Pseudoliparis swirei (Mariana hadal snailfish): 130190729
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Entry
130190729 CDS
T09868
Symbol
pcdh7a
Name
(RefSeq) protocadherin-7
KO
K16498
protocadherin delta 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
130190729 (pcdh7a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pswi01009
]
130190729 (pcdh7a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130190729 (pcdh7a)
Protein phosphatases and associated proteins [BR:
pswi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130190729 (pcdh7a)
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Protocadherins
130190729 (pcdh7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
130190729
NCBI-ProteinID:
XP_056266265
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All DBs
Position
24:complement(16413797..16456902)
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AA seq
1377 aa
AA seq
DB search
MQRLGAVHSSAAQALSLVVLALQLLTQLPGADSALRYRVAEEGPPDIKIGNVAADLGLMA
GTGSGDVTFALESGSEFFKIDNVTGELTTGTRRIDREKLAQCQMIFDENECFLDFEVSVI
GPLQSWVDLFEGRVVIIDINDNTPAFPSPVLQLSVEENRPIGTLYLLPTATDRDFGRNGI
DRYELIQDGGAGSSSSRRATAGNPIGRVEGIGDRRGRSGDSGGGPRSTVFELQVADIPDG
EKQPQLIVKGTLDREQKDSYELVLRVRDGGNPPRSSQALLRVSITDVNDNSPQFERSTYE
AEMEENAPPGTPVLQVRASDRDIGVNGQVEYVFGAATESVRRLLRLDEATGWLSVLHRID
REDVAQLRFTVTARDRGQPPRTDRTTVMLAVRDENDNVPIVEIRKIGRIPVRDGVALVPE
NVLVDTPVALVQVSDRDQGENGAVTCTVVGDVPFTLKPAGETALPPLPADEAFERNKKKY
FLHTSALLDYEATKEYSVTIVAVDSGSPSLSSNSSLMVRVVDINDHAPAFAQSVVEVHFA
ENNSPGERVVTVVASDADSGKNAEIVYSLEPAGNGPFYIDADNGDIRATGVLDRELRERY
ELRVIAKDKGTPSLRGSATVVVQVTDRNDNAPKFVQEIFTFYVKENLLANSPVGMVTVTD
ADEGENAEISLFIEMDGVDEKKAGEKVDGEDGEKEKEEVFSIENNTGTIFSSASFDREKL
SSYTFRVRAVDGGEPRKTATATVSLFVTDENDNAPSITSPANESYTLLPPASSARTIVRT
VTAIDPDTGPNADLCYSLVGGNPFRLFEIGHTNGVITLAEPLERRHRGLHRLVIRVNDSG
APSLCVTTMVHVFINESLANATVVDAQVARSLMAPLSLDIAGDPDSERALGKQRLSVAIG
ILAGAAAVILVILLVVTARQCGAQGKNGYEAGKKEPEEDFFSPPGAQPPAGRGRGSDRGR
KPRRDKRNGSGGGGGTVPGGGKADRSLYSGIVTVNGLRRHADDDDDDEDLSSASERLAAR
YCAMDGDPGSPRMGGGMRHQSSPDLARHYKSSSPLPAVNLQPHSPPAEGKKHQAVQDLPP
SNTFVGSGGCAGSGGSSSSSSGGSGNADAMSLGSDQCSDYGCQTGNKYSKQGTLRRVTFS
VVSQPQDAGCYDSGPEDSETPSSKSSSGPRLGALPLPEEGYERTTPEGSVGEEEHVENDA
RQLPDVALTGKCTRECDEFGHSDTCWMPVSHSPRQRHGSDPPRLSTFAPGDDNNNLRGND
HESDSESAGSAGSSEPGVVVVVGGDGQRFPLANGDPLGTLGGGDRNRNMGDHNRNLLNRK
MTSASYDTFSSAGFGRRQQDEEGGEGQNPAEVIPLTRTGGDYKTTSCLTLSRREVYL
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggcttggcgcagtgcactcctccgcggcgcaggctctcagcctcgtggtccta
gcgctgcagctgctgactcagctgccgggcgcagactcagccctccggtaccgggtggcg
gaggagggcccgcccgacatcaagatcggcaacgtggccgccgacctgggcctcatggcg
ggcacgggcagcggggacgtcaccttcgccctggagagcggctcagagtttttcaagatc
gacaacgtgacgggtgagctgaccacgggcacgcggcgcatcgaccgggagaagctggcg
cagtgccagatgatatttgacgagaatgagtgcttcttggacttcgaggtgtcagtgatt
ggccctctgcagagttgggtggacctgttcgagggccgcgtggtcataatcgacatcaac
gacaacacgcctgccttcccctcacctgtgctgcagctctcggtggaggagaatcgcccg
ataggaaccctctacctgctgcccacagcgacagacagggattttgggcgcaacggcatc
gaccgctacgagctgatccaagacggcggggcaggttcaagttcgtccagacgtgcaacc
gccgggaaccccatcggaagagtggagggcatcggggaccggaggggtagaagtggcgat
agcggaggaggaccccggagcactgtgttcgaactgcaagttgcagatataccagatggc
gaaaagcaaccgcagctcatcgtaaaaggcacattggatcgcgagcaaaaggactcctac
gagctagtcctcagggttcgagatggggggaacccaccgcgttcctcccaagccctgctt
cgggtatccatcaccgatgtgaacgacaacagccctcagtttgagaggtccacatatgag
gcggaaatggaagaaaatgcccctccaggtacacccgtcctccaggtcagagcttccgac
