Pseudoliparis swirei (Mariana hadal snailfish): 130190521
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Entry
130190521 CDS
T09868
Symbol
lrba
Name
(RefSeq) LOW QUALITY PROTEIN: lipopolysaccharide-responsive and beige-like anchor protein
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130190521 (lrba)
Membrane trafficking [BR:
pswi04131
]
Endosome - Lysosome transport
Others
Others
130190521 (lrba)
Endosome - Golgi transport
130190521 (lrba)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
130190521 (lrba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
Neurobeachin
WD40
Laminin_G_3
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR75_1st
WDR55
WD40_MABP1-WDR62_2nd
WD40_WDHD1_1st
WD40_MABP1-WDR62_1st
EIF3I
SUKH_6
DUF1765
Motif
Other DBs
NCBI-GeneID:
130190521
NCBI-ProteinID:
XP_056265946
LinkDB
All DBs
Position
24:6926031..7107664
Genome browser
AA seq
2925 aa
AA seq
DB search
MASEETAGAAQPGDGKDETSGAVALTTGVPIRGIKMKFGVLAGLVEVGEVSNRDIVETVF
NLLVGGQFDLEMNFIIQESESIVCMVELLDKCEPTCQAEVWSIFTAILKKSVRNLQACTD
VGLIQLVLQRISTTDNMIADLLVDMLGVLASYSITVKELKLFFSKLQGENGQWPCHAVKL
LSVLKCMAHRHGPDSFFSFPGTNAAAIALPPIAKWPYQNGFTFHTWIRMDPLNNINVDKD
KPYLYCFRTNKGMGYSAHFVGGCLIVTSLKSKGKGFQHCVKYDFKPQKWYMVSLVHVYNR
WQHSEISCYVNGELASFGDIAWFVNTSDTFDKCFLGSSETADVNRVFCGQMGAVYLFGEA
LSAAQVLAIFQLGSGYQGTFKYKAESDLLFAVHHKLLLYDGKLSSSISFAYNPRATDAQL
CLESSPRDNASIFIHSPHALMLQDVKAVVTHSVQSGIHSIGGMQVLFPLFAQLDYCQPHS
HELDTSVCCTLLSFVMELLKNSVAMQEQVLACKGFLVIGYTLEKSSKVHVTRPVLDIVLA
FSRYLSNLKNGILLLKQLCDHILFNPAIWIHAPAKVQLTLYTYLATEFISTVNIYNTIRR
VGTVLQVMHTLKYYYWVVNPQDRSGFVPKGLDGPRPNQKEILSLRAFLLLFVKQLIMKDF
GVKEDELQSILNYLLTMHEDDNLMDVLQLLVALMSEHPESMVQAFDQRNGIRVVYKLLAS
KNEGIRVQTLKVLGYFLKYLPPKRKLEVMLSHGLFSLLTERLMLHSSQFTMTTYNVLFEI
LTEQICTQVIHKQHPDPESAVKILNPQILKIIAALLKTSPPTPESMEVRKVFLSDLIKLF
NNSRENRRSLLQCSVWQEWVLSLCFINPRNSEEQKITEMVYAIFRILLYHAIKYEWGGWR
VWVDTLSITHSKVTFEAHKENLSRMFRQYQRQETAGSLSALRTISGVSQSSETVDCVSEP
LAEETAPSTVIELRVDELSPKSPESASSSTVTSGPPEAAGGRGHESITMSNILASTEEEE
EEKSRSWFRSSENGSGGDGKETEATVTQKDDAEERSEETNEQEPVTEASNDDNTDVQTSV
SDQPETDETKATGEVGDSATTPDETPVTGDEKSEAIKGESSNSMTEDSLNEAGVELPVVS
EPEGKADQTSPEAAASLENSVLGGASVCNEDLVDVSTISDQILTSDADESQGGSSYASAG
EEVEVGQKEDDKHQYDENKEDDQEGREMKTDVEKDEKQEVGTQEEKQESLTPPAETTEQS
GPEPAKEKVQDEQSSSADQQPSDTTALSAGLEVAAASDSSSPSRPSETAATAPTDGTAAS
NPDTRKSADPVPKTKEMNIARLDVSNVAVDTERLEFKETFTTKASQSLPPPASVAAAGSS
GQHREGSSTSAPRSTMFRIPEFRWSHMHQRLLADLLFSIETEVHMWRSHSTKTILDFVNS
SENVVFVHNSIHLISQVVDNLIMACGGILPLLSAATSSSHDLENIEPSQGLVVGASITFL
QRIINLVDVLVFASSLNFTEIEAEKNMSSGGILRQCLRLVCAMAVRNCLECQQAQFRQSA
EASARSYTAMLSSGVGAATSAAAQSPVDAVTGGMSPVRDLDRLLQDMDINRLRAVVFRDI
