Pseudoliparis swirei (Mariana hadal snailfish): 130190513
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Entry
130190513 CDS
T09868
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130190513 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130190513 (exosc1)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130190513 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
130190513 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
Motif
Other DBs
NCBI-GeneID:
130190513
NCBI-ProteinID:
XP_056265937
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All DBs
Position
24:complement(22332013..22336169)
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AA seq
194 aa
AA seq
DB search
MSPMKLCVPGDKLCSADNCIPGPGVYLRHGYVYSSLAGYVLKKNEGEELPVISVVRETEA
QLLPDIGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVEMYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSGAGAKMVPINWCEMQCPRTHSKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtctcccatgaagctgtgtgttccaggtgacaagctatgcagtgcagacaactgcatt
ccgggcccgggagtgtatctgcggcacggctacgtctactcgtcactcgcaggctacgtg
ctgaagaagaacgagggcgaggagttgcctgtgatctcagtggtgcgggaaacagaagcg
caactactacccgatatcggggcaatagtcacctgtaaggtgaccagtatcaacccgagg
ttcgccaaggtccacatcctttatgtgggctccacgccgctgaaggaccgcttcagagga
acaatcaggaaagaagacgtgcgcgcgacggagaaagacaaggtagagatgtacaaaagc
ttcagacccggcgacatcgtcttggcgaaagttatttctctcggtgatgtgcagtccaac
tacctgttgacaacggcagagaatgaactcggggtggtggtggcccacagtggagcaggt
gccaagatggttcccatcaactggtgtgagatgcagtgtccacggacgcacagcaaagag
ttccgcaaagtggcgcgcgtgcagccggagtatctacaggcgtga
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