Pseudoliparis swirei (Mariana hadal snailfish): 130190166
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Entry
130190166 CDS
T09868
Symbol
frem3
Name
(RefSeq) FRAS1-related extracellular matrix protein 3
KO
K23383
FRAS1-related extracellular matrix protein 3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09190 Not Included in Pathway or Brite
09193 Unclassified: signaling and cellular processes
99992 Structural proteins
130190166 (frem3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
Motif
Other DBs
NCBI-GeneID:
130190166
NCBI-ProteinID:
XP_056265418
LinkDB
All DBs
Position
24:7833435..7862461
Genome browser
AA seq
3143 aa
AA seq
DB search
MAGCLQSSPLCQKWAVLRCLLVTFSLNFCFVSVDAEPFDQAHFYHHRSGPNEDNIILANN
GIRVPFGRSVLLDPVNDLVTEVQPGDRCHITVLDNDQLAQKPGMLTPKRFPCSFGPDDVK
YTHFGSRSPSKDRVKLQLRYDSQTDTVVIPLMLEVEVVFHQLEILTRNMPLNVEKLSGDS
NPIDKRALEFSFEDDVTQCKIATLVGAGGLPRYGTLLNNPSNGQMVDCDEFVKQGIRYKH
TAKTNSPNRDYIPMMVELQDNEGNTIMQEHFQIMVRIREGAENTAPKPSFVSMMMMEVDQ
FVMTAITNDMLAAEDVESDPDDLIFNITTPLSPQQGYIISTDDQNLPITSFYQRDINDIK
IAYKPPSEDSEVERIFQLEFEIVDTDGAVSDTFAFMIVVKPMNTLAPVATKNTGQLLFEG
QSRVLSSTQNLEISDEDNLEDVRITVVDGLKHGDLTVLGARSKFFTPSDLDAGFVVYQHD
GSDTYSDNIIFRMTDGSNNVEFLFPITIAPTDDEPPIINANTGLVLFKNEVMQISPFILS
ATDIDSEDSAIKFILEEPYSTVGELLLRQVEPPSDPSLWKFSETDEMFEQVVTECFQQDI
LDGKLFYRHVGPHSITTVIDQFVFRVQDDNDPPNQSGEHMFTIKIHPVDDLAPELFPGTT
LHMTVQEYELTHFKKNFLCYTDLDSDDRDLKYTIIEPPTDTDENNPAPLGEIVLTNRPDT
VIIEFTQAQVNHHKVAYKPPDQELGITPKVAQFTFIVEDTAGNTVDGLFTIFLQPVDNKP
PLITNTGFTVMERSTYIITRKELHATDTDTDDENIIFTVTQIPRYGLLQYLGIDMANGET
FFLEDIANSCLSYIHGGDESLSDVIKIDVSDGFHEVPIIIKVTVEPVDDETPRIMLPAGL
LGAAIDVLENGATEITSNVIQGHDEDTDDLILTFIVEKPPRLGEILVNGAPAERFTQEDI
INGAVVYAHTSGEIGPFKEYDSFNLTLSDLSEQWVVGGNRVQGVTVHVTILPVDSIPPSV
SVGNQFVGLEGEKNVITLDHIQTEDIDTDNDDILCTIIVQPKSGYVENISPAAGSEKSRA
GTAITAFSIKDVALGHIFYVQSIHKGVEPVEDRFTFRCSDGINFSERHFFPIVIIPANDE
KPEIFIREFLVMEGMSLIIDTPILNAADADIPGDELHFEIIKKPKHGTIVQQLSTGTIPV
ERFNLEQIQEASNIVYEHDDSETKEDSFEIRLSDGQHTVEKTILIMVIPVDDETPRMTIN
DGLDVEIGETKVISNWVLKATDFDSEDKELMYVVRYGPRQGYLQRISKFGNVLGNITFGM
NFTQDEIDKQLIQYAHTGQEGIRDLLKFDVTDGINPLIDRYFYINIGSIDMVFPDVINKG
VTLKEGGRVTLTTDLLSTTDINSADEFLSFSITRAPSRGHLESTDHPGVPISTFTQLQLA
GNKIYYIHTSDDEMKMDSFEFEVTDGYNPVFRTFRVSITDVDNKKPVLTISKLFVEEGEN
KLITPFELTAEDRDTPDNLLRFIVTQVPVHGQLLFNNSKSITAFSKQDLNENLISYNHDG
