Pseudoliparis swirei (Mariana hadal snailfish): 130190208
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Entry
130190208 CDS
T09868
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03030
DNA replication
pswi03410
Base excision repair
pswi03420
Nucleotide excision repair
pswi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130190208 (rfc1)
03410 Base excision repair
130190208 (rfc1)
03420 Nucleotide excision repair
130190208 (rfc1)
03430 Mismatch repair
130190208 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pswi03032
]
130190208 (rfc1)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130190208 (rfc1)
DNA replication proteins [BR:
pswi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130190208 (rfc1)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130190208 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
Rad17
AAA_16
AAA_5
RuvB_N
AAA_14
BRCT_2
AAA_17
nSTAND3
AAA_19
AAA_18
NTPase_1
AAA_33
Herpes_UL25
Motif
Other DBs
NCBI-GeneID:
130190208
NCBI-ProteinID:
XP_056265481
LinkDB
All DBs
Position
24:15770800..15788059
Genome browser
AA seq
1190 aa
AA seq
DB search
MDIRRFFPPTSDKCAVQKPAAPNGNVKTDKKKKKNPLSSDEEVKKKKKETAKVKSSKPEE
KRKDSEKKRKKYAVIESDSEDEEPAKKSNKSPKEKRTTGKMEPLPKKDPVQYVSETDSDS
DNFQTLKKVSKPKQNGSAKQAAKPGAGSARQGVKEGLRSPPKPSTAPGKAALKSPVTPKS
TSPPTHKQTPTSVLDYFGSAAVQRSDKKLVASIKRKAVSASSQPSPEVDDLSDEQIAKQL
QMDEDMMELEKQVHEDEEFARTLAMLDEEPQAKKARKGSDERPAAAFPKMSRTDSAAGTS
QTKRKGSTSEDVIDPTPKKDTATVKASSKLAMMKKKKEERDDGSKGKRPVSPTKMIISPK
KEALASSSSDKKVTPKAGSAAATVKTSPEKPESTSPEDSEKKKVNSAAYRNFLNRDGPRA
LGSKDIPQGGENCLEGCMFVLTGVMESIERDAAKSLIERYGGKVTGNVSKKTTYLVQGRD
SGVSKLEKAESLGTKILDEDGLLELIRTKPGKKSKYEITAEAESKASKTRTPPSRTSKST
PKAQKISPSKGNSWSPHTPSPSKTGLAQGHGARTRSGGTPPGRGSGPTARRELGLSSSSS
SSSAPRKSSPSAAGDDVSLLWVDKYRPRSLKAVIGQQGDQSCANKLLRWLQNWSKHHSGR
SSKPAAARFGKFGGGRDDGSTFKAALLSGPPGVGKTTTAALACEELGLSYVEMNASCTRS
KSCLKEVVAQSLTNTSIESFYKGTSQKVSSQHVLIMDEVDGMAGNEDRGGIQEMIGLIKY
SKIPIIFMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSLAFKEGIKIPPPALNEM
ILASNHDVRQVIHNLSMWSAKDKVMTYDQCKSDAASARKDMKLGPFDVCRKVFCFGEESA
HMSLIDKSDLFFHDYSLAPLFVQENYLHVRPKAAGGDLKAHLMLLSKTADAISDGDLVDR
QIRSRQNWSLLPTQAVYASVLPGELMKGYMSQFPTFPSWLGKFSSTNKHSRIIQELASHM
GLKTMCSRQAVNLDYLFYLRQALLSPLQRHGAEGAADAVQLLDNYQLIREDVDSMMEVSV
WGGQADPYSKLDPKVKAAFTRAYNRKVHLMPYSLQVVKKGRRGGGGGGGESELGGEDVDN
EAWESEEEGLKADAMIKQKKVKATKESKKEKKEDSGKGKGKGKGQGKGKK
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcgcttctttccaccgacgtcagacaagtgcgcggtgcagaaaccagca
gctccaaacggaaacgtcaagacagataagaagaagaagaagaatccgctctcttcggac
gaggaagtgaaaaagaaaaaaaaggagactgccaaggtgaaaagctccaaaccagaggag
aaacggaaggacagtgagaaaaaacggaagaagtatgcagtcatagaatctgactctgag
gatgaggagccagcgaagaagtcaaacaagtcccccaaagagaaacggaccacgggcaaa
atggagccgctgcccaaaaaagatcctgtgcagtacgtctctgaaacagactctgatagt
gataactttcagactttgaagaaggtctccaaacccaagcagaacggctcggccaaacag
gcggcaaaaccaggtgcaggcagcgctcgacaaggggtcaaagaggggctgaggtccccg
ccgaagccctccaccgccccggggaaagccgcgctgaagtctcccgtcaccccaaagtca
acttcgcctccaacacacaaacaaacccccacctcggtactcgactactttggcagtgcg
gccgttcagcgctcggataagaagctggtggccagcatcaaacgaaaggccgtgagtgct
