Pseudoliparis swirei (Mariana hadal snailfish): 130190102
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Entry
130190102 CDS
T09868
Name
(RefSeq) RNA exonuclease 5-like isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130190102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pswi03009
]
130190102
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
Pre-60S particles
RNases
130190102
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RNase_T
RRM_5
Motif
Other DBs
NCBI-GeneID:
130190102
NCBI-ProteinID:
XP_056265273
LinkDB
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Position
24:complement(5067701..5074879)
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AA seq
795 aa
AA seq
DB search
MNSETTGFITSVEMSDDLSSASETCNGRKRKRGAPSPHREAGRSKAAEEGEEDEETPTRG
HSPSVSVLPDRLQQPITPSELTELLHYAALGQTGGVKQPSWCCLQHQKRVKAVNVVLVEG
LTQSHFYQHFLALRHLRTSYSTRVTFTPSATNLASGIFSGEVPEPDDPSLFQRPGGSGRL
PNALRIHPVIAQFGTERRGLTAYVLTQEEMIKKHFPVKGMLGFEDFLCTDAVDCVTDGSP
LYGLDCEMCLTGKGNELTRLSLVDSDGKCLLDDLVRPQNRIFNYLTKFSGITRKMLRPIT
MTLRDVRLKLVNLLPSDAVLVGHSLECDLVALKLIHRHVIDTALLYRKEFGQKFKLKVLA
ESVLQKLIQTEETTGHNPIEDAAAALELAQYFIRTGPRQVVELHLETLWGSTIEEEPSES
EFEPEPEPEPSLRFADILQTLGQSVAFLGKRSDLPLDLSNQEWHNSDKEVAASFRRQKKC
PFLSVLQFSSLSDHLRRCPPPPREHQRAILRDMCVVFAGPFPAGFSERKVRRLFCCCGPV
RNIKMLTTTVRVHAEVEFELLEGATLALEALNGLNMHGQSIKVQRPVHESMLDLDLTLGA
LMADGLNARRLYVKFSPGLAEGARRGLALANGHVADGSGAPQLTERAVRDAFGHFGPVER
VVLPATRGKRARHAYIQFERSAARRAALDASGRREDYLVCPSLTPAHLTSWDAGGGEERT
HAAHTGSQVKTRGAPTPAGRHTEKNMFWRARQFLGFRPGNGSHAEEVGPPPGEALQIPPR
RHLVRGRAARTRKCR
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgaattcagaaaccacaggatttataacatctgtcgagatgtctgatgatctttcatca
gcgtcagaaacgtgcaatgggaggaaaagaaagcgcggcgccccctcgccgcacagggag
gccgggagatcgaaagcagcggaggaaggcgaggaagacgaggagacgccgacgcgcgga
cactcgccgagtgtttctgtgctgcccgaccgccttcaacaacccattacacccagtgag
ctgacggagctgctgcactacgccgcgctgggccaaacgggtggcgtcaaacagcccagc
tggtgttgcctccagcatcagaagagggttaaagctgtgaacgtggtgctcgtggagggg
ctgacccagagtcacttctaccaacacttcctcgccctgcggcacctccgcaccagctac
tccaccagggtcacctttactccatcggccaccaacctggcgtcaggaatcttcagcggt
gaagttcctgaaccggatgatccgtctcttttccaaaggcccggtggaagcggtcgattg
cccaacgcgttgaggattcacccagtaatcgctcagttcgggaccgagaggagaggactg
acggcgtacgttctcacccaggaggagatgatcaagaaacacttccctgtcaagggaatg
ctgggctttgaggacttcctgtgcacggacgctgttgactgcgtgaccgacggcagcccg
ctgtacggactcgactgtgaaatgtgtcttacagggaagggaaacgagttgactcgcctc
tccctggtggacagcgacggcaagtgtttgctggacgacctggtgagacctcagaaccga
atattcaactacctcaccaagttctcggggataaccaggaagatgttgcgaccaatcacg
atgaccctgcgggacgttcgactgaagctcgttaacttgttgccgagcgatgcggttctg
gtgggacactcactggaatgcgaccttgtggctttgaaactgatccaccggcacgtcatc
gacaccgcgctgctgtaccggaaagaatttggacaaaagtttaaactgaaggtcctggca
gagagcgtgttgcagaagctgatacagactgaagagacgacgggtcataatcccattgag
gacgctgcagccgccctggagctggctcagtattttatcagaacgggacctcgtcaggtt
gtggagcttcatctggagacgctgtggggatccacgatagaggaggagccctctgaatct
gaatttgaacctgaaccagaaccagaaccaagcctcaggttcgcggacatactgcagact
ctgggccaatcggtggccttcttaggaaagcgctcggacctcccactggacctgtccaac
caggagtggcacaactcggacaaagaggtggcggcctccttcaggagacagaaaaagtgt
ccgttcctctcagtgctccagttttcttccctctcggaccatctgaggaggtgccccccc
cctccacgggagcaccagagggcgatccttcgggacatgtgcgtcgtgttcgccgggccg
ttccctgctggtttctccgagaggaaagtgaggcgtctgttttgctgctgcggaccggtt
cgcaatatcaaaatgttgaccacaaccgtcagggtccatgcagaggtggagtttgagctg
ctggagggagcgacgctggctctagaggcgttgaatggacttaatatgcacgggcagtcc
atcaaggtgcagaggcccgttcacgagtcgatgctggacctggatctgactctcggcgct
ttgatggccgacggtctcaacgcccgccgcctctacgtcaagttcagccccggtttggcg
gaaggcgcccgccgcggtttggcgctggccaacgggcacgtggcggacggcagcggcgcg
ccgcaactgaccgagcgggccgtcagagacgcgttcggtcactttggtccggtggagcga
gtcgtcctgcccgccacgcgggggaaacgcgcgagacacgcgtacatacagttcgagagg
tcggcggctcgacgcgcggccctcgacgcctcgggacggagggaagactacctcgtctgt
ccgtccctaactccggcgcacttgacctcgtgggatgccggcggcggcgaggagaggacc
cacgccgcgcacaccggctctcaggtgaagacgaggggcgcgccgactccggctggtcgt
cacaccgagaagaacatgttttggcgagcgcgccagtttctcggcttccgaccaggaaat
ggatctcatgctgaggaggttggaccgccgcctggggaagctcttcagattcctcccaga
aggcaccttgtccgtggtcgtgctgctcggacacgcaagtgccgatga
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