Pseudoliparis swirei (Mariana hadal snailfish): 130190064
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Entry
130190064 CDS
T09868
Symbol
pcdh10a
Name
(RefSeq) protocadherin-10a isoform X1
KO
K16499
protocadherin delta 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130190064 (pcdh10a)
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Protocadherins
130190064 (pcdh10a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
DUF4621
Motif
Other DBs
NCBI-GeneID:
130190064
NCBI-ProteinID:
XP_056265222
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All DBs
Position
24:26784811..26811453
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AA seq
1055 aa
AA seq
DB search
MIGLLFLLLSVLDGAVSQLHYTVPEEQEPGSVVGNIAEDLGLDITKLSARRFQTVPSSRT
PYLEVNLENGALVVKEKIDREEICKQTIPCLLHLEVFLENPLELFRVEIEVMDINDNPPS
FPETDISVEISESAIPGTRFPVENALDPDVGTNALSTYAITSNNYFYLDVQTQSDGNKFA
ELVLEKPLDREQQAVHRYVLTAVDGGIPQRTGTALLVVKVLDSNDNAPTFDQSVYSVNLR
ENSPVGTLIIQLNATDVDEGQNGEIVYSFSSHNAPRIKDLFDIDARTGRIEVAGEVDFEE
SNTHQIYVQAKDLGANAVPAHCKVLVKLVDANDNAPEIGFSTVTESVSEQDAPGTVIALF
SVSDRDSGENGHVSCELLGDVPFKLKSSFKNYYTIVTDGPLDREHTDSYTITVVAKDKGQ
PSLAASKSIKVHVSDENDNAPRFTQAVYDVYVTENNVPGAFIHAVSALDPDVGQNALITY
SILECDIQGMSVDTYVSINQDTGYLYALRSFDYEQLKEFGFMVQAKDSGDAELFSNTTVN
VIIVDQNDNAPAVIAPVGRNGTAKEHLPRSAEPGYLVTRVVAMDADDGENARLSYSILRG
NEMGMFRMDWRTGELRTARRISPKRDPQGFYDLLIEVRDHGQPPLSSSASVSVALVDSVV
ESRSGDRGSASKAKETSLDLTLILIIALGSVSFVFLLAMIVLAVRCQKDKKLDLYTCLLS
GECCLCCGSCCSRHARGRKQKKLSKSDIMLVQSTNVTSGVGPAGQVPVEESGVGGGGFGS
HHHQNQNSYCYQVCLTPESAKTDLMFLKPRSPSRGGDADHSKPCGAVVTGYGDQQPDIIS
NGSILSNEPKHQRAELGYLVDRPRRVNSSAFQEADIVSSKDSGHGDSEQGDSDHDATNRG
HSAGADLFSNCTEECKALGHSDRCWMPSFVPSDGRQGPDYRSNLHVPGMDATLPDTEVPS
SVELSDQPTVTSPTAASSADRSFSTFGKDGQRSQSHHSLHHHLHQQQQQPQYSSSTLERK
EYDRGTLPYKPTFPCEYQYESSLGPYDFGLVQNRY
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgattgggttactattcctcctgctctccgtcctggatggagcggtctctcagctgcac
tacaccgtgccagaggagcaggaacccggctccgtggttgggaatatcgccgaggatttg
gggctggacatcaccaaactttccgcgcgccgctttcagacggtgccgagttcacggaca
ccgtatctggaggtgaacttggagaacggggcgctcgtggtgaaggagaaaatcgaccgg
gaggaaatctgcaagcagaccatcccgtgcctattgcacctggaggtgtttctggagaac
ccgctggagctctttcgcgtggaaatcgaggtgatggatatcaacgacaacccgcccagc
ttcccggagacggacatttccgtggagatatcggagagcgccatccccggtacccggttc
cccgtagagaacgccttggacccggacgtgggcacgaacgcgctcagcacgtacgccatc
accagcaacaactatttctacctggacgtgcagacgcagagcgacgggaacaagttcgcg
gagctggtgctggagaagccgctggaccgggagcagcaggcggtgcaccgctacgtgctg
acggcggtggacggaggcatcccgcagaggaccggcaccgctctcctggtcgttaaagtt
ctggactccaacgacaacgcgcccacctttgaccagtcggtgtactccgtgaacctgcgg
