Pseudoliparis swirei (Mariana hadal snailfish): 130190978
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Entry
130190978 CDS
T09868
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130190978 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130190978 (copa)
Membrane trafficking [BR:
pswi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
130190978 (copa)
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
130190978 (copa)
Exosomal proteins of bladder cancer cells
130190978 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
130190978
NCBI-ProteinID:
XP_056266621
LinkDB
All DBs
Position
Unknown
AA seq
1222 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHDYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPSAVETD
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMIVFKLERERPAYAVHSNVLFYVKERFLRQLDFSSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRASNLENSTYDLYSIPKESDSQSPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVFCLDRECRPRVLTIDPTEYRFK
LALVNRKYDEVLHMVRTAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQAALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAEALKETFDP
EKETVPEVDPDAQLLQPAPPINPLDTNWPLLTVSKGFFEGAISAKGKAGQMAADPDMEAP
GGEGWGDDAELQLDEDGFVDAQEGSGEEGGIKEEGGGWEVEEDLDLPPELDLPPGGGGGS
EDGFFVPPTKGTSPTQMWCNNSQLPVDHVLAGSFETAMRLLHDQVGVVNFEPYKSLFMQT
LSRGRTCYLGLPSLPCLRSQPQRNWKDCGAKQGLPAVGLRLSDLIARLQHCYQLTTSGRF
EEAVERFRVILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKDTLDQQK
RLCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAASFARRLLELGPKPDVAQQTR
KILAACEKTLTDAHQLNYDPHNPFDLCGASFVPLYRGRPVEKCPLSGACYCPTYKGQVCR
VTEVTEIGKDVIGLRVSPLQFR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgttgactaaatttgaaaccaagtcggcccgcgtcaaaggcctgagcttccacccgaag
aggccgtgggttctggccagcctgcacaacggagtgatccagctgtgggactaccgcatg
tgcaccctgatcgacaagttcgacgagcacgacggtcccgtcagaggaattgatttccac
aaacagcagcctctgtttgtgtcgggaggagacgattacaaaatcaaggtgtggaactac
aaactgagacgctgcctcttcactctcctcggacacctggactacatcaggacgaccttc
ttccaccacgattacccctggatcctgagcgcctcggatgaccagactattcgcatctgg
aactggcagtcgaggacctgcgtctgtgtgctgaccggccacaaccactatgtgatgtgc
gcccagttccacccctctgaggacctggtggtgtcggccagtctggaccagaccgtgcgc
gtgtgggatatttccggtctgaggaagaagaacctgtcgcccagcgccgtggagacggac
gtgcgcggcatctccggcgtcgacttgttcggcgcctcggacgccgtcgtgaagcacgtc
ctcgagggtcacgaccgcggggtcaactgggcggccttccaccccaccatgccgctcatc
gtgtccggagccgacgaccggcaggtgaagatctggaggatgaacgagtccaaggcgtgg
gagctggacacgtgccgcggccactacaacaacgtgtcctgcgccgtgttccaccctcgc
caggagctcatcctgtccaactccgaggacaagagcatccgcgtgtgggacatgtccaag
aggaccggcgtgcagaccttccgccgcgaccacgaccgcttctgggtgctgggcgcccac
cccaacctcaacctgttcgccgccggacacgacagcggcatgatcgtgttcaagctggag
cgcgagcggccggcatacgccgtccacagcaacgtgctgttctacgtgaaggagcgcttc
