Pseudoliparis swirei (Mariana hadal snailfish): 130191694
Help
Entry
130191694 CDS
T09868
Name
(RefSeq) transcriptional regulator ATRX-like
KO
K10779
transcriptional regulator ATRX
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
130191694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130191694
03036 Chromosome and associated proteins [BR:
pswi03036
]
130191694
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
130191694
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
130191694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
130191694
NCBI-ProteinID:
XP_056267330
LinkDB
All DBs
Position
3:complement(9835713..9858466)
Genome browser
AA seq
1886 aa
AA seq
DB search
LTHLHKHVFFLDCSTTPSKLNVLVNKLHEYLAHSTVEDSNGSPTSENAEGLPNRRCSLGN
STGHAETVAGVDTKYSRRKPSIVIKHSGLDESGDSDASEDMDLPVNSNGLIDVTRLPKGT
VLVRPEPVDNGRDDFRGPEFRSRKSGVLRKEFSRRRGGVEHMGIVSCTACGRQVNHYQKD
SFFRHPVLKVLICKSCYKYYSSDDISKDGDGMDEQCRWCAEGGNLICCDFCSNAFCKKCI
LRNLGRKELSGILESKWYCYVCSPETLFDLVMACDNVLENMEHLWYQQRRKNRVEPEKSD
LYAMLPHLPQNIPLDKWDHTGMDGSVVFNYNTLQISKDVTKKAKHLVDSTNILNRTFVNF
IHSVTANKQAPAVRNLYLNSFLSVVKGLRKSLAALEDSLKEEFSDLDVMSCWEKFFSEDF
NAQPGTDAEPDTPDKRCLSDLQKLAAEHLEDYDSDSKGFVAGRTVHACPGENLDLDSHGA
RQRAQKIGLKPSTSGVNMTKKLVVKLTPVPMEQEPSPDAPEKDIHVNDKSEGKDVSDSEE
TDVDGKMSNDNSIASLHAEEEQGNRRSPRIKTTPLRRPSDVKAKTSSAADSDSDSDPEET
CSSAPAKNTEEQSENRARDDSDSDEVPAALLERAAITQSSDEPQSDENGGKASTKVTKKC
LFWLTKNTPISPEKMRRKRKMLDRSPESDSSNRSVKSRRGSGTDSSCDQNSQKKIQHLNT
LRPIGKSHLVKREDEGVARTQGRIQAGKSKAKSHQNAMESSSSDDDEDDEDDTEDSESEG
SDQKMKPITEDVPLMGVAVFHQSSEDEEHSGPSWAAAAEDEEDDEDPENRIAKKMLLAQI
KANYSSGDDISSDEETQEEETVKEGNEDEETDENGEELTSESSDTTSNETKSRHHLLRLK
LTLEEVTPSNEPESIAAKPKSKRRASRKHLSSESESEEEKSESEDLGMSEELSQSEDEAG
GNKLKSSKLSSKVKEAPRSHEQKKAVVPCIWLSDTNSEKSDKEDAGEENSDGKGTPKRRK
KIRKIIDDENLRTETQEAVREEQERCQRLASREQQMEDRRESIVIEDELSQIVCPITTKL
ILDQDELTKKPLVQVHRNLVTWLKPHQVDGVQFIWDCCCESVKKANSSIGTGCILAHCMG
LGKTLQVVTFLHTVLLSENLKFRTALVVCPLNTILNWDGEFKKWQSNMQQDQVKVTELAT
VKNLRERIRALQRWRREGGVMIMGYEMYRNMSLAQTIKDPECKKDLKSLLVNPGPDFVVC
DEGHILRNERSNISKSMNAIRTQRRVVLTGTPLQNNLNEYHCMVNFIKRNLLGSLSEFRN
RFINPIQNGQCADSTSRDVRIMKKRAHVLHAMLVGCVQRRDYSELTQFLPPKHEYVLEVR
VTPHQYRLYRYYLDHVAGVGSLTNTARGRIGANLFKDFQVLSRIWTHPWCLQLNYIDKEN
KSHVKKRKTMKAAALQRNETTAAERRLSWNNNDGSAVMIGAAAAGGERASMSVTSQSPER
WFKNLLSEEDANIMEHSGKMVLLFEILRMAEDLDEKVLVFSQSLISLNLIEDFLKASHQA
RDSSSLKARSWIKNVDYYRLDGSTNAMLRKKWADEFNNVSNVRGRLFLISTRAGSLGINL
VAANRVIIFDASWNPSNDMQSIYRVYRFGQLNQVFVYRFLAQGTMEEKIYDRQVTKQSLA
NRVVDQQQIERHYTFFELTELYTFEPDMLDNPNSKKSKRSISVMPKDIILARLLQTCKDQ
IVAFHEHESLLDHKQEEELSEAERKDAWAEYEAESSNLLAGLHQKTLDTKTNEELLELLN
KSRRDVSVAFEAMQTMSHPVEVLRAKVRQQHPQLPEDAVRDKAGTFWLDEKEQKRREAFY
RGNLAQQQALTLAIQDILKNRRTSLL
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
ctgacacatttacataaacatgttttttttcttgactgtagcaccactccaagcaagctg
aatgtattggtcaacaagctgcatgagtacttggctcattctactgttgaggacagcaat
ggatcaccaacctcagagaatgcagagggtctgccaaacagaagatgttctttggggaac
