Pseudoliparis swirei (Mariana hadal snailfish): 130190541
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Entry
130190541 CDS
T09868
Symbol
ift56
Name
(RefSeq) intraflagellar transport protein 56
KO
K19685
intraflagellar transport protein 56
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pswi03037
]
130190541 (ift56)
Cilium and associated proteins [BR:
pswi03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
130190541 (ift56)
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Gene cluster
GFIT
Motif
Pfam:
ANAPC3
TPR_2
TPR_16
TPR_19
TPR_8
TPR_1
TPR_9
TPR_Slam
TPR_6
Coatomer_E
TPR_7
SRP_TPR_like
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
130190541
NCBI-ProteinID:
XP_056265973
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All DBs
Position
24:19936558..19946946
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AA seq
557 aa
AA seq
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MILSRVKPAVGGETPVSISEKKKKNQTKVPALEDYLQKRDYLGAFTLLEFQRNIGEKEEH
ADLWIGYCAFHLGDYKRAMEEYESLTMKPECPAEVWVFLACTLFLLGLYQEAEEAASKAP
MSPLQNRLLFHLAHKFNDEKKLMGSHQNLEDVTEDQLSLASIHYMRSHYQEAIDIYKRLL
LQNRDFLALKVYVALCYYKLDYYDVSQEVLAVYLQSMPDSTIALNLKACNHFRLYNGKAA
EAELKNLIDISSCSFEFAQELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYNLRQ
DDVLEAYNLIQDLVPTTPQEYILKGVVNAALGQGIGSRDHLKIAQQFFQLVGGSASECDT
IPGRQCMASCFFLLRKFEDVLIYLNSVKGYFYNDDTFNFNYAQAKAALGNYKEAEEVFLL
IQNEKIKNDYVYLSWLARCYIMNQRGRLAWELYLKMGTSSESFSLLQLIANDCYKMGQFY
YAAKAFDALEKLDPESNYWEGKRGACVGIFQLILANKESKETLKEVLSLLRNSGNPQVEY
IIRALRKWAKDNRVLLS
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgattctctctcgcgtgaagccagccgttgggggagagacaccagtgagcatcagtgag
aaaaagaagaaaaaccagacgaaggttcccgccttggaggactacctgcaaaagagagac
tacctgggcgctttcacgctgttagagttccagagaaatattggcgagaaagaggagcat
gccgacctctggattggctactgtgcctttcacttgggtgattacaagagagctatggag
gagtacgaatctctgaccatgaagcctgaatgccctgcagaggtgtgggtgtttctggcc
tgcacactgtttttactggggctctatcaagaggctgaggaggctgcatctaaggcgccg
atgtccccgctccaaaacagactactcttccacctggctcataagttcaacgatgagaag
aagctgatgggttcccaccagaacctggaggatgtgacagaggaccagctgagcctggca
tccatccactacatgcgttcccactaccaggaggccatcgacatctataaacgtctccta
ctgcagaacagagatttcctcgctctgaaggtctacgtggctctgtgttactacaagctg
gactactacgacgtgtcccaggaggtgttggctgtgtacctgcagagcatgccggactcc
acgatcgccctcaatctcaaggcctgcaaccacttccggctctacaatggcaaggccgct
gaggctgagttaaagaacctaatcgacatctcctcctgctcatttgagtttgctcaggag
cttatccgacacaacctggtggtgtttcgtggtggtgagggggcgttgcaggtgctgcct
cctctggtcgatgtgatccccgaggccagactcaacctggttatctacaacctccgacaa
gatgatgtcctggaagcttacaacctcattcaggacttggtccccacaaccccccaggag
tatattttgaaaggagtggtgaatgcagcgttgggacaagggattggatcaagggatcac
ctgaaaatcgcccagcagttctttcagttggtcggaggctcggccagcgaatgcgacact
attcctggcagacaatgcatggcctcctgcttcttcctcttgagaaagtttgaagacgtt
ctcatatatctcaactcagtcaagggttacttctataatgatgatacattcaacttcaac
tatgctcaggctaaagcagcccttggcaactacaaagaagcagaagaggtctttctgctg
attcagaatgaaaagatcaagaacgactatgtttacctcagctggctggcacgatgctac
ataatgaaccagagagggcggctagcctgggagctctatctgaagatgggcacttcctcc
gagtccttcagtctgctgcagctcatcgccaacgactgctacaagatgggtcagttctac
tatgcagctaaagcgtttgatgcactggagaaactggacccagaatccaactactgggag
ggcaagcgaggggcttgcgtcggcatcttccagctcatactggcaaacaaggagtccaag
gagacactgaaagaggtgttatctctgctacgaaattcaggaaacccccaggttgaatac
atcattcgagctctgaggaagtgggccaaagacaacagagtcctcctctcgtga
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