Pseudoliparis swirei (Mariana hadal snailfish): 130190978
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Entry
130190978 CDS
T09868
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130190978 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130190978 (copa)
Membrane trafficking [BR:
pswi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
130190978 (copa)
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
130190978 (copa)
Exosomal proteins of bladder cancer cells
130190978 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
130190978
NCBI-ProteinID:
XP_056266621
LinkDB
All DBs
Position
Unknown
AA seq
1222 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHDYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPSAVETD
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMIVFKLERERPAYAVHSNVLFYVKERFLRQLDFSSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRASNLENSTYDLYSIPKESDSQSPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVFCLDRECRPRVLTIDPTEYRFK
LALVNRKYDEVLHMVRTAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQAALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAEALKETFDP
EKETVPEVDPDAQLLQPAPPINPLDTNWPLLTVSKGFFEGAISAKGKAGQMAADPDMEAP
GGEGWGDDAELQLDEDGFVDAQEGSGEEGGIKEEGGGWEVEEDLDLPPELDLPPGGGGGS
EDGFFVPPTKGTSPTQMWCNNSQLPVDHVLAGSFETAMRLLHDQVGVVNFEPYKSLFMQT
LSRGRTCYLGLPSLPCLRSQPQRNWKDCGAKQGLPAVGLRLSDLIARLQHCYQLTTSGRF
EEAVERFRVILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKDTLDQQK
RLCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAASFARRLLELGPKPDVAQQTR
KILAACEKTLTDAHQLNYDPHNPFDLCGASFVPLYRGRPVEKCPLSGACYCPTYKGQVCR
VTEVTEIGKDVIGLRVSPLQFR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgttgactaaatttgaaaccaagtcggcccgcgtcaaaggcctgagcttccacccgaag
aggccgtgggttctggccagcctgcacaacggagtgatccagctgtgggactaccgcatg
tgcaccctgatcgacaagttcgacgagcacgacggtcccgtcagaggaattgatttccac
aaacagcagcctctgtttgtgtcgggaggagacgattacaaaatcaaggtgtggaactac
aaactgagacgctgcctcttcactctcctcggacacctggactacatcaggacgaccttc
ttccaccacgattacccctggatcctgagcgcctcggatgaccagactattcgcatctgg
aactggcagtcgaggacctgcgtctgtgtgctgaccggccacaaccactatgtgatgtgc
gcccagttccacccctctgaggacctggtggtgtcggccagtctggaccagaccgtgcgc
gtgtgggatatttccggtctgaggaagaagaacctgtcgcccagcgccgtggagacggac
gtgcgcggcatctccggcgtcgacttgttcggcgcctcggacgccgtcgtgaagcacgtc
ctcgagggtcacgaccgcggggtcaactgggcggccttccaccccaccatgccgctcatc
gtgtccggagccgacgaccggcaggtgaagatctggaggatgaacgagtccaaggcgtgg
gagctggacacgtgccgcggccactacaacaacgtgtcctgcgccgtgttccaccctcgc
caggagctcatcctgtccaactccgaggacaagagcatccgcgtgtgggacatgtccaag
aggaccggcgtgcagaccttccgccgcgaccacgaccgcttctgggtgctgggcgcccac
cccaacctcaacctgttcgccgccggacacgacagcggcatgatcgtgttcaagctggag
cgcgagcggccggcatacgccgtccacagcaacgtgctgttctacgtgaaggagcgcttc