tctacaggtcatgctgagacagtggcaggagttgataccaaatactcaaggagaaaacca
tctattgtcataaaacactctggactggatgaatctggggactccgatgcaagtgaggat
atggatttaccagttaattcaaatggtctcattgacgtcactagattaccaaaaggcact
gtactggtgaggccggaacctgttgataatggaagagatgacttcaggggtcccgagttt
cggagccggaaatcaggcgtactgcggaaagagttttccaggagacgtggaggagtggaa
cacatgggaatcgtcagttgcactgcatgtggccgacaagtaaaccattaccagaaggat
tccttctttcgacatccagttctgaaagtacttatttgcaagtcttgctacaagtattat
tcaagtgatgacatcagtaaggatggagatggaatggacgagcaatgccgatggtgtgct
gaaggaggcaacttgatctgctgtgacttctgtagtaatgccttctgcaagaagtgtatt
ctcagaaatttgggaaggaaggagctgtctggcatcttggaaagcaaatggtactgctat
gtgtgcagcccagagaccctgtttgacctggtgatggcctgtgacaatgtgcttgagaac
atggagcatctgtggtatcagcagcgcaggaagaaccgagtagagccggagaaatctgac
ctctacgccatgttgccacacctgccacaaaacattcccctggataaatgggatcacact
ggaatggacggtagtgtggtattcaactataacacgctgcagatttccaaggatgttacc
aaaaaggccaaacatttagtggactccacaaacatcttaaaccggacatttgtcaacttc
attcattctgttacggcaaacaaacaagcacctgctgttcgcaatctgtacctgaactct
tttttgtcagtagttaaaggcctgcggaaatccctcgcagcactcgaggatagcctgaag
gaagaattcagcgacttggatgtaatgagctgttgggaaaagttctttagtgaggacttt
aatgcacaacctggaacagacgcagagccagatacccccgataaaaggtgcttgagtgac
ttgcagaaattggcagctgaacatttggaggattatgattcggactccaaaggcttcgtg
gctgggaggaccgtacatgcctgccctggggaaaacttggatttagattcacacggagcg
agacagagggcacagaagattggcctgaagccttccacaagtggggtcaacatgactaaa
aaactagtcgtaaaacttacacctgtaccaatggagcaggagccgtcccctgatgcccca
gagaaggacatccacgtgaacgataagtcagagggaaaggatgtgtcggactctgaagag
accgatgttgacggcaagatgagtaatgacaactcgattgcatctctacacgcagaagaa
gaacaaggcaatagacgctctcctcgtataaagacgacgcctttgcgtcgaccgagtgac
gtcaaggccaaaacgtcttcggcagcagacagtgacagcgactctgacccggaggagacc
tgcagctcggcaccagccaaaaacactgaagaacaaagtgagaacagagcaagagacgac
tctgactccgatgaagtccctgcagctctgcttgagcgagcagctataacgcaaagctct
gatgaaccccagagtgacgagaacggaggaaaagcctcaactaaggtgaccaagaaatgt
ctcttttggctcactaagaacaccccaatctcaccggagaagatgcgccgcaaacgcaaa
atgctggaccgttcccccgagtctgactcgagtaacagaagtgtaaaatcgcgaaggggc
agtgggacagattcctcttgtgatcaaaattcacagaagaaaatacaacacttgaatacg
ctgaggccaatcgggaagtctcacctcgtcaaacgagaggatgaaggcgtggctagaacc
cagggtaggatacaggccggaaagtctaaggctaaatctcaccagaacgcaatggagtcg
tcatcgtctgatgatgacgaggatgatgaagatgacactgaggactctgagagtgaagga
agtgatcagaagatgaagccaatcactgaagatgtgcccttaatgggagtagcagtattc
caccaatcatcggaagacgaggagcactctgggccctcgtgggcagcagcagcagaagac
gaagaagatgatgaagatccagaaaatagaatcgctaagaaaatgctattggcccaaatc
aaagccaactactcctcgggcgacgatatctcttcggatgaggagacgcaggaggaggag
acggtcaaagaaggaaatgaagacgaggaaacggatgagaatggggaagaattgacttca
gaatcctctgacaccacgtctaatgagaccaaatccaggcaccatcttctccgcctcaaa
ctaaccttagaggaggtaacgccaagcaacgagccagagagcattgcagcgaagccgaag
agcaagcggagagccagcagaaaacacctgagctctgagagtgaaagtgaggaggaaaag
tctgagtcggaggatcttgggatgagcgaggagttgagtcagtcagaggatgaggccggt
ggaaacaaactcaaaagctccaaattatccagtaaagtgaaggaggccccccgtagtcac
