Pseudoliparis swirei (Mariana hadal snailfish): 130190213
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Entry
130190213 CDS
T09868
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130190213 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130190213 (fip1l1b)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
130190213 (fip1l1b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
130190213
NCBI-ProteinID:
XP_056265489
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All DBs
Position
24:17294324..17304775
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AA seq
590 aa
AA seq
DB search
MSAEEADKQNTDASAGDEEEEWLYGDEPEGKEEDEEAKLNAAVSAPADALTEDAHATGNG
VASEATGEGEGDADGDGAAAGEDVESDSDSDDDDDDVRVTIGDIKTGAPQYTTYGAPPVN
LNIKTTGSRPYGHASKLKGVDLDAPGNINGVPVLEADVESFEEKPWRKPGADLSDYFNYG
FNEDTWKAYCEKQKRLRMGLEVSTIGSVTSKITVQQGRTGNDKDMSSLPIHTSKPDFTSP
LNMYNPPINQIPRISPPQWPPGPPPPDMSYYTKTSGTIDVIGGGTATISRVEGRRRHNLE
GNNIQVIAEQTDADPTPAKIPTFFPPGSLPPNIPPPPFLPPPPNVNAAPPLIPPPRLPIT
VPPPGFPPPPSGPPPTIIPSMDSGHPGGYDGRPVPPYPFPQGAYPPPMSGGVPPPWPPMM
DNSKPWDYYARRDDKREKERERPRERTHEREREREHSPSAISYTSDEERFRYREYQERGS
GGGGGGGSGGGGGGSGGGGSGGGGGGSGYVERHRERSSREKEERHRERRHREKEEGRHKS
SRSSSSRRRHDSEETDSHRRHKHKKSKRSKEGKEPSEEISADQENQEVME
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaagcggacaaacaaaacaccgatgctagcgctggagacgaggaggag
gaatggctgtacggagatgagcctgagggcaaagaggaggacgaggaagccaaactgaac
gctgcagtcagtgcacctgctgatgctttaacagaggatgcacacgctacagggaatgga
gtagcctctgaggcgacaggtgagggtgaaggtgatgccgacggtgacggtgcagcagcg
ggtgaggatgtggaaagtgacagcgacagtgacgacgacgacgacgatgtccgcgtcacc
attggcgacatcaaaacgggagcaccacagtacacaacttatggagctccacctgtcaat
ctcaacatcaagacaacaggctccagaccgtatggacatgcctccaagttgaagggagtg
gatctggacgctcctggtaacatcaacggggtcccagtgctggaggcggatgtggagtcc
tttgaagagaaaccctggagaaagccaggagcggatctgtcagactactttaactacggc
ttcaatgaagacacatggaaggcttattgtgaaaaacagaagagactgcgcatgggcctg
gaggtctctactatcggctcggtgacaagcaagatcactgttcagcaaggcaggacgggg
aacgacaaggacatgtccagtttgcccattcacacgtcgaagccagacttcacgtctcct
ctcaacatgtacaacccccctatcaatcagatccccaggatctctccccctcagtggccc
ccaggtccgcctcctccggacatgtcctattatacgaagacgagtggtactatagatgtg
atcggtggaggaacggccaccatcagcagggttgaagggcgccgcagacacaacctagaa
ggcaacaatatccaggtgatcgccgaacaaacggacgccgatccgactccagctaagatt
cccaccttcttccctcctggatcacttcctccaaacatccccccgcctccgttcctccca
ccgccacccaatgtcaacgctgcacccccgctcatcccaccacccaggttgcccattact
gttcctcctcctggtttcccccctccacctagcggcccccctcccaccattatcccctct
atggacagtggccaccccggaggttatgatggacgccctgtccccccctacccattccct
caaggcgcataccctcctcccatgtctggaggcgtgcctcccccctggccccccatgatg
gacaactctaaaccctgggactactatgcccgtcgagacgacaagcgagagaaggagagg
gagaggcccagagagaggacacatgagcgggagagagagagggagcacagcccttcagct
ataagctacacaagcgatgaggagcggtttcgataccgcgagtaccaggagcgtggcagt
ggtggtggtggtggtggtggtagcggcggtggcggcggcggtagtggcggtggcggcagt
ggtggcggcggcggcggcagcggctacgtggagcggcaccgtgagcggtcgagccgagag
aaggaggaaagacacagagagagaaggcaccgagagaaggaggagggacgccacaagtcc
tctcgcagcagcagcagcaggcggcggcacgacagcgaggagaccgacagccaccggagg
cacaaacacaagaagagcaagaggagcaaggagggaaaagagccgagcgaggaaatcagc
gcagaccaagagaaccaggaggtcatggagtag
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