TETNEDSFSFTVTDGTHNDFYVFPDTVYETRRPQMMIIHIHTVDNGVPQIVVNKAAASLK
VLQTGHLGFVITSKALRSEDRDSSQKVLKYIVSGAPLHGFIINTALGNDSITTFSQADID
DMKICYVLLDGSNATSDIFYFTVEDTGGNKLKPQPFRLNWAWISLERESYLVDEDAKFLE
VTLKRRGYLGETSFVSIDTKDGTAEKDKDFRGKSQKQVQFNPGQTTATWKVKIFTDQEFE
TSETFQIQLSEPVMAVLEFPHTATVEIVDPGDESTVYILQAEFKIEEDVGELLVPVRRSG
DASQELMVVCFTQQATATGTIPSTVLSYSDYITRPEDHNSVLRFYKDEREKLCRIIIIDD
SLYEEEESFNVSLSMPMGGQLGANYPTAKITILADSDDEPSLYFGEPEYVVDESSGYVEV
KVWRTGTDLSKTATVTVRSRKSEPVSAEAGLDYVGISRNLDFAPGVTMQTFRVTILDDLG
QPELEGPENFDLVLRMPMKAVLGEPSRTTITINDTVTDVPKVQFKEGSYKVDESDGEVTA
IVYRSGDISVRSTVRCYTRQASAQVMMDYSERPNTDASIITFLPGESEKPCVVSLMDDSV
HEEDEDFRFVLGTPKSKSPYGASIGEQKEALVTITDGKDRPIIRFSEIKYSVREPQVKGD
LAVVKIPILRVGDTSKVSLVRVHTKDGSAISGEDYNPLSEDVEFKAGEKEHFVEIEILYD
GQREMREAFTVHMKPDDNMVAEIQMNKAIVYIEEMDSVADVTFPAVPQVVSLLMYDDTDK
VKDTPHPPNGYPVVCVTACNPKYHDFEKTGSICSAEKINDTLTQYRWLVSAPTGSDGVTS
PMREVDTNTFFTNTKSVTLDSIYFQTGSRIQCAARAFNANGDAGLELSSSIVVMSKEEGM
CQPRVQGTVGAEPFSAKIRYTGPDDPDFPNLIKLTINMPHMDGMLPVISTRPLSNFELTL
SPDGTRVGNHRCSNLLDFNEIQTGHGFITDATKNPEIIGETSPYQYSPLMRSANSLRFYR
NLNLEACLWEFTSYYDMSELLNDCGGSIGTDGQVLNLVQSYVTVRVPLFVSYVFHSPVAV
GGWQHFDLQSELKLTFVYDTAILWQDGIGSPPEAELQGAMYPTSMRINEEGRLVVNFKTE
ARFRGQFVMSHPGTSVSSMVMCADHPGLTFTLALVRTEPTYNQPMQQWSFVSDFAVRDYS
GTYTVKLTACVASPNGEFSIPPVCHPREPLTFDMDIRFQQVSDPVAAEFSLNTQMFLLSK
REMWLSDGSMGFGEGTDAAFSDGSMIYGRVMVDPVQNLGDSFSCSIEKVFLCTGADGYVP
KYNPTNKEYGCLADAPSLLYRFKILDKAQPETQASAFGDVAFKATLAQDTPGGLPLVRQP
GSDGFSLSSSPLFQMAAGREWFIHTIYTVRSRANANRNIGKRSVEYLQHSMSSAEHPETS
DLASHRHRRASPAFSDTGVAQDIGVENNRGTNIQHIALDRADRMVVSQRQPWSPNRDPLL
ERPLPESSGRELADTSTLPMLVGLAGLILLICLIATVVILLLRRKKSEKKAQFPPYTTSS
SSAYNGYSQGPRGMWSSSDNSEV
NT seq
9432 nt
NT seq
+upstream
nt +downstream
nt
atggctggttgtctgcaaagttccccactttgtcaaaagtgggcagttttgagatgcctg
ctcgtgacattttctctcaatttctgttttgtctcagtagacgcagagccgtttgaccaa
gctcacttttatcaccaccgatctggacctaatgaagacaacatcattctcgctaacaat
gggatcagggtgcctttcgggagatctgttcttcttgaccctgtgaatgacctggtaaca
gaagtgcagcctggtgaccgctgccatatcacagttttggacaatgaccaactggctcag
aaacccgggatgttgaccccgaaaaggtttccctgttcattcggaccagatgacgtgaaa
tatactcattttggatctcggagccccagcaaggatcgcgtgaagctgcagcttcgttat
gactcccagacggacaccgttgtcattcctttaatgctggaagtggaagtggttttccat
cagcttgagatcctcaccaggaacatgccccttaatgttgaaaagctcagtggtgacagc
aaccctattgacaaaagggctctggagttttcctttgaggacgatgttacacagtgtaag
