Pseudoliparis swirei (Mariana hadal snailfish): 130191884
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Entry
130191884 CDS
T09868
Symbol
thoc2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013
Nucleocytoplasmic transport
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130191884 (thoc2)
09122 Translation
03013 Nucleocytoplasmic transport
130191884 (thoc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130191884 (thoc2)
03041 Spliceosome [BR:
pswi03041
]
130191884 (thoc2)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
130191884 (thoc2)
Spliceosome [BR:
pswi03041
]
Complex C
Other components
EJC/TREX
130191884 (thoc2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130191884 (thoc2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
130191884
NCBI-ProteinID:
XP_056267586
LinkDB
All DBs
Position
3:complement(9514516..9539754)
Genome browser
AA seq
1575 aa
AA seq
DB search
MATLILPGEWIKNWEKSGKHEFVRLCKELTEKTDHGSEIRDIQAALYELCWQVVQGNLKL
DFVISVLGDMMELRDDMPSILADVFSTLDLETAALEEKIKRDHYTQLVGACLFFVPEAIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNITSHVVLESIKSLIGCFNLDPNRVLDIILEVYESRSDQDEFFLSLIKCYMCEPLTLC
HILGFKFKFYQEPNEETPKSLYHIAAALLHYNLIELEDLYVHLMPVDAVIVEEHKRDITE
AKQIARKLVMVVLPSEKSEDKDKEKEKEEEKNDKQPDNQKLGLLEALLRIGDWHHAQSIM
DQMPSFYASSHKAIALALCQLVHLTVDPLYRRAGLPKGAKGCVLRPLRNKRAPRPAESFE
DLRRDTFSMICYLGPHLSHDPILFAKIVRLGKAFMKEYQSDGRSDVKDKMETLLSCFLSI
ADQVLLPSISLMDCNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLLVKVKAQTV
ERAKYIMKRLTKENVKQSGRQIGKLSHSNPTILFDYMLSQIQWYDNLIVPVVDSLKYLTS
LNYDVLAYCIIEALANPEKEKMKHDDTSISSWLQSLASLCGAVFRKYPIELAGLLQYVTN
QLKAGKSFDLLILKEVVQKMAGIEITDEMTSEQLEAMTGGEQLKAEGGYFGQIRNTKKSS
QRLKDVLLEHELALPLCLLMAQQRNGVVFLEGGEKHLKLVGHLYDQCHDTLVQFGGFLAS
NLSTEDYIKRVPSIDILCNKFHTPHDAAFFLSRPMYAHQILSKYDELKKAEKGNRQQQKV
HKYVAACELVMTPVHEAVVSLHPARVWDDLRPQFYATFWSLTMYDLAVPQTAYDREVNKL
KVQIKAIEENPEIPLNKKKKEKERCTALQEKLQEEEKKQMEHVQRVLHRLKLEKDNWLMA
RSTKNETITKFLQLCLFPRCIFSSIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSAIIY
TVASCTENESHRYGRFLCCMLETVTRWHSDRAIYEKECVNYPGFLTIFRATGFDGGNKAD
QLDYENFRHVVHKWHYMLTKASVHCLETGDYTHIRNILIVLTKILPCYPKVLNLGQALEC
RVLKICLEEKDKRPDLYALAMGYSGRLKGQKVHMVPENEFHHKEQAARSAMPANQQNGPG
STGKLSTSTIKTEEGMSEDGDRGKDKSQGTTKPVNKANSAAAKVTTSNGNGALNSTKAVK
ERDEKEKSGKEKKEKKEKTPGSTPEAKAENRREKQRDERAGKEERVAREGKDKTPKADRE
KVKAEEKSSKDDKAKAGNGEPMEPSRERDAIKESKSKEKGDRSAVAGSLKSPVPRLESAE
SERDHKRRKLDSHSSPSHSSSVKLICHLHSSLQDNSNEPKESTSKHHANYNSVTRSKSRE
REMEKKDSDNTQGRSKEKKEEKERKERKRDHLVNELETLSQETKRRKDENGMNSSKNSKS
ASPSCDSPLSAEKEKIKRPKSSSKEKAESVKPERTSSGGKKESRHDKEKSEKKEKRDSSG
GKEEKKHHKSSDKHR
NT seq
4728 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacttatcctccctggtgaatggatcaaaaactgggaaaaatcaggaaaacac
