Pseudoliparis swirei (Mariana hadal snailfish): 130190972
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Entry
130190972 CDS
T09868
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130190972 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130190972 (nup98)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130190972 (nup98)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
130190972 (nup98)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
130190972 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
130190972
NCBI-ProteinID:
XP_056266614
LinkDB
All DBs
Position
3:24775782..24796913
Genome browser
AA seq
1845 aa
AA seq
DB search
MFNKSFGTPFGGGTGAFGTSSTFGQPNAAFGATGGFGTSAFGATANTGGLFGPAQSKPGG
LFGSSTFTQPAATATNTAFGFGAATGTATSLFGNTGAGASGGLFSQPSNAFGAQKPTTFG
KVSLPSCPPGFGTSTTAGGLFGATSTAASNPFGGGGGGGVASLFGGAGFTAAQQQPGTTV
KFNPPTGTDTMVKAGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPANPMAAP
TGSMFGAAAATSSAATGLFGAAAPNTNFSFGQNKTTFGAAAPAAAGFGAVTGGLFGQPAP
QPAGSLFKPFGQTTTAPSAGFSFGNTSTMGQASTGTMGLFGNAAAPQAGGLFGAAQPSTA
AGFGAATGLFGQPNAGFGAVGAQQSLFGNKAAGFGTTTTSAAPSFGTGTGLFGNKPALTL
GAGANTSTFGFGANPATGSLFGSKPAAGGLGTALGTSFGAVGTGQPSLFGNNQSKLGATL
GTMGSFGATAFNTGASSLGFGAPQQPIALTDPAAMASQQALLQQQLSVLAYSPYGDSPLF
RNPLTDPKKKEERLKPTNPTAQKALTTPTHYKLTPRPATRVRPKALSSSASKTQLFDGLD
DDEPSLTNGAFVPRKSIKKLVLKNLNSSQYNSPISKETDDLASPPEYPHNGHSHTEEEEG
RPGPSSRADDDPEVTQFYVNPVAKPLPQGRVQASLQDTISDLNMHKAARNGGLELSREDM
MASPGDESLQVEEVEEVEVVVEEIQQAPHPAGIVLNRVGYYTIPSMDDLSEMVDEGGVCV
VDNFTVGRKGYGSIFFPGEVDVTALNVDEIVHFRRKEVIVYPDDKNKPAEGEGLNRRAEV
TLDGVWPNDKTACAQIRSPERLAEMNYEGRLEKASRKQGARFLEYRAETGSWVFEVAHFS
KYGLQDSDEEEDEPLKADPKKMKVMSALPARLQLPASQQQVALQAQPDAVELPGGVAELD
SDMADITQSFPTESMLGDDDLDRSAERLGGPGPAESDGVSASGRMASSLGINPHTLQIMK
ASLFAEEEEEDMLEDQRVTKVDVSSPRIVVPGTPSRPSVGGLLQARFTSGLFSQLADSPR
PPLLPLPRGSPREPPRPSPFLLPPRTPELSVRTVGARRLGGPVALEQSVTRGKGALLMDA
GLFVGRSFRVGWGPGWTLAHCGERLGSLAGKRPDRHELTTTDFSFLPKPARSKPLMETPY
KVVLERLQGLETPMKTWDQDLDQDRVQDLDRDQDRDQDRDQAVLQRPLEICLKHSTVVTG
HASSCPLVRPQPGVAALHEYAEWIVELSGENGGADPLLGSWSEVWTLCEALWGRLGPADP
EPDAEPPGAYEQQLERRRSFSAWLSRGAARRVEEEVALAAKGRHADAVFSYLTGNRVSEA
CRLAQKEGDHRLALLLAQAGGAQDCRDLLGLQLADWSRMQTDCFLPEERLRIFTLLSGKL
VWPSSDSVVNVCSELDWKRCLAVHLWFMLPPTASVADALARYEAAFQGSCEGGKYACAPL
PPYLEAEQPDTMEEEEEEEPKRPLHDLCFHLLKLYSDRHYGLQQLLDPLSVTWQRLDYRL
SWHLWSVLQALAFGHLSAARRGLLHASYAALLESAGLWHMAVFILLHIPDHSQRERAVRA
MLTLHCRLQETDESLRRELFLTERLLIPGQWLHEAKATRARSAGDRHREALHLYRAGLWS
RCHRLLIRHLASDCIINDNHDYLLEFLEGLAVPERSATIQDWDTAGGVYLDYIRVTKTLQ
DVQQVETSGYALERLHADVTSLCSRIELLPCSSARDRLAQSEMAKRVANILRVVLRLQLG
ASDSLAVPLARLAPHIGRLPMPEDYALEELRGLTQAYLRQLIVGQ
NT seq
5538 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcattcggcactcccttcggcggcgggacgggggcgttcggcacctcg
tccaccttcggacaaccaaacgcggccttcggggcgacgggaggcttcgggacgtcggcg
ttcggggccaccgccaacaccggagggctgttcggcccggcgcagagtaaacctggcggg