gagaactctccggtgggcaccctgatcatccagcttaacgccaccgacgtggacgagggg
cagaacggggagatcgtgtactccttcagcagccacaacgcgccgcggatcaaggactta
ttcgacatcgacgccagaaccgggaggatcgaggtggccggcgaggtggacttcgaagag
agcaacacgcatcagatttacgtccaggcgaaggatttgggcgccaacgcggtgcccgcg
cactgcaaagtgctcgtgaagctcgtggacgcgaacgacaacgcgccggagatcggcttc
agcaccgtgacggagtccgtgagcgagcaggacgcgccgggcaccgtcatcgcacttttc
agcgtctcggaccgggactccggtgagaacggacacgtgagctgcgagctgctcggagac
gtcccgttcaagctcaagtcgtcgtttaagaactactacaccatcgtgacggacggcccg
ctggacagagagcacacggactcctacaccatcaccgtggtggccaaagataagggtcag
ccgtcgctggccgccagcaagtccatcaaagtgcacgtgtccgacgagaacgacaacgcg
cctcgttttacgcaggcggtttacgacgtgtacgtgacggagaacaacgtgcccggtgct
ttcatccacgccgtgagcgcgctggaccccgacgtggggcaaaacgcgctcattacttac
tccatattggagtgtgacatccagggcatgtcagtggacacgtacgtgtccataaaccag
gacaccgggtacctttacgcgctgcgctctttcgactacgagcagctgaaggagttcggc
ttcatggtgcaggcgaaggactccggcgacgcggagctcttctccaacaccaccgtcaac
gtgatcatcgtggaccagaacgacaacgcgcccgccgtcatcgccccggtcgggagaaac
ggcaccgccaaggagcacctgccgcgctccgcggagcccggctacttggtgacgcgcgtc
gtcgccatggacgcggacgacggcgagaacgcgcggctgtcctacagcatcctgcggggc
aacgagatgggcatgttccgcatggattggaggacgggggagctgaggacggcgcgcagg
atctctccgaagcgcgacccgcagggcttctacgacctgctgatcgaggtgcgggaccac
gggcagccgccgctctcctcctccgcgagcgtgagcgtcgcgctggtggacagcgtggtg
gaaagccgcagcggggaccggggctcggcctccaaggccaaggagacctccctggacctc
accctcatcctcatcatcgcgctgggctccgtgtcgttcgtcttcctgctggccatgatc
gtgctggccgtgcgctgccagaaggacaagaagctcgacctgtacacgtgcctgctgtcg
ggcgagtgctgcctgtgctgcggctcgtgctgcagccggcacgcgcgcggccggaagcag
aagaagctgagcaaatccgacatcatgttggttcagagcaccaacgtgacgtcgggggtc
ggccccgcggggcaggtgcccgtggaggagtccggcgtggggggagggggcttcggctcc
catcaccaccagaaccagaactcgtactgctaccaggtgtgcctgacgccggagtccgcc
aagacggacctgatgttcctgaagccgcgcagcccgtcccgcggcggcgacgcggaccac
agcaagccctgcggcgccgtcgtcacgggttacggtgaccagcagccggacatcatctcc
aacggcagcatcctctcgaacgagccgaaacaccaacgagcagaactcggctatctggtg
gaccgacccagacgtgtgaacagttcggcgttccaggaggccgacatcgtgagctccaaa
gacagcgggcacggcgacagcgaacagggcgacagcgaccacgacgccaccaaccggggt
cattcagccggcgccgacctgttctccaactgcaccgaggagtgcaaggccctgggccac
tcggaccgctgctggatgccgtccttcgtgccgtccgacgggcggcaggggccggactac
cgcagcaacctccacgtccccggcatggacgccaccctgcccgacactgaggtaccgtcc
tccgtcgagctctccgaccaaccgaccgtgacctccccgaccgccgcctcgtccgccgat
aggtcattctccacctttggcaaggatggtcaaaggtcacagtcacaccacagccttcac
catcacctccatcagcagcagcagcagccgcagtacagctccagcacgctagagaggaaa
gagtatgatagggggaccctgccgtacaaacccacctttccctgtgagtatcagtatgaa
agttcactgggaccctacgacttcggtctggtccagaacagatactag
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