EDSKQAQFLALAVVYFISVLMVSKYRDILEPHNDKKRPLRSQSTRSTDSGAISGGLEVEN
GVSLRRYDSGIGDDHTSTAASDADLSSSAVTHGPDAISEALSTLSSEVRPPLPADSKGKS
VKDILRSLVSAPADVMVDPSLLPPAFLGNLGDATRESSLLFRSFDRSVVVAPKKPGKAPS
ATAASESGVTPIALVSSGDSSQSTSADSAAAGGPVPASASLPSVPPLSPVTQNTAPNMSI
SERLENALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVML
LCSQEWQNSIQKNAGLAFIELVNEGRLLSHTMKDHLVRVANEAEFILSRQRAEDIHKHAE
FESNCAQYAAEKRDEEKMCDHLIRAAKYRDHMTATQLIQKIVNILTDKHGSWGSSSKSRL
REFWRLDYWEDDLRRRRRFIKNPSGSTHSEATLKAAAEHVAYISASEEDVLKGKQSIRSQ
ALGNQNSESETLLDGDDDTLSSLEEKDLENLTGPVNLSTSVQLVAPAMVVKGTLSITASE
LYFEVDEDEPGFRAIDPKILAYTEGLHGKWLFTEIRAIFSRRYLLQNTALEIFMANRTAV
IFNFPDAATVKKVVHSLPRVGVGTNFGLPQTRRISLATPKQLFKASNMTQRWQRREISNF
DYLIFLNTISGRTYNDLNQYPVFPWVITNYDSEEFDLTLPSNFRDLSKPIGALNPKRAAF
FSDRYGSWEDDQVPKFHYGTHYSTSSFTMMWLLRIEPFTTFFLNFQGGKFDHADRTFSSV
ARAWRNCQRDTSDVKELIPEFYYLPEMFVNANSYNLGVTEDSITVSDVELPPWAKSPEEF
VRINRLALESEFVSCQLHQWIDLIFGYKQQGPEATRALNVFYYLTYEGAVNLSSINDPVL
REAVESQIRSFGQTPCQLLIEPHPPRSSAMQVYLLLQTPMMFTEQMQQDVIMVLKFPSNS
PVTHIAANTQPGLASPAIITVTANRIFAVNKWHGLTGHQSSAVQDQQYQLPVEIDPLIAN
NVGGHRRQISDLLDQSIQISSQYFAITADNRFILLCGFWDKSFRIYSTDSGKLTQIVFGH
RDVVTCLARSESYIGGDCYVLSGSRDATLLLWYWNGKHNSIGETPGKFTTPRAILTGHDC
EVTSASVCAELGVVISGCKEGPCLIHSMNGDLLRTLEGPDRCVRPRLIQASTEGHCVIYY
DKGHFCHFSVNGKLLGHMEVEDSIKAMYLSRDGQYLLTGGDGGVVSVWRVHDLKQLFTYP
GCDAGIRSMTMSHDQRCIITGMASGSIVLFYNDFNRWHHEYQTRY
NT seq
8778 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgaggagacagcgggcgctgcgcagccaggtgatggaaaggacgagacatcg
ggcgccgtggcgctcaccaccggagtgccgatccgggggataaagatgaaattcggcgtg
cttgctggcctggtggaagttggggaagtttccaaccgagacatagtggagacggtgttc
aacctgctcgtcggtggccagtttgaccttgagatgaacttcatcatccaggagtccgag
agcattgtgtgcatggtggagctgttggacaagtgcgagcccacctgtcaggccgaggtc
tggagcatcttcaccgccatcctcaagaagagcgtccgcaacctgcaggcgtgcactgat
gtggggctcatccagctggtgctccagcgtatatccaccacggacaacatgatcgcagac
ctactggtggacatgttgggcgtcctcgccagctacagcatcacggtgaaggagctgaag
ctcttcttcagcaaactgcaaggggagaacggccagtggccgtgtcatgcagtgaagctt
ctgtctgttctgaagtgcatggctcacaggcatggccccgactcgttcttcagcttccct
gggacaaatgcagctgcaatagctctgcctcctatagctaaatggccgtaccagaatggg
tttacgttccacacatggatccgcatggatcctctcaacaacatcaacgtagacaaagac
aagccttacctgtactgttttcgcaccaataaaggcatgggctactctgcacactttgtg
ggtggatgtttgatagtgacctcattaaaatcgaaggggaaaggattccagcactgtgta
aagtacgacttcaaaccacagaagtggtacatggtgtctctggttcacgtctacaaccgc
tggcaacacagtgagattagctgctatgtgaacggggaactggcttcctttggagacatc
gcctggtttgtcaacaccagtgacacgtttgacaagtgtttcctgggatcctctgagaca
gccgatgtcaaccgcgtgttctgcggacagatgggagccgtgtacctgtttggagaggct
ctgagcgctgctcaggtcctggctatctttcagctgggatcgggttaccagggcacattc
aagtacaaagcagagagcgacctactgtttgcggtgcatcacaagctcttgctgtatgat
