG
LADTLHTKEPPSSPNAYSTYPLSGLNPNMNVNCMEVGVMSLKEPPQPQSRLSQWTHSHSM
DGLSGNSSNMENNLNKHGAISAGSSLGPPGKPHHLEDSYSPYNLMSRSESPTSPMVPQDG
WGQGKSPNEKISNGTNINWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPSGPTINTNIHD
VNRYLLRDKNGATPPALPLPNDSLPPTSNDWPVCGYSSSFLSLASSDGDDTGKLSDMKST
WSPGPISQGQSSLSHELWKVPQGPRSNAAPSRPPPGLTNSKPSSTWGGNSLGLAQGWSAS
YTSEGTTWSTDSPSRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRY
SSRDEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFFAQGQSQSLGANTTSWQANPGTNQ
NRMGGAAQSHPMNQWSSGGGGCGGKSSDLLWGGMPHYSSLWGPPSGDDARVIGSPTSINT
LLPGDLLSGESM
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaaaaaaaagaaaaaacaagaagaaaagatcaagacggacgtcgctcagaaa
aaggctgctgatcagaaacctaaagtgccagagcctgctcccactaagcccagtcccggc
ccaccccaccacctccaccaggccagccctacgctgcccctctcctcctcctcttctggc
aatggcaagcgcgccccctccagtagccaactcccgacccagactctccctcagcagcag
ttgtcctctgccagtgctcgctacccacccagagaggtgcccccgcgcttccgccagcag
gagcacaagcagctactgaagagaggccagccactgcctgcaggagccctcagtgctctc
accctcgcctgttcctcgtcctcgtcctcctcttcaccttcggggtctcactcttcttct
aagactgccagcagcacttccccaaactctgccacttccactgcgggcaaacgccaccca
gacgtatccctccagagtggctcagttgcccagtatgagacctctcgctggggagactct
ttgccagttgacagtgccaacagctgggacaaagtgattattgaccgaagtgacaaagaa
gtttggctctccatcagccacagtagtgaccccggccaccccgcggaaccagaatgctcc
ttgggctcagctagctctaacacagacacaagtgcttgcactaccaccagtagtaattgt
tttccgactatggccacaggtgccgcaggccagcaggcccactactcctctcttaaagct
aacaataacatgatgacaggacctgggtcagccaacacatgcagtagtagaggctggggc
tctgatgggaaacaagaaggtatgaatggtggtcgagtaggggcacccaataactggggc
tctaccaattttaacttgaacctcaatcccaatgccaacccatcagcttggcctgttctg
ggccaggagggtggtggaggttgtggtattggtcccaatgtggtgtcaaactccccatcc
ctcccaccaggtattaatggaaacatgggaaatgggagcctgggaggtgcagataatggc
gggggaggttggggtggcatgatgagtgctagtgaaaatgatcaacagcacccttcaact
aacacaagcttgtccttcaaaatggaaccttctaaccttaacaatgatggaccaaactgc
actaagcagcagcagcagcaagctcaggagcctatgagcccaatccatgggataactggc
tggggaggccagtcacccactgaatcatcccagctgaatggggacacaacatgcagcact
ggatggggtagtggagagaccaaggcagttgactctcccaaggacccaggctgggactca
actccctctggaggcctttctggttggggccggcaaggcagtggtggtgggagtagtgga
agtggtggctattgtgactgggggaaatcctccagtggcggtgaggcatctaaaggctgg
gactcagtagatgctggaagctctggttcaggccaagagcagcaacatagctcatggggg
cagcagcccagaacagccccagtgagcgacggtaatggggccagcagcgaaagtcaatct
ggccgagataggtcctccagcacggattgtacccctcttctaccccggcaagacctggac
cctagggtgctgagtaacacgggttggggacagaccccgatccgacagcacactgtatgg
gagatggaagaagccaaatcagatgaagggaagatcaaaagtagctcagcctccacagga
tgctccagctctaatgttagaccctcatccatcaatggaggtaccatcgacccaaaaacc
ggccctaatcagaggcctgggtctggagagaaaagtgacaatgaaggatcatcatcttcc
tctggctggagagcccctccacctcagcctatccaaaccggatcaggatggggggacccc
ccacagtcccatagcaaaacgcagaatggcaataccagtggctggggggaccctttgcct
cccaatgctcccagaaataaaggcacaccctcctggagttctgaagaaaagtcatccggt
tgggacgatggcatgacgaaaagtcagccgactaactggggagagggccccaaaagctcc
catggatggggcaacggtaatggtggctccaacagcacaagcacaggagagtggggagag
gcggaggtcaagaagaatggatcatccaacagcatgtgggaaggtgaaggaggtagtgga
ggaaatggtggatggaaggagagccccaggggaggaaatagaggcggtggagggggaggc
tggaataagcctgcgcctgcgcctgctcctgcacctactcccgctcctgttccgattcct
gctgtgagtaatagcagctggggggagatcccacgtgccaatggcccagtgcaggggaat
tggggctcttctaaggcccaggaaagcagcagcagcagcagcaatggcagcggaggaggt
ggcagcatgggttcatggggtggtcctggtactgtgaagcagaactcatcgagctgggga
aatggcagcaaacaggaccaaggcatggatcccactggctgggaggagccctcccctccc