attgccactctggtcggtgctggaggtcttcccaggtatggcactcttttgaataacccc
tcaaatggccaaatggttgactgtgatgagtttgtgaaacaaggcattcgctacaagcac
acagctaaaaccaactcaccaaacagagactatattcccatgatggtagagctgcaggac
aacgaaggcaacaccataatgcaagagcatttccaaataatggttagaatcagagagggt
gcagagaatactgctcctaaacccagctttgtatccatgatgatgatggaagttgatcag
tttgttatgacagcgattacaaatgacatgctggctgctgaagatgttgaatctgacccg
gatgatttaatctttaacattactaccccgctgagccctcaacagggctatatcatcagc
acagatgatcagaacctgcctatcacctctttctatcagagagacatcaacgatattaaa
atagcatataagccaccttcagaggactcagaagtagagaggattttccagctagagttt
gaaattgtggacactgatggtgctgtgtctgatacttttgcttttatgattgtggtgaag
cctatgaataccttggctcctgttgcaaccaaaaatacagggcagctattgtttgaaggg
cagtccagagttctctccagcactcagaatttagagattagtgacgaggacaacctggaa
gatgtgagaataactgttgttgacggcttaaagcatggagacctaaccgtgctcggagct
cgcagtaagttttttacaccttccgatctagacgccggctttgtggtgtaccagcatgat
ggcagcgatacctatagtgacaacattatttttagaatgactgatggcagtaataatgtg
gagtttttgttccctatcactattgctcccactgatgatgagccacctattataaacgcc
aacaccggtctggtgctatttaagaatgaagtcatgcagatttctccctttatcctgagt
gccacagatattgattcagaagactccgccattaagtttatcttggaggagccctactca
actgtaggggagctcctgctgaggcaagtggagcctccctctgacccgtctctctggaag
ttcagcgagacagatgagatgtttgagcaggtggtaactgaatgttttcagcaggatatt
ctggatggaaaactgttctaccgtcacgtcggtccccatagcattaccactgtgattgat
cagtttgtgttccgggtccaagatgacaatgacccccctaatcaatctggcgaacacatg
ttcaccatcaagatccatcctgttgatgaccttgccccagagctttttccgggcaccacc
cttcacatgacagtccaggaatacgagctaacacacttcaagaagaacttcctgtgttac
actgatttagattcagatgacagagacttgaagtacactatcattgagcccccaactgac
acagatgagaacaatccagcccccttaggtgaaattgtgctgactaacaggccggacact
gtaattatagagttcacacaggcccaggttaatcaccacaaagtagcatacaagcctcca
gaccaggagctgggcatcactccaaaagtggctcagttcaccttcattgtagaagatact
gctggtaacacagtagatggattattcaccatttttctacagccagtggacaacaaaccc
ccacttataaccaacacagggttcactgtgatggaaagaagtacatatatcatcactaga
aaagagctgcatgccacagacacagatacagatgatgaaaatatcatcttcaccgtgacc
cagattcctcggtacgggctgctgcagtatctggggatcgacatggcaaacggagaaaca
ttttttcttgaagacattgcaaatagttgcctaagttacatccacggtggagatgaatcc
ctcagtgatgtcataaagattgatgtcagtgacggttttcatgaggtacccatcatcatt
aaggtcaccgttgagccagttgatgacgaaacccccaggattatgctcccagccggtctg
ctcggggcagctatcgatgtactagagaacggtgccacagagattacaagtaatgtcatc
cagggccatgatgaagacacagatgacctgatccttactttcattgttgagaagcctccc