ggcaagctatcttcttctatttccttcgcttataacccccgagccacagatgcccagctc
tgccttgagtcctcccccagggacaacgcctccattttcatccactcaccccacgcactc
atgctccaggacgtgaaggctgtggtcactcactctgtccagagtggcatacactctatc
ggcggcatgcaggtcctcttccctctgtttgcacagctggattattgccagcctcacagc
cacgagctggacacctctgtctgctgcactttgctatcctttgtgatggagctcttgaag
aactcggtggctatgcaagagcaggtcctggcctgcaaaggtttcctcgtcattggctac
accctggagaagtcttccaaggtgcatgtgacgcggcctgtcctggacattgtgttggcc
ttttccagataccttagcaacttgaagaatggcatcttgctgctcaagcagctttgtgac
cacattttgttcaaccctgccatctggatccatgcccctgccaaggtgcaactgactctc
tacacttacctagcaacagagttcatcagcacggtgaacatctacaacaccattcgcagg
gtgggcactgtccttcaggtcatgcacacactgaaatactactactgggtcgtcaacccc
caggaccgcagcggattcgtgcccaaaggcctcgatggtccgaggccgaaccagaaggag
atcctttctttgcgagcctttctgttgttgtttgtcaagcagctcatcatgaaggatttt
ggagtgaaggaagacgagctccagagtatcctcaactacctccttaccatgcacgaggat
gataatctcatggatgtactgcaactgttggtggccctgatgtctgaacatcccgagtcc
atggtccaggccttcgaccagcgcaacgggattcgtgtggtttacaagcttctggcctca
aagaatgaaggaataagagtgcagacactcaaagttttgggctactttctgaaatacttg
ccaccaaagaggaaacttgaggtcatgctgagtcatggccttttctcactgctcaccgag
cgcctgatgctccactccagccagttcaccatgacaacctacaacgtgctcttcgagatt
cttacagagcagatctgcactcaagtgatccataaacagcatccggaccccgaatccgct
gtgaagattctcaacccacaaattctgaagattatagccgcgctgctgaagacctctccc
ccaacccccgagagcatggaggtgcgcaaggtctttctgtcagacctgatcaaactgttc
aataacagccgagagaaccgcaggagtctgctgcagtgctctgtgtggcaggagtgggtg
ctctctctgtgcttcatcaacccgcggaacagtgaggagcagaaaatcacagagatggtg
tacgccatcttccgcatcctgctgtaccacgccatcaaatacgagtggggcggctggcgc
gtctgggtggacaccctgtccatcacccactccaaggtcacctttgaggcgcacaaagag
aatctgtcccgcatgtttcgccagtaccagcgtcaagagacggcaggctctctgagcgca
ctccgaaccatctccggcgtcagccaaagctcagagaccgtggactgtgtcagcgagcca
ctcgcagaggagacggccccttccactgtcattgagctcagggtggacgagctctccccg
aagtcaccggagtctgcatcgagttccaccgtcacttccggcccaccggaggctgccggt
ggaaggggccacgaatccatcaccatgtccaacatcctggccagcacggaagaagaagaa
gaagagaagagcagaagttggttcaggagttccgagaacggctcgggtggtgatggaaaa
gagaccgaagctactgtgacacaaaaagacgatgcagaggagcggagtgaagagaccaac
gagcaggaaccagtgacggaggcttcgaatgacgacaacactgatgtacaaacatcagtt
agcgaccagcctgaaacggacgaaactaaagcaacgggagaggttggagactctgcgacg
acacctgatgaaacgcccgtaacaggtgatgaaaaatctgaagctatcaaaggtgaatca
tcaaactccatgacggaagactctttgaatgaagcgggtgtggaacttcccgtggtttca
gaaccagaaggtaaggcggaccaaacgtcccctgaggctgcggccagtctggagaacagc
gtgctgggtggagcctccgtctgcaacgaggacctggttgacgtgtccaccatcagtgac
cagatcctcaccagtgatgctgatgaaagccaaggggggtcttcttatgcttcagccgga
gaggaagtggaggtaggacaaaaggaggatgataaacaccaatatgatgaaaacaaggaa
gatgatcaggaaggtcgtgagatgaagactgacgtggaaaaagatgagaagcaggaggtt