tctatccgcaggaagatggagattgacgatggaacgtccacctggggcaatcctgccccc
aacagcaagactgtcaacatgtgggatcgcaaaaatcctaataataacccaggaaacagc
ggcccaccgcccagtaagggtggtggagtgatcaacaacaacaataacaatcactctgtc
ggccctggcaacaacaatccccatcacacccaccacatgcaccaccacccccatcatggc
cagcccccacctcacatgcaacaccatggaaacaacaatgggtcatccaaccacggcccc
ccacatccaagtgcaggcccccagggtagacccgccctcgccaacccaggttggggagaa
gttccaaatgttcagctcaagtcagagcctgcttggggagagccagctgctccaacatca
tctgtggacaatggcacctctgcctggggaaagtcttcaggtggtggaggaggatgggga
gacggtggccacgagtcctctggtccctatggcagggccaacggacccacaggttcttca
gcctgcaagccaggtcccaaacctatgcaagatggctggggaaatggaggggaggagatg
ggcatgtctagcggccaatgggatgctgaggatggggacatgtggaacagccccacctcc
caggagagcagctcttcttgcaactcctggagcaatggacccaagaagggcccgagcaag
tgcaagatgggcaagccagatgaagcttggatcatgaaccgtctcatcaaacagctcact
gacatgggctttccgagagaccctgctgaggaggcgttgaagagcaacaacatgaacctt
gaccaggccatgagcgccctgttggagaagaagacggacctggacaagcggggcaggggc
atgtctgattacagcaacggcatgaacaagcccatggtgtgtcggccctctgctctctcc
aaagacccctcagaccgcacatcctttattgacaaggacggtgttctgtcagatgatgcc
cccccatcaccgtttctgccttcccccagcctgaagctccccctggccaacagtagcctt
cctgggcagggtctgggacagggcaacccggggctggccatgcaaaacttgaacaacaga
cagatgcccagtggaatgtttggcagtagtggagcagcacaaacccgggcgattctgcag
cagcctcagccaccagtgccacctcccagctcctcccagcctagtctacgtgctcaagtg
cctcagtttctctcccctcaggtccaagcacagctcttgcagtttgcagcaaaaaacatt
ggtctgaaccctgcacttttaacctcaccaataaaccctcaacagatgactctcttgtac
caacttcagcagctgcaaatggcgtaccagcgtttacaaatccagcagcagatgatgcag
gcgcaacgcaatgtttccggccccattagacaacaagagcagcaagttgcgcgtacaatc
accaacatgcagcagcagatccagcagcaccagcgtcagctgtaccaagcgctgttgatg
aagcagcagcaacttccctctcactcctcctcctcctccgccggtatgcataaccccgga
ggccacggttccggcaaatcaacccacgacccctacgcaggcgcacaccaggctcctggt
ctagccgacacactgcacaccaaagagccgccgtcttcgcccaacgcctacagcacctac
cctctctctggactgaatccaaacatgaacgtaaactgcatggaggttggggttatgtcc
ctgaaggagccccctcagccccaatcccgcctgtcccagtggacacactctcactccatg
gacggcctctctggcaactcctctaacatggagaacaacctcaataagcacggtgccata
tctgctgggtctagcctgggcccccccgggaagccccaccatctggaggactcgtacagc
ccttacaatctaatgtcccgctctgagtcccccaccagccccatggtgccccaagacggc
tggggccagggcaagagccccaatgaaaagatctccaatgggaccaacattaactggccc
ccagagttctgcccaggtgttccatggaagggccttcagaacatcgaccccgagaatgac
cccaacatgacccctggcagcgtccccagcggccccaccatcaacaccaacatccacgac
gtcaaccgatacctgctgcgggacaagaatggagccactcccccagctctgccacttccg
aatgactctctgcctccgaccagcaacgactggccagtctgtggctactctagctctttt
ctgtctcttgcgtcctctgacggagacgatacaggcaagctgtctgacatgaagtccacc
tggtccccggggcccatctcccagggccaatcctctttgtcccacgagctgtggaaagtc
cctcaggggccgcgcagcaacgctgccccttctcggcccccaccaggcctcaccaacagc
aaaccctcctccacctggggcggcaactcgctgggcctggcccaaggctggagcgcctcc
tacacctctgagggaaccacctggagtactgacagccccagcaggaccagcagctggctg
gtgctgaggaatctcaccccacaaattgatggttccaccctgcggacgctgtgcttgcag
cacggccccctgatcacattccacctcaacctgacccagggcaacgccgtggtgcgctac
agctccagggatgaggccgcaaaggcccagaagtctctgcacatgtgtgtgcttggaaac
accaccatcctggcggagtttgccggcgaggaggaggtgaaccgcttctttgcacaaggc
cagtcccagtccctgggggctaacaccactagctggcaggccaacccaggaaccaatcaa
aaccggatgggcggggcagcacagtcccaccctatgaaccaatggagcagcggcggcggt
ggctgcggaggcaagtccagcgacctgctgtggggcggcatgccacattactccagcctg
tgggggccgccgagcggagacgatgcccgcgtgattgggagccccacctccattaacacc
ctgctgcctggagatctgctgagtggagagtccatgtag
DBGET
integrated database retrieval system
