KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130190985
Entry
130190985         CDS       T09868                                 
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03030  DNA replication
pswi03410  Base excision repair
pswi03420  Nucleotide excision repair
pswi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    130190985 (lig1)
   03410 Base excision repair
    130190985 (lig1)
   03420 Nucleotide excision repair
    130190985 (lig1)
   03430 Mismatch repair
    130190985 (lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pswi03032]
    130190985 (lig1)
   03400 DNA repair and recombination proteins [BR:pswi03400]
    130190985 (lig1)
Enzymes [BR:pswi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     130190985 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     130190985 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     130190985 (lig1)
DNA replication proteins [BR:pswi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    130190985 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     130190985 (lig1)
DNA repair and recombination proteins [BR:pswi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     130190985 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     130190985 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     130190985 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 130190985
NCBI-ProteinID: XP_056266637
LinkDB
Position
Unknown
AA seq 1113 aa
MQRSIASFFQPKCKDKAVEKKAAHEPVKKLVKGPLKVQNGAREADSPIKKVARRSRQILD
SDEDEDEEEEQKPVKEEVDEAALDKKEKKDDVFKAVPTPLTPVTPTTPASSASPGTPNSV
SPSEVVKRKTARKMFPKRKLDDSRSLKEEAQAAEEESGRLNKRPRVESGAGSTEEPMEEE
EEEEEEEEQALSEDNGPEEEVKKEEDVKKAEAAESKAKEKKDDEKRPVGLKKKKMEEKEE
EKMEKMEKEKKMEEEKKVKAEENKAKEKMDDKRPLSKKEEKVKKAEAAGKKNKTKEKTED
EKRPVSKKKMMKEEKEEEESSDEKVKKAEVAEKKNKAKEKTEDEKRPVSKKMKIEEEEKK
KKEEEESSDEKVKKAEVAEKKNKAKEKTEDEKRPVSKKMKIEEEEKKKKVEEEKKKKKVE
EEKKKVEEEEESSDEKVKKAEVAEKKNKTKEKTEDEKRPVSKKMKIEAKKKMEEEEEEVM
KKDTLKQEKSPRGQGVRKQEARKTPISSFFAPRKAAAKTEKPEKDDGERKTSGERKTSGE
RKMSTEDQSDDAKGATTSGPPDYDPTRAGYHPVDHACWGWGQKVPYLAVARTFEKIEEES
GRLRNIETLSNLLRSVLLLSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATG
RQLDKIKAAAQEKGDLGLVAESARSSQRTMFTPKRLTAGGVFTKIKDIANMSGNSAMNKK
IDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQDFPPAVLDA
GKGMSAESRRAWIEEKSLILKQTYCEMPNYDVLIPVLLTKGIDELPNHCKLTPGVPLRPM
LAYPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILESGEVRVFSRNQEDNTSKYPDIIS
RIPKVMKDSVLSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLL
YLNGESLVRQPLSRRRALLKESFSEVEGEFVFARSIDSDNTDVIAEFLELSVRDSCEGLM
VKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTMDLCVIGAYLGKGKRAGAYGGFLLACY
DEDNEEFQSVCKIGTGFKDEDLEQHYKFLKVRR
NT seq 3342 nt   +upstreamnt  +downstreamnt
atgcagcggagcatcgcatccttcttccagcccaagtgtaaggacaaggccgttgagaag
aaagctgcccatgaacccgtgaagaaactcgtcaaaggtcccctgaaggtgcagaacggc
gcccgggaagcggactcgcccatcaagaaggtcgcccgacgcagccgccagatcctggac
agcgacgaggatgaagacgaggaggaagagcagaagcccgttaaagaggaagtcgacgag
gcagctctggataaaaaagaaaagaaggacgacgtgttcaaggccgttcccacgccgctg
acccccgtgaccccgaccacgccggcctcatcggcctcgcccggcacccccaactccgtc