ggaacacaggaagagaaacaagagagtctgactcctccagctgaaacaactgaacaaagt
gggccagaaccagccaaagagaaagttcaagatgaacagtcttcctctgccgaccagcag
ccctccgataccacagcgctctctgcaggcctggaggttgcagcagcatcagactccagc
tcaccaagccggccttcagagaccgccgccacggcgcccacggacggcaccgccgcctcc
aaccctgacacccggaagagtgcagaccctgtccccaagaccaaagagatgaacatcgcc
agactagatgtgtccaatgtggccgtagacacagagagacttgaattcaaggagaccttc
acaacaaaagcgagccaaagcctgccgccgccggcttcggtagcagctgccgggtcttca
ggtcagcacagagagggcagcagcacttcggcccctcgttccaccatgtttcgtatcccg
gagtttcgctggtcccacatgcaccaacgcctcctcgctgacctgctcttctctattgag
acggaggtccatatgtggaggagtcactccacaaagacaattctggactttgtgaacagc
agtgagaacgttgtgtttgtccacaacagcattcacctcatctcccaggtggtggacaac
ctcatcatggcttgtggaggcattttgcctctgctctctgctgccacctcttcctctcat
gatctggagaacattgagccctcccaaggcttggtggtgggggcgtcgatcaccttcttg
cagcgcatcatcaacctggtggacgttctggtcttcgccagctccctcaacttcaccgag
atagaagctgagaagaacatgtcgtcaggaggcatcctcagacagtgccttcgcctcgtg
tgtgctatggcagtgagaaactgcctggagtgtcagcaagcccaattcaggcagagcgca
gaggcctcggcacgcagctacacagccatgctcagctctggggtcggagctgccacgtct
gcagccgcgcagagtcctgttgatgcagtgaccggtgggatgtctccagtcagagacctg
gaccggcttctacaggacatggacatcaaccgcctcagggctgtcgtcttcagagatatc
gaggacagtaagcaggctcaatttctggcgcttgctgttgtctacttcatctcagtcctc
atggtgtcgaagtaccgcgacatcctggagccccacaatgacaagaaacgccctctgcga
tcccagtccaccaggagcacagatagcggtgccatttctggtggactagaagtggagaac
ggtgtctctctccggcggtacgactccggcatcggcgacgaccacacctcgaccgccgca
agcgatgccgacctgtcgtcctctgccgtgactcacggtccagacgccatctccgaggcc
ctgtccaccctgtcctccgaggtcagacctccgctgcccgccgactcaaagggcaagagt
gtgaaggacattctgcgcagcctcgtgagcgctccagccgatgtcatggtggatccaagt
ctgctgcctccggcgtttctaggaaacctcggcgacgcgacgagagaatcatcgctactg
ttccgctcctttgataggagtgtcgtcgtcgcgcccaagaaaccgggcaaggcaccatca
gccaccgctgcatccgagtctggtgtgacacccatcgccttagtatcgtctggtgactcg
tcacagagcacctctgctgactctgcagctgcaggcggcccggttccagccagcgctagc
ctgccatctgtccccccactctcccctgtgacccagaacacagcccccaatatgagcatc
tccgaacgtctggagaacgctctggagaaggcggctccgctgctgagagagatcttcgtg
gactttgctccctttctctctcggacgttgctgggcagccacggacaagagctcctcatc
gagggcacgagcctggtgtgcatgaagtccagcagctcggtggtggagctcgtcatgctc
ctgtgttcacaggaatggcagaactccatccagaagaacgccggtctcgccttcatcgag
ttggtcaacgaaggcaggctgctgagccacaccatgaaggaccacctggttcgtgtggct
aatgaagctgaatttatcctgagccggcagcgagccgaagacatccataaacatgcagag
tttgagtccaactgcgctcagtacgcagcggagaagcgcgacgaggagaagatgtgcgac
cacctgatccgagcggccaagtaccgcgaccacatgaccgccacgcagctgatccagaag
atagtgaacatcctgaccgacaaacatggatcctggggaagctcgtccaaaagccggctg
agggagttctggcgcctggactactgggaggacgatttaaggcggcgacgtcgcttcatc
aagaacccctccggatccactcactcagaggctacgctcaaagccgcggccgaacacgtg
gcttatatcagtgcctccgaggaggatgttctcaaaggcaagcagtccatcaggagccag