gagcagaagaaagctgtagtgccctgcatttggttgtctgacaccaacagtgaaaagagt
gataaagaggatgccggtgaggagaacagcgacgggaaaggcactcctaaaagacgcaag
aagatccgcaaaatcattgacgacgagaatctccgcactgagacccaggaagccgtccga
gaggagcaggagagatgccaacgtctggcaagcagggagcaacagatggaggacaggaga
gagagtattgttatcgaggatgagctgagtcaaatagtgtgccccatcaccaccaagctg
atcctggatcaggatgagctgaccaaaaagcctcttgtgcaggtgcacagaaacctggtg
acgtggctgaagcctcaccaggtggacggcgtccagtttatttgggactgttgctgtgag
tctgtgaagaaggccaactcttccattggaacgggctgcatattggctcactgcatgggc
ctgggaaagactctgcaggtggtaactttcctccacacggtgctgctgtcagagaacctg
aaattccgaacggccctggtcgtatgtccgcttaacaccatcctcaactgggacggcgag
ttcaagaaatggcaaagcaacatgcaacaggatcaagtgaaagtcacagaactggccaca
gtaaagaatttgagggaacgcatccgggctctgcagaggtggcggagagaaggaggtgtg
atgattatgggatacgagatgtaccgcaacatgtcgctggcccagacaatcaaggatccg
gagtgcaagaaggatttaaagagcctactggtgaatccaggtccagactttgtggtgtgt
gacgaggggcacatcctgcgcaacgaaagatccaacatctccaaatctatgaatgccatc
aggacccagcggagagtggtgctcactggcacacccctccaaaacaacctgaatgagtac
cactgcatggtcaatttcatcaagaggaatcttttgggctcgctgagcgagttcaggaac
cgcttcatcaaccccatacagaacggccagtgtgccgactccacgtcgagagacgtccgg
atcatgaagaagcgagcacatgtgcttcatgcaatgttggttggatgtgtgcagagaaga
gattactccgagttgactcagtttctgcctcccaaacacgagtacgtgctggaggtgagg
gttaccccacaccagtacaggctgtaccgctactacctggaccacgtcgccggtgtgggc
tccctgacgaacacagccagggggaggattggagcaaacctgttcaaggactttcaggtg
ctcagccggatttggactcatccctggtgccttcagctcaactatatcgacaaagagaac
aagagccatgttaaaaagaggaagacaatgaaagcagcagctctgcagagaaatgaaacc
actgcagctgagagaagactgagttggaataacaatgacggcagtgcagtcatgattggc
gctgcagcagcgggaggagagagagcatccatgagcgtgacgtctcagagtccggagcgc
tggttcaagaacctgctgtctgaggaggacgccaacatcatggagcactcggggaagatg
gtgctcctgtttgagatcctcagaatggctgaagacttggacgaaaaagtgcttgtgttt
agtcagtcattgatctcattgaacctgattgaggatttcctcaaggcttctcaccaagcc
agagactcatcgtctttaaaagcgcgcagctggattaaaaacgtggattactatcgtctg
gatggctccaccaatgctatgttgaggaagaaatgggcagatgagttcaataatgtctcc
aatgttcgcggccgattgtttctcatctcaacgagagccggctcactcggcatcaacctg
gttgcagccaacagggtcatcatcttcgatgcctcgtggaatccctcaaatgacatgcag
agcatttacagagtgtaccgcttcggtcaactgaatcaggtgtttgtttaccgcttcttg
gcccagggcaccatggaggagaagatctacgatcgtcaggtgaccaagcagtctttggcc
aatcgggtggtggatcagcagcagatcgagaggcactacaccttttttgaactgactgaa
ctttacacatttgagccagacatgctggacaacccgaactccaagaaaagcaaaagatcc
atctctgttatgccaaaggatattatcttggcacggctattacagacgtgtaaagaccag
atcgtggctttccatgagcacgagtctctgttggaccataaacaagaggaggagctcagt
gaggcagagcggaaagatgcctgggccgagtacgaggccgagtcttccaaccttctagca
ggcttgcaccagaaaaccttggatacaaagaccaatgaagagctattggaattgctgaac
aagagcagaagagatgtgtcggtggccttcgaggcgatgcagacgatgtctcaccctgtc
gaggtcctcagagcaaaagtgcgacaacagcatcctcagctgcccgaggacgcggttagg
gacaaagctgggactttctggttggatgagaaggagcagaaacgtagagaggccttctat
cgaggcaatcttgcacagcaacaagcactcacgctcgccattcaggacatactgaagaat
cggaggaccagtctgctgtga
DBGET
integrated database retrieval system
