Pseudoliparis swirei (Mariana hadal snailfish): 130190492
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Entry
130190492 CDS
T09868
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130190492 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130190492 (taf5)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130190492 (taf5)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130190492 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
130190492 (taf5)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130190492 (taf5)
STAGA complex
130190492 (taf5)
TFTC complex
130190492 (taf5)
SAGA complex
130190492 (taf5)
SLIK complex
130190492 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
TFIID_NTD2
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD_LRWD1
PEP5_VPS11_N
Beta-prop_VPS8
eIF2A
PROPPIN
LisH_TPL
VPS8_N
LisH_PAC1
Motif
Other DBs
NCBI-GeneID:
130190492
NCBI-ProteinID:
XP_056265904
LinkDB
All DBs
Position
24:complement(21304753..21313238)
Genome browser
AA seq
751 aa
AA seq
DB search
MAAVQGGLVDAVEEKDIKTEPSSDGTGNNNANDAGPPSASPGSSAPSAGSNKSAAGAPED
QQTLLAVLQFLRKNKLTESVDILRREAGLPEDSPDLKADDSSGAGSGAAAGSGDAEGGDA
SALLSRVTASSAAAAPPAPTKASGEDQPDVNVVLSAYSQQGDPKLYPVYYNGLKRFIESV
LDCHRAELSQVFYPLFVHMYLELVYNNFESEAKAFFDKYTGDQECYYEDDLRILSSLSKR
EHMRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRS
KSQIDAMSGSLAGEGKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKD
SMGSKNKKQDPHAPSQTRIPLPELKDSDKLDKIMYMKEATKRVRLGPDNLPSICFYSFLN
AYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIM
DEKTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPV
WDTHFSPHGYYFISGGHDRVARLWATDHYQPLRMFSGHLADITCTRFHPNSNYVATGSSD
RTIRLWDVLNGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGNGMMFGELK
GHTDSIYSLRFSRDGEILASGSMDNTVRLWDALKAFDDLETDDFTVATGHVHLQDNSQEL
LLGTYVSKSTPVIHLHFTRRNLLLAAGSYNP
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacaaggtggtctggtcgacgcggtcgaagaaaaagacataaaaacggaa
ccatcgagcgacggcacaggaaataataatgcaaacgacgcaggaccaccgtctgcgtcc
cccggctccagtgctccgtcggcggggagtaataaatccgcggcgggagccccggaggac
cagcagacgctgctggcagtactgcaattcctgagaaagaacaaactgaccgagtccgtg
gacattttgcgtcgtgaagcgggattaccggaggattctccagacctgaaggcggacgac
tcctccggggcgggttcaggtgctgctgcgggaagcggagacgcagaaggcggggatgcg
agcgctcttctcagccgggtgaccgcctcatccgccgccgctgcacctccggcgccaact
aaagcttctggggaggaccagccagatgtcaatgtggtgctgtcggcttacagccagcag
ggagacccaaagctgtacccggtttactacaacggcctgaagaggttcatagaatcggtg
ttggactgtcaccgagcggagctgtcccaagtcttctacccgctgtttgtgcacatgtac
ctggaactggtgtacaacaatttcgagagcgaggccaaggcgttcttcgataagtacacc
ggtgatcaggagtgttactacgaagatgacttgcggattttgtccagcttgtccaagagg
gagcacatgagaggcaacgagactctgctggacttccgcaccagcaagtttgtcctgcgt
atctcccgcgactcttaccagctgctgaagaggcacctgcaggagcgccagaacaaccag
atctggaatatcatacaggagcatctctacatcgacatcttcgatggcatgccgcgcagc
aagagccagattgacgccatgtccggcagcttggccggagagggcaaacgagaggccaat
aaggcgaaggtttactatggtctgctgaaggaaccagaaatcgagctgcctctcgatgat
gaggacgaggaggcagagaatgaggagggtaaacccaagaagaagaaacccaaaaaggac
agcatgggctccaagaacaagaagcaggatcctcatgcaccgtcacagactaggatccct
cttccagaactgaaggattcagacaagttggacaagatcatgtacatgaaggaggccacc
aagagggtccgcctgggaccagataacctgccctccatctgcttctactctttcctcaac
gcttaccagggtttgactgcagtggacttcacagacgactccagcctgatcgcaggaggc
tttgctgactccacagtccgggtgtggagtgtcacgccgaaaaagctccgcaaggtcaag
tctgcagcagacttgaatctgattgacaaagagtcggacgatgtgctggagaggatcatg
gatgagaagacggccagcgagtcaaagatcctctatggacacagtggcccagtgtatggc
atcagcttcagcccagacaggaactacctgctatcgagttctgaagacggcaccgtcagg
ctgtggagtctccaaacgtttacctgtctggtgggctacaaaggtcacaactacccggtg
tgggacacgcacttctccccacacgggtactatttcatctccgggggacatgacagagtt
gcccgtctctgggcaacggaccactaccagcctctgaggatgttttctggccacctcgct
gatatcacttgcacccgcttccaccccaactccaactacgtggccacgggttcttccgac
cgcaccatccgactctgggacgtcctgaatggaaactgcgtgcgcatcttcaccggtcac
aagggtcccatccatgcgctggccttctctcccaatgggaagttcttggcttcgggagcc
accgatggcagagttcttctgtgggacattggcaacgggatgatgtttggagagctcaaa
ggccacacggactccatctactccctccggttcagcagagatggagagatcctcgcctcc
ggctcgatggacaacacagtgcgtctgtgggacgctctgaaagcgtttgacgacttagag
acggatgatttcacagtggccacaggacacgtccatctacaggataactcccaggagctt
ctgctgggcacctacgtgtcaaaatccacacccgtcatacaccttcacttcacccgcagg
aacctgctgttggccgccggttcctacaatccatga
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integrated database retrieval system
