Pseudoliparis swirei (Mariana hadal snailfish): 130190767
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Entry
130190767 CDS
T09868
Symbol
pkd2
Name
(RefSeq) polycystin-2
KO
K04986
polycystin 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pswi03037
]
130190767 (pkd2)
04040 Ion channels [BR:
pswi04040
]
130190767 (pkd2)
Cilium and associated proteins [BR:
pswi03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
130190767 (pkd2)
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
130190767 (pkd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PKD_channel
Polycystin_dom
Ion_trans
Fer4_24
EF-hand_1
EF-hand_7
EF-hand_6
Motif
Other DBs
NCBI-GeneID:
130190767
NCBI-ProteinID:
XP_056266335
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All DBs
Position
24:complement(9298043..9306818)
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AA seq
903 aa
AA seq
DB search
MSSSRVKPQPPPQSQTAMSPHTLDSGEGIEMENIQHQDLGLGGVTGTPSPPSRQAWSRDN
PGFEAEEEIMEADWPPASPGRRSVSTASSSSCSSGLGNYTGAGSSTQVPRGGLYPTPTVD
ARQQDSHDHRSCMKQILQRIRILWGTELMEDSDSSRERYLRNVLREMITYITFLITICIL
TYGMVSANMYYYTKVMSQLFLDTPLSAGDPSSFRSLSTMEDFWKFTEGPFLNGMYWEVWY
NNKSLPENQSLIYYENLLLGVPRLRQVKVRNESCSVHEDLRDEVLDCFNMYTPTNEQTTS
FGPKNGTAWVHTAESDMNGSGYVGQISKYRGGGYYQDLSRTKEESATQLQFLKDQLWLDR
GTRAVFLDFSVYNGNINLFCIARLLVEFPATGGVVTSWQFQTVRLIRYVSGWDYFVGLCE
VAFCLFILYYMVEEVLEIRIHRLHYFKSLWNCLDVLIVMLSVVAIIMNITRTAMVGNRLK
GLLENHTAHPSFEPLANLQIQFNNMAAVIVFFSWIKLFKFINFNKTMSQLSGTMSRCAKD
LVGFAIMFFIIFLAYAQLAYLVFGTQVNDFSTFQASIFTQFRIILGDFEFSEIEEANPVL
GPIYYTTFVFFIFFILMNMFLAIINDTYSEVKADMSQQRSEMEMTDLLKKGCNKALMKLR
LKKTAVDDISDSLRQAGGKLNFNELRQDLKGKGHTDAEIQAIFAKYDHDGDQELTEHEHQ
QMRDDLEKEREDLDLERNSLTRPSSGRSFPRTQEDSEEDDDEDSGHSSRHRGSSSGGVSY
EEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLETMERAVLRRRDVLGRLLDGVMEDERLGR
DTDVHSELMERLVREELERCESDDVVSQVSHPQSATPVGPRPRPPSSLSTDGLDMSTNGS
SHV
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgagttcctcccgagtcaaaccgcagccgccgccgcagagccagactgccatgtcgccg
cacacactcgactcgggcgaggggatagagatggagaacatccagcaccaagacctgggt
ctcggaggagtcacaggcaccccgtccccaccgtcgagacaagcgtggagccgggacaac
ccgggctttgaggccgaggaggagattatggaagccgactggcctccggcgagccccggg
aggaggtcggtgtccacggcctccagcagcagctgcagcagcggcctgggcaactacacc
ggcgcgggcagcagcacccaggtcccccgaggaggactctacccgaccccgactgtggac
gcccggcaacaggacagccacgaccaccgcagctgtatgaagcagatactccaaaggatc
agaattctgtggggcacagagctgatggaggacagtgacagcagtagagagaggtacctc
aggaacgtgctgagggagatgattacatatatcacgttcctcatcaccatttgtatcttg
acctatgggatggtgagtgccaatatgtactactataccaaagtcatgtctcagctgttc
ttggacacaccgctgtctgccggggacccttcctcttttagaagcctctcaaccatggag
gacttctggaagttcacagagggacctttcctcaatggcatgtactgggaggtgtggtac
aacaacaagagtctgccagagaatcagagtctcatctactacgagaacctcctcctcgga
gtgccacggctccggcaggtcaaagtccgaaacgaatcctgctccgtccacgaagatctg
agagacgaggtgctggactgcttcaacatgtacaccccaaccaacgagcagacgacctcc
tttggccccaagaatggaaccgcgtgggtgcatacggcagagagtgacatgaacgggagt
ggttatgtgggccagatatctaaatatagaggtggagggtactaccaagacctgtcccga
actaaagaggagtcagcaacccaactgcagtttctcaaagaccagctgtggttggacaga
ggcaccagagcggtgttcctcgacttctctgtctacaatgggaacatcaaccttttctgc
atcgccaggttgttggtggagtttcctgctactggtggggtggtgacctcttggcagttc
caaacagtgcgtctgatacgctatgtgtccggctgggactactttgtgggtctgtgtgag
gtggcgttctgtctcttcatcctctactacatggtggaggaagtgctggagatccgcatc
caccgcttgcattacttcaagagcctgtggaactgcctggatgttctcattgtcatgttg
agtgtcgttgccatcattatgaacataaccagaaccgccatggttggcaaccgtctgaaa
ggcctgttggagaaccacactgctcaccccagttttgagcctttagccaacctgcagatc
cagttcaacaacatggccgcagtcattgtctttttttcctggatcaagctttttaagttc
atcaacttcaataagaccatgagccagctgtccggcactatgtctcgctgtgccaaggac
ctcgtgggttttgccatcatgttcttcatcatcttcctggcgtatgctcaactagcctac
ctggtgtttggaacccaagtcaacgatttcagcactttccaagccagcatatttacccag
ttccgtatcattctgggagactttgagttctcagaaatagaggaagcaaatccagtgctt
ggacccatctactatacaacctttgtcttcttcatcttctttattctcatgaacatgttc
cttgccatcatcaatgacacatactctgaggtgaaggccgacatgtcccagcagaggtct
gagatggaaatgactgatctccttaagaagggctgtaacaaagctttaatgaagttgaga
ctcaagaagacggcagtagacgacatctccgacagtttgcgtcaggccggggggaaacta
aactttaatgaactccgccaggatcttaaaggaaagggccacacggacgcagagatccag
gcaatctttgccaagtatgatcacgacggcgaccaggagctgacggagcatgaacaccag
cagatgagagacgacctggagaaagagcgagaggacttggatctggaacgcaattcgctg
actcgacccagcagtgggcggagctttccccgtacacaggaggactcggaggaagacgat
gatgaggatagcggccacagctctcgtcaccgcggcagcagctcagggggcgtctcctat
gaagagtttcaagtgctggtgagacgtgtggacagaatggagcactcaatcggcagcatc
gtgtccaaaatagatgctgtgatcgtgaagttggaaactatggagagagccgtactcaga
aggagagatgtgctgggcagattgctggacggagtcatggaggatgagcgtctgggacgg
gacacagacgtccacagtgagctgatggagaggctagtgagggaggagctggagcgctgc
gagtccgacgatgtggtctcacaggtcagccacccacagtctgccactcccgtcggcccc
cggccccgcccgccctcctccctgtccaccgacggcctcgacatgagcacgaacgggagc
agccatgtgtga
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