aggctgggtgaaatcctcgttaatggtgctcccgctgagagattcacccaggaagacatc
atcaatggggcagtggtgtatgcacacacatccggtgaaatcggaccattcaaagaatac
gactccttcaaccttactctgtctgatttgtcggagcagtgggttgttggtggcaacagg
gtccaaggagtgacagttcacgtcaccatccttcctgttgacagcattccacctagtgtc
agtgttggaaatcaatttgttggactggaaggggagaagaatgtcattaccctggatcac
atccaaactgaggatatcgacactgacaatgatgatatcctttgcaccatcatcgtccaa
ccaaaatctggttatgtggagaacatctctccagctgcaggctctgaaaaatccagggct
gggacagccatcactgcctttagcattaaagacgtagccctcggccatatcttctatgtc
cagagcatccataaaggagttgaacccgtggaagatcgtttcacattccgttgctcagac
ggtattaacttctctgaacgccatttcttccctatcgtcatcattccagccaatgacgag
aagccagagattttcatccgcgagtttttggtgatggagggcatgagtttgatcatcgac
acaccgattctgaacgcggctgatgctgacatccctggggatgagctgcactttgagatc
atcaaaaaacccaaacacggtacaatagtacagcagctcagcactggcaccatcccggtg
gaaagattcaacttggaacagatccaagaggcttccaacattgtctatgaacacgatgac
tcagagaccaaagaggacagctttgagatcagactctctgatggccaacataccgtggag
aaaaccattcttatcatggttattcctgttgatgatgagacaccaaggatgactataaat
gatggccttgatgttgagattggagagacaaaagtcatcagcaactgggttttgaaagcc
acagattttgactctgaagacaaagagctgatgtatgttgtgcgttacggcccacgtcaa
ggctaccttcagcgcatcagcaagttcgggaatgttttaggtaacatcaccttcgggatg
aacttcacacaggacgaaattgacaaacaactcatccagtatgcacacacaggccaggag
ggaatccgtgacctgctgaagtttgacgtcacagatggcatcaatccccttattgaccgt
tacttttacatcaacattggcagcattgacatggtatttccagatgttatcaacaaaggt
gtgactctgaaagaaggaggtagagtaactcttaccactgacctcctcagcactactgac
attaacagtgctgatgaattcctcagctttagtatcacaagagcacctagtagaggccac
ttagagagcactgaccacccaggtgttcccatttccaccttcacccaactgcagcttgct
ggcaacaagatctactacatccacacctctgatgatgagatgaaaatggacagctttgag
tttgaggtgacagatggttacaatcctgtcttccgtacgttcagagtgtccatcacggat
gtagataataagaaacctgtcttgacgataagtaaactgtttgtggaggagggagaaaac
aagctcatcacaccgtttgagttgacagctgaggatcgggacaccccagacaatctattg
cgattcatagtcacccaggtgccagtgcacgggcagctgcttttcaacaatagtaaatca
atcacagccttttccaagcaggacctaaacgagaaccttatcagctataaccacgatggt
actgagaccaatgaagacagcttctccttcactgtcacagatggcactcataatgatttt
tacgtctttcctgacacggtctatgagacacgtaggcctcagatgatgatcattcacatc
cacactgtggacaatggtgtgccccagattgtggttaacaaagctgctgcctcactgaag
gtcctccaaacaggccacctgggcttcgtgatcaccagcaaggcccttcgatcagaagac
cgggacagttcccagaaggtcctgaaatacattgtgtctggggctcctctgcatggcttc
atcataaacactgccctgggcaacgacagcatcacaactttctcgcaagctgatattgat