ctgtttggctccagcacgttcacccagccggcggcgaccgccaccaacaccgccttcggg
ttcggcgcggcgaccggcacggcgaccagcttgttcgggaacaccggcgcgggcgccagc
ggcggcctcttctcccagcccagcaatgctttcggagcccagaagcccaccacgtttgga
aaagtctccctcccatcgtgtcctccaggctttgggaccagcaccaccgccggcgggctg
ttcggggccaccagcaccgccgcctccaaccccttcggtggcggcggcggcggcggcgtg
gcctccctgttcgggggcgcgggcttcaccgccgctcagcagcagccgggaaccaccgtg
aagttcaacccgccaacaggaaccgacaccatggtgaaggccggtgtgaccacgagcatc
aacaccaagcaccagtgcatcacggccatgaaggagtacgagaacaagtcgctggaggag
ttgaggctggaggactaccaggccggcaggaagggtccggccaacccgatggcggctccg
accggcagtatgttcggtgccgccgccgcgacgtccagcgccgccaccggcctgttcggc
gccgcggcgcccaacaccaacttctccttcgggcagaacaagaccacgttcggagccgca
gcgccggccgccgccggtttcggcgcggtgaccggcggcctgttcggccagccggccccc
caaccggccggcagcctgttcaagcccttcggccagaccaccaccgcgccgagcgccggc
ttctccttcggcaacaccagcaccatgggccaggccagcaccggcaccatgggtctgttc
gggaacgccgcggcgcctcaagcgggcggcctgttcggcgcggcgcagcccagcaccgcc
gccggcttcggggcggccaccgggctgttcggacagcccaacgccgggtttggagccgtc
ggcgcgcagcagagtctgttcggcaacaaggccgccgggttcggcaccaccaccaccagc
gccgccccgtccttcggcaccggcaccgggctcttcggcaacaagcccgccctcacgctg
ggcgccggcgccaacacctccaccttcggtttcggcgccaacccggcgaccgggagtctg
tttgggagcaagccggccgccgggggcctcgggacggcactgggaaccagcttcggagca
gtgggaacaggccagccgtctctgtttgggaacaaccagagcaaactgggcgccacactg
ggaacgatgggaagcttcggcgcgaccgcattcaacaccggagccagcagcctcggcttc
ggagcgccacagcagccaatcgcgctcacggaccccgctgccatggcctcccagcaggct
ctgctccagcagcagctcagcgtcttggcctactctccgtacggagactctcctctgttc
aggaacccgctgacggaccccaagaagaaggaggagcgcctgaaaccgaccaatccgacg
gcccagaaggctctgaccacgcccacccactacaagctgaccccccgcccggccaccagg
gtgcgccccaaggcgctgtcgtcctcggcctccaagacgcagctcttcgacggcctggac
gacgacgagccctcgctcaccaacggagccttcgtacccaggaagagcatcaagaaactg
gtgctgaagaacctgaacagcagccagtacaacagtccaatcagcaaagagacggacgac
ctcgcctcaccgccagagtacccacacaacggacacagtcacacggaggaggaggagggg
aggccgggtcccagcagccgggcggacgacgaccccgaggtcacccagttctacgtcaac
cccgtcgctaagcccctcccacagggccgcgtgcaggccagcctgcaggacaccatcagc
gacctcaacatgcacaaagcggccaggaatggaggcctggagctgagccgtgaggacatg
atggcgtctcctggtgacgagtcgctgcaggtggaggaggtggaggaggtggaggtggtg
gtggaggagatccagcaggctcctcacccggcaggcatcgttctgaaccgcgtgggctac
tacaccatcccctccatggacgacctctcggagatggtggacgagggcggcgtgtgcgtg
gtggacaacttcaccgtcggcaggaaaggctacggctccatcttcttccccggcgaggtg
gacgtgacggcgctaaacgtggacgagatcgtgcacttcagacgcaaagaggtcatcgtg
tacccggacgacaagaacaagcccgcggagggggaggggcttaacaggcgagcggaggtg
accctggacggcgtctggcccaacgacaagacggcctgcgctcagatccggagccccgag
cgcctcgcggagatgaactacgagggccggctggagaaggcctcgcgcaagcagggcgcg
cgcttcctggagtacagggcggagaccggctcctgggtgttcgaggtggcccatttctca
aagtacggcctccaggactctgatgaagaggaggacgagccgctcaaagccgaccccaaa
aagatgaaggtgatgtcggcgctccccgccaggctgcagctgcccgcctcccagcagcag
gtggcgctacaggctcagcctgacgccgtggagctgccgggcggcgtggccgagctggac