ctccgccagctggacttcagcagcagcaaggacacggccgtcatgcagctgcgcagtggg
tccaagttcccggtgttcagcatgtcttacaacccggctgagaacgcggtcctgctctgc
accagggcgagcaacctggagaacagcacctacgacctgtactccatccccaaagagagc
gactcccagagccccgacgcgccggaggggaagaggtcctccgggctcacggccgtctgg
gtcgcccggaaccgcttcgccgtcctggaccgcatgcactcgctgctcatcaagaacctg
aagaacgagatcgtgaagaaggtgcaggtcccgagctgcgaggagatcttctacgccggg
acgggctccctgctgctgcgcgacgcggacggcgtgacgctgttcgacgtgcagcagaag
cgctcgctcgccacggtgaagatcgccaaggtcaagtacgtggtgtggagcgccgacacc
agccacgtggcgctgctcgccaagcacgccatcatgatctgcaaccgcaagctggagagc
ctgtgcaacatccacgagaacatccgtgtgaagagcggcgcctgggacgagagcggcgtc
ttcatctacacgacctccaaccacatcaaatacgccctcacctccggtgatcatggtatc
atccggaccctggacctgcccatctacgtgacgcgcgtgcgaggcaacagcgtcttctgc
ctggaccgcgagtgcaggccgcgcgtcctcaccatcgaccccacggagtaccgcttcaag
ctggcgctggtcaaccgcaaatacgacgaggtgctccacatggtgcgcaccgccaagctg
gtgggccagtccatcatcgcctacctgcagaagaagggctacccggaggtggcgctgcac
ttcgtgaaagacgagaagacgcgcttcagcctcgctctggagtgcggcaacatcgaggtg
gcgctggaggccgccaaggcgctggacgagcgcagctgctgggagcgcctgggggaggcg
gcgctgctgcagggccaccaccaggtggtggagatgtgctaccagaggaccaagaacttc
gacaagctcaccttcctctacctcatcaccggcaacctggccaagctgcgcaagatgatg
aagatcgccgagatcaggaaggacatgagcggccactaccaggcggcgctgtacctgggc
gacgtcagcgagagggtccgcatcctcaagaactgtgggcagaagtccctggcctacctg
acggcggccacccacgggctggacgaggaggccgaggccctgaaggagacctttgacccc
gagaaggagacggttcccgaagtcgaccccgacgctcagctgctgcagccggcgccgccc
atcaacccgctggacaccaactggccgctgctcaccgtgtccaagggcttctttgagggc
gccatctcggcgaaggggaaggccgggcagatggccgccgaccccgacatggaggccccg
ggcggtgagggctggggagacgacgccgagcttcagctggacgaagacggtttcgtggat
gctcaggaaggatccggggaagaaggagggatcaaggaggagggcggaggatgggaggtg
gaggaagacctggaccttcctccagagctggacctgccgcccggtggaggcggaggatcg
gaggacggcttcttcgtcccgcccactaaaggcacgagtcccacgcagatgtggtgcaac
aactcccagctgccggtggaccacgtcctggctggctccttcgagaccgcaatgaggttg
ctccacgaccaggtgggagttgtgaacttcgagccctacaagtcgctgttcatgcagacg
ctgtccagaggccgcacctgttacctggggctgccatccctgccctgcctgcgcagccaa
ccccagaggaactggaaggactgtggcgcaaagcaaggcctgcccgctgtgggcctgcgc
ctctccgacctcatcgcccgcctgcagcactgctaccagctgacgacgtcggggcgcttc
gaggaagccgtggagcgcttccgagtcatcctgctgtccgtccctctgctggtggtggac
aacaagcaggagattgcagaggctcagcagctaatcaccatctgcagagagtacatcgtg
ggtctcaccatggagacggagaggaagaagttgcctaaggacactctggatcagcagaag
aggctgtgtgagatggctgcctacttcacccactgcaatctgcagcccgtccacatggtg
ctggtgttgcgcacggccctgaacctcttcttcaagctgcgtaacttcaagacggccgcc
agcttcgctcgccgcctcctggagctgggcccgaagcccgacgtcgcccagcagacgcgc
aagattctggcggcctgcgagaagaccctgacggacgcccaccagctgaactacgacccc
cacaacccgttcgacctgtgcggcgcctccttcgtgcccctgtaccgcgggcgccccgtt
gagaagtgccccctgtccggagcgtgctactgccccacgtacaagggccaggtctgcagg
gtcaccgaggtgacggagatcggtaaggatgtgatcggtctgcgcgtgagtcctcttcag
ttccgttga
DBGET
integrated database retrieval system