gacatgaagatctgttacgtgctgttggatgggagcaacgccacaagtgatatcttctac
ttcactgttgaagacaccggtggaaacaaactaaagcctcagccattccggcttaactgg
gcctggatctctctggaaagagaatcctatttagtggatgaggatgcaaaattccttgag
gtgacactcaaacgcagaggatacctgggagaaacctccttcgtcagtattgacacgaag
gatggaacagctgagaaggacaaagacttccgtggcaaatcccagaaacaggtccagttc
aaccccggtcagactacggcaacctggaaggtgaagatcttcacagatcaggagtttgag
acctcagagactttccagatacagctgtcagagccagttatggctgtgctggagtttcca
cacaccgcaacagtcgagattgtggatcctggagatgaatcaactgtctacattcttcaa
gcagagttcaagattgaggaggatgttggagagctgttagtgccggtgcggcgatcagga
gatgccagccaggaactcatggttgtttgtttcactcagcaagccacggccactggcacc
atacccagcactgtgctgtcctactcggactacatcacccgcccagaggaccacaacagt
gtactccgtttttacaaggatgagcgggagaaactctgtcgcatcatcatcatcgatgac
tcgctgtatgaggaggaagagagcttcaatgtcagcctcagtatgcccatgggcggccag
ttgggcgccaactacccaactgccaagatcaccatcttggctgacagcgatgatgagccc
tcgctgtattttggggaacccgagtacgtcgtggatgagagttcaggctacgttgaggtg
aaggtctggaggacggggaccgacctgtccaagacggctaccgtcaccgtccgctccagg
aagagcgagcccgtctctgcagaagctggactagactacgtcggcatcagtcgcaacctc
gacttcgctcccggagtgacaatgcagacattcagagtgaccatcctggatgatctgggt
cagccggagctggaggggcctgagaactttgacctcgtcctacggatgcccatgaaggct
gtgctgggagagccgagcaggaccaccataaccatcaatgatacggtcaccgacgtaccg
aaggttcagtttaaggaaggaagctacaaggtggatgagtctgacggggaggtcacagcc
atagtgtaccgcagtggagacatcagtgtcaggtccacggtgcgctgttacactcgccaa
gcctctgctcaggtcatgatggactacagtgaaagacccaacaccgacgcctccatcatc
actttcctaccaggtgaatcagagaagccgtgtgtggtcagcctgatggacgactccgtc
catgaagaggacgaggacttccgcttcgtcctgggaactcccaagagcaagtccccgtat
ggagcttcgattggggagcagaaggaggcgctggtcacaatcacggatgggaaagatagg
cccatcatccgattctctgagatcaagtacagtgtgcgtgaacctcaggtcaaaggtgac
ttggctgtagtgaaaattcccatcctgcgtgttggagacacctcaaaggtgtcattggtg
agagtgcacaccaaggacggctctgcaatctctggagaagactacaacccactgtcagaa
gatgttgagttcaaggcgggtgaaaaggaacactttgtggagattgagatcctgtatgac
ggtcagagagagatgagagaggccttcactgtgcacatgaaacctgacgacaacatggtg
gctgaaatacagatgaacaaggccattgtgtacattgaggagatggacagtgtggcggat
gttaccttccctgccgtgccccaagtggtttccctgctcatgtatgatgacacagataaa
gtcaaagacacgccccacccgcccaatggatacccggttgtgtgtgtgacggcttgcaac
cccaagtaccacgactttgagaaaaccggctcgatctgctctgcggagaaaatcaacgac
actctcactcagtatcgctggctggtcagcgcccccaccgggtcagacggagtgaccagc
cccatgagggaggtggacactaatactttcttcaccaacaccaagtccgtcactttggat