agcgacatggccgacatcacccagagcttcccgacagagagcatgctgggagacgacgac
ctggaccgcagcgccgagcggctcgggggcccgggccccgccgagagcgacggcgtgtcg
gcgtccggccgcatggcgtcctcgctcggcatcaacccgcacactctgcagatcatgaag
gcgtcgctgttcgccgaggaagaggaggaggacatgctggaggatcagcgcgtgacgaag
gtcgacgtctcgtctcctcgcatcgtcgtgccgggaacgccgagccgcccctccgtgggg
gggcttcttcaggctcgcttcacctccggcctcttctcccagctggccgactctcctcgt
cctcctcttcttcctcttcctcgggggtctcccagagagcccccccgcccctcccccttc
ctgctgcccccccgcaccccggagctgtccgtcaggacggtcggcgcccggcggctcggg
ggcccggtggccctggagcagtcggtcactcgggggaagggcgctctgctgatggacgcc
gggctcttcgtgggccggtccttccgggtcggctggggccccggctggacgctggctcac
tgcggcgagcggctcggctcgctggcgggcaaacgtcccgaccgccatgaactcaccacg
acggacttcagcttcctgccgaaacccgccaggagcaaaccgctgatggagaccccctac
aaggtggtgctggagcggctgcagggcctggagacccccatgaagacctgggaccaggac
ctggaccaggaccgggtccaggacctggaccgggaccaggaccgggaccaggaccgggac
caggcggtgctgcagcgccccctagagatctgcctgaagcacagcaccgtggtcaccggc
cacgcctcctcctgcccgctggtgcgcccgcagcccggcgtggcggcgctgcacgagtac
gccgagtggatcgtggagctgagcggcgagaatggcggagccgaccccctcctgggctcc
tggtccgaggtctggaccctgtgcgaggccctgtggggccggctgggccccgccgacccg
gagcccgacgccgagccgcccggcgcctacgagcagcagctggagaggaggcggagcttc
tcggcctggctgtcccgcggcgccgctcgccgggtggaggaggaggtggcgctggcggcg
aagggtcggcacgccgacgccgtgttcagctacctgacggggaaccgggtcagcgaggcg
tgccgcctggcgcagaaggaaggagaccaccgattggctctgctgctggcgcaggccggc
ggcgcccaggactgccgggacctgctgggcctgcagctcgccgactggagccgcatgcag
accgactgcttcctgcccgaggagcggctgcgcatcttcacgctgctctccgggaaactc
gtgtggccgtcctctgactcggtggtgaacgtgtgctccgagctggactggaagcgctgc
ttggcggtgcacctgtggttcatgctgccgcccacggcctccgtggccgacgccctcgcc
agatacgaagccgccttccagggctcatgtgagggggggaagtacgcctgcgccccgctg
cccccgtacctggaggcggagcaaccggacacgatggaggaggaggaggaggaggagcct
aaacggccgctgcacgacctctgcttccacctgctgaagctctacagcgacagacactac
ggcctgcagcagctgctggaccccctgagcgtcacctggcagcgtctggactaccggctc
agttggcacctgtggagcgtcttgcaggcgctggcgttcggccacctgagcgcggcgcgg
cgcggcctgcttcacgccagctacgccgcgctgctggagagcgccgggctgtggcacatg
gccgtcttcatcctgctgcacatccccgaccacagccagcgggagcgtgcggtgagggcg
atgttgacccttcactgccgcctgcaggagacggacgagtctctgcggcgggagctgttc
ctgacggagcggctgctgatcccgggtcagtggctccacgaggccaaggccacccgcgcc
cgcagcgccggcgaccgccaccgggaggcgctgcacctgtaccgcgccgggctctggagc
cgctgccaccggctgctcatccggcacctggcctcggattgcatcatcaacgacaaccac
gactacctgctggagttcctggaggggctggcggtccctgaacgcagcgccaccatccaa
gactgggacacggcggggggggtctacctggactacatccgggtcaccaagaccctgcag
gacgtccagcaggtggagacctccggctacgcgttggagcgtctccatgccgacgtcacg
tctctgtgcagcagaatcgagctgctgccctgcagctccgccagggaccggctcgcccaa
tcagagatggcgaagcgcgtggccaacatcctgcgcgtggtgctgcggctgcagctcggc
gcctccgactcgctcgccgtgccgctcgcccgcctggcgccgcacatcggccgcctgccg
atgcccgaggactacgcgctggaggagctgcgcggcctcacgcaggcgtacctgcgccag
ctcatcgtcggccaatga
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