gctctgggaaatcaaaactccgagagcgagacgttgcttgacggagacgatgacactctg
tcatccttagaggagaaggacttggagaacttaacaggcccagtaaacttgagcaccagc
gtccagctggtggctccggccatggtggtgaaaggcaccctgtccatcaccgcctccgag
ctctacttcgaggtggacgaggacgagccgggcttcagggccatcgatccgaagatttta
gcgtacacagaaggtcttcacgggaagtggctgttcacagagatccgtgccatcttttcc
agacgctaccttctgcagaatactgctctggagatcttcatggccaacagaacggcagtc
atattcaacttcccagatgcagccacagtgaagaaggtggtccacagtcttcctcgtgtt
ggagtggggacgaactttggccttccacagaccagacgcatatccctggctacgccaaag
cagctattcaaggcgtccaacatgacccagcgctggcagcgccgcgagatatccaacttc
gattacctcatctttctcaacaccatctctggtcggacctataatgacctgaaccagtac
ccggtcttcccctgggttatcaccaactacgactctgaggaatttgacctcactctgccc
agcaacttcagagatctgtccaagcccattggagctctgaaccccaagagggcagcattc
ttttcagaccgttatgggtcctgggaggacgatcaggtgccgaagttccactatggaacc
cactactccacctccagcttcaccatgatgtggctgctgcgtatcgaacccttcaccaca
ttttttctgaacttccaaggagggaagtttgaccacgctgaccgcaccttctcctcggta
gcccgcgcctggaggaactgccagagagacacatctgatgttaaggagctgatcccagag
ttctactacctccccgagatgttcgtcaacgccaacagttacaacctgggagtgacggag
gacagcatcacggtctctgatgtggagctgcctccgtgggccaagagtccggaggagttc
gtacgcatcaaccgcctggcactggagagcgaatttgtgtcctgccagctccaccagtgg
atcgatctgatctttggctacaagcagcagggacctgaagccaccagagccctcaatgtt
ttctattatctgacctatgaaggtgcagtcaacctcagctcaatcaacgaccccgtgctc
agagaggctgtggagtctcaaattaggagttttggacagaccccctgccagttgctcatc
gaaccacacccacccagaagctcagccatgcaagtgtatcttctcctgcagaccccgatg
atgtttacggagcagatgcagcaggatgttatcatggtgctgaagttcccgtcaaactct
cccgtgacccacatcgcggccaacactcagccgggcctagcgtcacctgcgatcatcacc
gtcaccgccaaccgcatcttcgccgtcaacaagtggcacggcctgactggtcatcagagc
tcagcggtgcaggaccagcagtaccaacttcctgtggaaattgaccctctgatagccaat
aacgtgggcggtcatcgtcgtcagatctcagacctgctcgatcaaagcattcagatcagc
tcgcagtacttcgccatcacagccgacaaccgcttcatccttctgtgcggcttttgggac
aagagcttccggatttactcgactgactcaggcaaactgactcagatagtgttcgggcat
cgtgacgtggtgacgtgtctggctcgctccgagtcctacatcggaggagactgctacgtg
ctgtcgggctccagagatgccaccctgctgctgtggtactggaatggaaagcacaacagc
attggagagactccaggcaagttcacgacaccgcgggccatcctgacgggccacgactgt
gaagtgaccagcgccagtgtgtgtgcagagctgggcgtcgtcatcagcggctgcaaagag
ggtccgtgtctgatccattccatgaatggggacctgctgcggaccctggagggcccggac
cgctgcgtacggcctcgcctcatccaggcctccaccgagggccactgcgtgatctactac
gacaagggccacttctgtcacttcagtgtcaacggcaagctgctgggccacatggaggtg
gaggacagcatcaaggccatgtacctgagtagagacggccagtacctgctgacaggcggc
gatggaggagtcgtgtccgtctggcgggtccacgacctcaagcagctgttcacctacccg
ggctgcgacgcaggcatccgctctatgaccatgtcacatgaccaaaggtgcatcatcacc
ggcatggcgtctggaagcatcgtgctcttctacaacgacttcaacagatggcaccacgag
taccagacccggtactga
DBGET
integrated database retrieval system