tctatctacttccaaaccggctcacggattcaatgtgcagcaagagcctttaatgccaat
ggggatgccggtctggagctgtccagctccattgttgtgatgagcaaggaggagggtatg
tgtcagcctcgtgtccaaggcactgttggagctgaacctttctctgctaagatccgctac
accggtcccgatgaccccgacttccccaacctcattaaactcactatcaacatgcctcac
atggatggcatgttaccggtgatctccacaagacctctgtccaactttgagctcaccctg
agtccagacggcacccgtgtgggcaaccaccggtgctccaacttgctggacttcaatgag
atccaaacagggcacggcttcatcaccgatgcaacgaagaaccctgaaatcatcggagag
acttcaccataccagtacagcccgctcatgcgctcagccaactctctgcgcttctacagg
aacctgaacctggaggcctgcctctgggagttcaccagctactacgacatgtcggagctg
ctgaatgactgcggaggctccatcggcaccgatggacaggtgctgaacctggtccagtcc
tacgtcaccgtgcgtgtccctctgttcgtgtcctacgtcttccactctccggtggctgtg
ggaggctggcagcactttgacctgcagtcagagctcaaactcacctttgtgtacgataca
gctattctgtggcaggacggcatcggcagcccacctgaggctgagctgcaaggagccatg
tacccaaccagtatgcgtataaatgaggagggacgtcttgtggttaacttcaagacagag
gctcgcttcaggggacagtttgttatgtctcatccaggaaccagcgtctcgtccatggtg
atgtgtgcggaccaccccgggctgacattcactctcgccctggtcaggactgagcccact
tacaaccagcccatgcagcagtggagttttgtctctgactttgccgtgcgagactactcc
gggacctacacagtgaagttgaccgcctgcgttgcatcgcccaatggggagttcagcatc
cctcctgtctgccacccaagagagccgcttaccttcgacatggacattcgcttccagcag
gtgagcgacccggttgcagctgagttcagcctcaacactcagatgttcctgctgtccaag
agggagatgtggttgtctgacggctccatgggctttggagaagggactgatgctgctttt
tcagacggctccatgatctacggccgtgtgatggtggacccagtccagaacctgggcgac
tccttctcctgcagcattgaaaaagtcttcctctgcaccggagcagacggctacgttccc
aagtacaaccccaccaacaaggagtatggctgcctggcagacgctccctctctgctttac
agattcaagatcctggacaaggcccagccagagactcaggcttcagcatttggtgatgta
gcttttaaggccacactggctcaagacacacccggaggtctgcctttggtcagacaaccg
ggatcagatggcttctcactctcctcatctccccttttccagatggctgccggtcgagaa
tggttcatccacacaatttacacagtccgctcccgagcaaatgccaaccgcaacattggc
aagcgcagtgtggagtacctgcaacacagcatgtcctctgctgagcatcctgagacctcg
gacctggccagccaccggcaccgccgcgcctccccggctttctctgacactggcgtggcc
caagacatcggtgttgaaaacaaccgaggcaccaacatccaacacatcgctctggaccga
gcagaccgcatggtggtcagccagcgccagccctggtccccgaaccgagaccccttactg
gagcgccccctgccggagagctctggcagagaactggctgacacgtccaccctgccgatg
ttagtgggcctcgcgggtctaatccttctcatctgcctcatagccaccgttgtcattctg
ttgctgcggcgcaaaaagagtgagaagaaggcccagttccctccttacaccacctcctct
tcttctgcctacaatggctacagccaaggcccaagaggcatgtggagcagctcagacaac
tctgaggtctag
DBGET
integrated database retrieval system