tcttctcagccatctccggaagtagatgacttgagtgatgagcaaatcgccaaacagctg
cagatggatgaggacatgatggagctggaaaagcaggtccacgaggacgaggagtttgcc
agaactctggccatgctggatgaggagcctcaagcaaagaaggctcgtaaaggctctgat
gaaaggccagccgctgcgtttcccaaaatgagcaggaccgactccgcagccggcacgtca
cagaccaaaagaaagggcagcacgtcagaggatgtgattgacccgacccctaagaaggac
accgccacggtcaaagccagctccaaactggccatgatgaagaagaaaaaagaggagcga
gatgacgggtcaaagggcaaaaggcccgtttcacccacaaaaatgataatctctcccaaa
aaggaggccctcgcttcgtcaagctcagacaagaaggtcactcccaaagcgggaagtgca
gccgccacggttaaaacgtctcccgagaaaccagagagcacgagtcctgaggactcagag
aagaagaaggtcaactctgcagcttacaggaacttcctcaacagagatggaccacgagct
ctcggctccaaggacatcccacagggtggggagaactgtttggagggctgcatgttcgtg
ctgacgggggtcatggagtctattgagcgcgatgccgccaaatccctcatcgagcgctac
ggaggcaaggtgacgggcaacgtaagcaagaagaccacctacctggtgcagggcagagac
agcggagtctccaagctcgagaaggcggagagtttgggcaccaagatcctagacgaggat
ggtctgttggagctgatcaggaccaaaccaggaaagaagtccaagtacgaaatcacggca
gaggctgagagcaaagcctcaaagaccaggaccccgccgagcaggacatcaaagagcacc
ccaaaagcccagaagatctctccctctaaggggaattcttggtcccctcacaccccgagc
ccgtcaaagaccggcctggcacaaggccacggggccaggaccaggagtggaggcactcca
cctgggagaggctctggacccacagcccgccgggaactcggcctctcctcctcctcctcg
tcatcctcagccccacgaaagtcttccccgtcggcggcgggggacgatgtcagtctgctg
tgggtggacaagtaccgcccgcgctctctgaaggctgtgattggccaacagggagaccag
agctgtgccaataagctgctccgctggctgcagaactggagcaaacaccacagcgggcgc
tcatccaagccagcagctgcgaggttcgggaagtttggaggagggagagacgatggatcg
acattcaaagctgctctgctctctggacctccgggcgtggggaagaccaccacagcagct
ctcgcctgtgaggagttgggcttgagctacgtggagatgaacgcgagctgcactcgcagc
aaaagctgtctgaaggaagtggtcgctcagtcgctcaccaacaccagcatcgagagcttc
tacaaaggcacctctcagaaagtgagcagtcaacacgtcctgatcatggatgaggttgat
ggcatggccggcaacgaggaccgcggaggaatacaggagatgatcggcctgatcaaatat
tcaaagatacccatcatcttcatgtgcaacgatcgtaaccaccagaagatcaggtcgcta
gcaaactactgcttcgatctgcgcttccagaggccgcgagtggaacagatcaagggagct
atgatgtccctcgccttcaaagagggaataaagatcccgcccccagctcttaacgaaatg
atcctcgcctccaatcacgacgtccgacaggtgatccacaacctgagcatgtggtcggcc
aaagacaaggtgatgacgtacgaccagtgcaagtccgacgcagccagcgcccgcaaagac
atgaaactggggccgtttgacgtttgccggaaggtgttctgcttcggggaggagagcgcc
cacatgagcctcatcgacaagtcggacctcttcttccacgactactcgctggcgccgctc
tttgtccaagagaactacctgcatgttcggccgaaggctgccggtggggacctgaaggcc
cacctgatgctgctcagcaagacggctgacgccatctctgacggagacctggtggaccga
cagatccgctctcggcagaactggtcgttgctgcccacccaggccgtctatgccagtgtg
ttaccaggcgagctgatgaaaggctacatgagtcagttccccaccttccccagctggctc
ggcaagttctcctccaccaacaaacattcccgcatcatccaggagctcgcctcacacatg
ggcttgaagacgatgtgcagcaggcaggcggtgaacctggactacctgttctacctgcgg
caggcgctgctgagcccccttcagaggcacggagcggagggcgccgctgatgctgtgcag
ctgctggacaactaccagctgatcagggaagacgtggacagcatgatggaggtcagcgtc
tggggcggacaggcagacccctactccaaactggaccctaaggtgaaggcagcattcaca
cgggcctacaaccgaaaagtccacctgatgccgtactctctgcaagtggtgaagaagggc
cgccgggggggtggcggtggagggggggagtcagagttgggaggagaggacgtggacaac
gaggcgtgggaatccgaggaggagggcctcaaagccgacgccatgatcaaacagaagaag
gtcaaagcaaccaaggagtcaaagaaggaaaagaaggaagattctgggaaagggaaagga
aaggggaaaggacaaggcaaagggaagaaatga
DBGET
integrated database retrieval system