tcgccctcggaggtcgtcaaacgcaagacggcgaggaagatgttccccaagaggaagctg
gacgacagcaggagcctgaaagaggaggcgcaggccgcggaggaggagtcgggccggctg
aacaagcgcccccgtgtggagagcggcgcagggagcaccgaggagcccatggaggaggag
gaggaggaggaggaggaggaggaacaggcactgagcgaggataacggcccagaggaggag
gtgaagaaggaggaggatgtgaagaaagctgaagcagcggaaagtaaagcaaaggagaag
aaggatgatgagaaaagacctgttggtttaaagaagaagaagatggaggagaaggaggag
gagaagatggagaagatggagaaggagaagaagatggaggaggagaagaaagtgaaagct
gaagaaaataaagcaaaggagaagatggatgataaaaggccactttccaagaaggaggag
aaagtaaagaaagctgaagcagcgggaaagaaaaataaaacaaaggagaagacggaagat
gagaaaaggcctgtttccaagaagaagatgatgaaggaggagaaagaggaggaagagagc
tctgatgagaaagtaaagaaagctgaagtggcggaaaagaaaaataaagcaaaggagaag
acagaagatgagaagaggcctgtttccaagaagatgaagatagaggaggaggagaagaag
aagaaagaggaggaagagagctctgatgagaaagtaaagaaagctgaagtggcggaaaag
aaaaataaagcaaaggagaagacagaagatgagaagaggcctgtttccaagaagatgaag
atagaggaggaggagaagaagaagaaagtggaggaggagaagaagaagaagaaagtggag
gaggagaagaagaaagtggaggaggaggaagagagctctgatgagaaagtaaagaaagct
gaagtggcggaaaagaaaaataaaacaaaggagaagacggaagatgagaagaggcctgtt
tccaagaagatgaagatagaggcgaagaagaagatggaggaagaggaggaggaggtgatg
aaaaaggacacactaaagcaagagaagagccctagaggtcaaggtgtgaggaagcaggag
gccaggaagactcccatcagcagcttctttgctccgaggaaagctgccgcgaagacggag
aaaccggagaaggacgacggcgagaggaagacgagtggcgagaggaagacgagtggcgag
aggaagatgtcgacggaggaccagagcgacgacgccaaaggagcgacgacctcggggccg
ccggactacgaccccaccagggccggctaccacccggtggaccacgcctgctgggggtgg
ggccagaaagtgccgtacctggcggtggctcgcacctttgagaagattgaagaggaatct
ggcaggctgaggaacatcgagacgctgtccaacctgctgcgctccgtgctgctgctctct
ccagacgacttgctgtgctgtgtgtacctgtgtctgaaccagctgggtccggcctacctg
gggatggagctcggcgtcggggagacggtgctgatgaaagccgttgcccaagcgaccggg
cgccagttggacaagatcaaggcggcggcgcaggagaagggcgacctgggcctggtggcc
gagagcgcccgcagcagccagcgcaccatgttcacgcccaaacgcctcaccgcggggggc
gtgttcaccaagatcaaagacatcgccaacatgagcgggaactcggccatgaataagaaa
atcgacatcatcaaaggactctttgtggcgtgccgcttctcagaggctcgctacatcgtc
aggtcgctggcggggaagctgaggatcggcctggcggagcagagcgtcctgtcagcgctc
agccaggccgtgtgcctgaccccccccgggcaagatttcccccccgccgtgctggacgcc
gggaaggggatgagcgccgagagccggcgggcctggatcgaggagaagagtctcatcctc
aaacagacgtactgcgagatgcccaactacgacgtcctcatccccgtcctgctaacaaaa
ggcatcgacgagctgcccaatcactgcaagctgaccccaggcgtgcccctcagacccatg
ctggcctatcccaccaaaggcgtcggcgaggtgatgaagcggttcgacgaggcggcgttc
acctgcgagtacaaatacgacggagagcgagcacagattcacattctggagagcggagag
gttcgagtgttcagccgcaaccaggaagacaacaccagcaaataccccgatatcatctct
cgcatcccgaaggtgatgaaggactcggtgctctcctgcgtcctcgactcggaggccgtg
gcctgggaccgcgagaagaaacagatccagcccttccaggtcctcaccacccgcaagaga
aaggatgtggatgcctcggagatcaaagtccaagtgtgtgtgtacgcctttgacctcctc
tatctcaacggagagtctctggtgcgacagccgttgagtcggcgtcgggctctgctcaaa
gaaagtttctcagaagtggagggagagtttgtgttcgcccgatccatcgactccgacaac
acggacgtcatcgcggagttcctggaactgtcagtccgagattcctgcgagggtctgatg
gtgaagactctggagaaggatgccacctatgaaattgccaagcgctctcacaactggctc
aagctgaagaaggactacctggacggcgtgggcgacaccatggacctgtgtgtgatcggc
gcctacctggggaagggcaagagggcgggcgcctacgggggcttcctattggcctgctac
gacgaggacaacgaggagttccagtccgtctgcaagatcgggacaggcttcaaggatgaa
gatctggagcagcattacaagttcttaaaggtacggcgctaa

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