ctccgccagctggacttcagcagcagcaaggacacggccgtcatgcagctgcgcagtggg
tccaagttcccggtgttcagcatgtcttacaacccggctgagaacgcggtcctgctctgc
accagggcgagcaacctggagaacagcacctacgacctgtactccatccccaaagagagc
gactcccagagccccgacgcgccggaggggaagaggtcctccgggctcacggccgtctgg
gtcgcccggaaccgcttcgccgtcctggaccgcatgcactcgctgctcatcaagaacctg
aagaacgagatcgtgaagaaggtgcaggtcccgagctgcgaggagatcttctacgccggg
acgggctccctgctgctgcgcgacgcggacggcgtgacgctgttcgacgtgcagcagaag
cgctcgctcgccacggtgaagatcgccaaggtcaagtacgtggtgtggagcgccgacacc
agccacgtggcgctgctcgccaagcacgccatcatgatctgcaaccgcaagctggagagc
ctgtgcaacatccacgagaacatccgtgtgaagagcggcgcctgggacgagagcggcgtc
ttcatctacacgacctccaaccacatcaaatacgccctcacctccggtgatcatggtatc
atccggaccctggacctgcccatctacgtgacgcgcgtgcgaggcaacagcgtcttctgc
ctggaccgcgagtgcaggccgcgcgtcctcaccatcgaccccacggagtaccgcttcaag
ctggcgctggtcaaccgcaaatacgacgaggtgctccacatggtgcgcaccgccaagctg
gtgggccagtccatcatcgcctacctgcagaagaagggctacccggaggtggcgctgcac
ttcgtgaaagacgagaagacgcgcttcagcctcgctctggagtgcggcaacatcgaggtg
gcgctggaggccgccaaggcgctggacgagcgcagctgctgggagcgcctgggggaggcg
gcgctgctgcagggccaccaccaggtggtggagatgtgctaccagaggaccaagaacttc
gacaagctcaccttcctctacctcatcaccggcaacctggccaagctgcgcaagatgatg
aagatcgccgagatcaggaaggacatgagcggccactaccaggcggcgctgtacctgggc
gacgtcagcgagagggtccgcatcctcaagaactgtgggcagaagtccctggcctacctg
acggcggccacccacgggctggacgaggaggccgaggccctgaaggagacctttgacccc
gagaaggagacggttcccgaagtcgaccccgacgctcagctgctgcagccggcgccgccc
atcaacccgctggacaccaactggccgctgctcaccgtgtccaagggcttctttgagggc
gccatctcggcgaaggggaaggccgggcagatggccgccgaccccgacatggaggccccg
ggcggtgagggctggggagacgacgccgagcttcagctggacgaagacggtttcgtggat
gctcaggaaggatccggggaagaaggagggatcaaggaggagggcggaggatgggaggtg
gaggaagacctggaccttcctccagagctggacctgccgcccggtggaggcggaggatcg
gaggacggcttcttcgtcccgcccactaaaggcacgagtcccacgcagatgtggtgcaac
aactcccagctgccggtggaccacgtcctggctggctccttcgagaccgcaatgaggttg
ctccacgaccaggtgggagttgtgaacttcgagccctacaagtcgctgttcatgcagacg
ctgtccagaggccgcacctgttacctggggctgccatccctgccctgcctgcgcagccaa
ccccagaggaactggaaggactgtggcgcaaagcaaggcctgcccgctgtgggcctgcgc
ctctccgacctcatcgcccgcctgcagcactgctaccagctgacgacgtcggggcgcttc
gaggaagccgtggagcgcttccgagtcatcctgctgtccgtccctctgctggtggtggac
aacaagcaggagattgcagaggctcagcagctaatcaccatctgcagagagtacatcgtg
ggtctcaccatggagacggagaggaagaagttgcctaaggacactctggatcagcagaag
aggctgtgtgagatggctgcctacttcacccactgcaatctgcagcccgtccacatggtg
ctggtgttgcgcacggccctgaacctcttcttcaagctgcgtaacttcaagacggccgcc
agcttcgctcgccgcctcctggagctgggcccgaagcccgacgtcgcccagcagacgcgc
aagattctggcggcctgcgagaagaccctgacggacgcccaccagctgaactacgacccc
cacaacccgttcgacctgtgcggcgcctccttcgtgcccctgtaccgcgggcgccccgtt
gagaagtgccccctgtccggagcgtgctactgccccacgtacaagggccaggtctgcagg
gtcaccgaggtgacggagatcggtaaggatgtgatcggtctgcgcgtgagtcctcttcag
ttccgttga
DBGET
integrated database retrieval system