cgtgacattggggtcaacgggcaggtggagtatgtctttggagcggcaaccgagtccgtc
cggcgactgctgcgcctggacgaggccaccgggtggctgagcgtcctccacaggatcgac
agggaagacgtggcgcagctgaggttcacggtgacggccagagaccggggtcagccgccc
cgcaccgaccgcaccaccgtgatgttggccgtccgggacgaaaacgacaacgtgcccatc
gtggagatccgaaagatcggacggatcccagtccgagacggcgtcgccctggtgccggag
aacgtcctggtggacacgcccgtggctctggttcaggtgtcggaccgagaccagggggag
aatggggccgtgacgtgcacggtcgtgggagacgtcccattcacgctgaagccagctggt
gaaacggcgctcccgcccctacctgctgacgaagcctttgaaaggaataagaaaaaatac
tttttacatacttccgccttgctggactacgaggccaccaaggagtacagcgtcaccatt
gtggctgtagattctggcagccccagcctgtccagcaacagctcactgatggtgcgagtg
gtggatatcaatgaccatgccccggcctttgcccagagcgtcgtggaggtccacttcgct
gagaacaactctcctggtgaaagagtagtcactgtagtcgcctcagacgcagacagcggc
aagaatgcggagatcgtgtactccctggaacctgctggaaacgggccattttacatcgat
gcagataacggagatatccgtgccactggggttctggaccgcgagctgcgagagaggtac
gaactacgggtgattgccaaggacaagggcacaccttccctgcgaggttcagccacggtt
gtcgttcaggtgaccgaccgcaacgacaacgcgccaaagtttgtccaggaaatcttcaca
ttctacgtgaaagagaacctgctcgccaacagtccggtcggcatggtcactgtgaccgac
gccgacgaaggcgagaacgcggaaatcagtttgtttatcgagatggatggagtcgatgag
aagaaggcgggggagaaggtggacggcgaggacggtgagaaggagaaagaagaggtgttc
tccatcgagaacaacacaggaactatcttctcttcggcgtcgtttgaccgggaaaagctt
tcctcctacaccttccgtgtccgtgccgtggacggaggggagccgcgcaaaaccgccacc
gccacggtctcgctcttcgtgacggacgagaacgacaacgccccttcaatcacgtcccca
gccaatgagtcctacaccctccttccacccgccagcagtgcccgcaccatcgtcaggacc
gtgaccgccatagatccggacactggccccaatgctgacctttgctactccctcgtgggg
ggaaatcccttccgattgtttgagatcggccacaccaatggggtgatcaccctggctgaa
cccctggagcggcgccacaggggccttcatcgcctggtgatccgggtcaatgacagcggg
gctccctccctctgtgtcaccaccatggttcatgtcttcatcaacgagagcttggccaac
gccaccgtagtggatgcacaggtggcccgaagtctcatggctccactgtccctggacatc
gcaggggacccggacagcgagcgggcgttagggaaacagcgcctcagcgtggccatcggc
atcctggcgggagccgcggcggttatcctggtgatcctgcttgtggtcacggctcggcag
tgcggcgcccagggcaagaatggctacgaggccggcaagaaggagccagaggaggacttc
ttcagtcctccgggcgctcaaccgccggccggccgcggcaggggctcggaccgcgggcgc
aaaccccgacgtgacaagcgcaatggaagcggcggcggcggcggcacggtgccgggagga
ggcaaggcggaccgatccctctacagcggcatcgtgactgtcaacggactgcgtcggcac
gccgacgacgacgacgacgacgaggatctgagcagcgccagcgagcgcctggcggcccgg
tactgcgccatggacggcgaccccggcagcccgcggatgggcggcggcatgaggcaccag
tcgagcccggacctggccaggcactacaaatccagctcacctctccccgcggtcaacctg
cagccccactcccccccggccgagggcaagaagcaccaggctgtccaggacctgccgccc
tccaacacctttgtgggcagcggcggctgcgcggggagcggcggctccagcagcagcagc
agcgggggcagtggcaacgcagacgccatgtccctgggatctgaccagtgctcggactac
ggatgccagactgggaacaagtacagcaaacaggggacccttcgccgggtgaccttctcc
gtggtcagccagccccaggacgccggctgctacgacagcggcccggaggactcggagacg
ccgagcagcaagagctcgtcggggccgcggctcggagcgctgccgctgcccgaggagggc
tacgagcggaccaccccggagggcagcgtgggggaggaggagcacgtagagaacgatgcc
agacagctgccagatgtggctctgacaggaaagtgcaccagggagtgtgatgagttcggc
cactctgacacctgctggatgcccgtgagccactcgccccgccagcgccacggcagcgac
ccccctcggctctccaccttcgcccccggagacgacaacaacaacctgcgtggcaacgac
cacgagagcgacagcgagagcgccggcagcgcggggagctcagagcccggggtggtggtg
gtggtgggcggagacggtcagaggtttcccctggccaatggggatcccctcggcaccctc
gggggcggagaccgcaacaggaacatgggcgaccacaaccgcaaccttctgaaccgcaag
atgacctctgcgtcctacgatacgttcagcagcgcgggcttcgggaggcgacagcaggac
gaggaagggggagagggccagaacccggccgaggtcataccgctgacgcgcacgggaggg
gactacaagaccacgtcctgcctcacgctgtcacgccgagaggtctacctgtga
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integrated database retrieval system