gagtttgtacgactctgcaaagaactcacagagaaaacagatcatggaagtgagattaga
gatatacaggcggccttatatgagctctgctggcaagttgtacaggggaacctgaagttg
gattttgtcatcagcgtcctcggggacatgatggaactccgagatgacatgccatcaatt
ttagcagatgtgttcagtacactagatttagagactgctgcactggaagaaaaaatcaaa
cgtgaccattacacacaactggtgggagcatgtttgttttttgttccggaagccatcctg
aaagagaggctggatccagaaacccttgaatctcttggacttataaaacaagcccatcag
ttcaatcagaagattgtaaaaatcaagactaagctattttacaagcaacagaagtttaac
ttgctaagggaggagaatgagggctacgccaaactaatcaccgagcttggccaagacctc
tcgggcaacatcacgagccatgttgtcctggagagcatcaagtccctcataggatgtttc
aacttggaccctaatcgggttttggacataatcttggaagtgtatgagagtcgatctgac
caagatgagttcttcctgtcgctcatcaagtgctacatgtgtgagccactcactctttgc
cacatccttggatttaagttcaaattctaccaggagcccaatgaggaaacccccaagtca
ctttaccacattgctgctgctctgcttcactataacctgattgagctggaagatctctac
gtacatcttatgccagtagatgccgtcatcgtagaggaacacaaacgagacatcacagag
gccaagcagattgcccgcaagctggtcatggttgtcttgccctcagagaaaagtgaagac
aaagacaaggagaaagaaaaagaggaggaaaagaatgataagcaacctgataaccagaag
cttggtctgttggaagcgctgcttagaattggagactggcaccatgcccagagtattatg
gaccagatgccgtccttctatgcttcttctcacaaagccattgcgctggcactctgccag
cttgtgcatctgactgtggaccctctttacagaagggctggcctcccgaaaggggcaaaa
ggatgcgtcttgcgtccactgaggaacaagcgtgcccctcgccctgcagagagcttcgag
gacctacgcagggacacatttagcatgatctgctacctcggccctcatctctcccacgac
ccaattctttttgccaagattgtacgtctgggcaaggccttcatgaaagagtaccaaagt
gatggcagatctgatgtcaaagacaaaatggaaacacttttgagttgtttcctgagcatt
gcagaccaggtgctactcccttctatctctctgatggactgtaatgcttgcatgtctgag
gaactgtggggcctcttcaaactctttccctaccagcacaggtaccgattatatggacag
tggaagaatgagacatatacaagccatccactgttggtcaaagtcaaagctcaaactgta
gaaagggccaaatacattatgaaacggttgaccaaagagaatgtgaaacaatctggaagg
cagataggcaaactgagccacagcaatcccactatcctctttgattatatgctttctcag
atccaatggtacgacaaccttatcgttccggtggtggactccttgaaatacctcacatcc
ctcaactatgatgtattggcctattgcatcattgaggctctggccaatcccgagaaggag
aagatgaagcatgacgacaccagcatctcctcgtggcttcagagcctggcaagtctgtgt
ggagccgtgttcagaaaatacccaattgagttggctggccttctccaatatgtcaccaat
caactaaaagcagggaagagttttgacctgttgatcctaaaagaggtggtgcagaaaatg
gctggcattgagatcacagatgagatgacctcagagcagttagaggccatgaccggaggg
gagcaactcaaagctgagggtggctacttcggccagatcaggaacactaagaagtcgtca
cagcgtctgaaggatgtgctgctggagcacgagttggccttgcctctgtgtttactcatg
gcccagcaaagaaatggtgttgttttcttagagggtggagagaaacacctcaaacttgtt
ggccacctgtatgaccagtgtcatgacaccttggtgcagtttggtggttttctggcctcc
aacctgagcaccgaggactacatcaagcgcgttccctccattgacatcctttgtaacaag
tttcacacgccacatgacgctgccttctttctgtctcggccaatgtacgcccatcagatt
ttgtctaagtacgatgagttgaagaaagcagagaaaggcaaccggcagcagcagaaggtt
cacaagtacgtggcagcctgtgaactagtgatgacgccagtgcacgaggcagtggtgtca
ctccatccagccagggtctgggacgacctccgcccccagttctacgctaccttctggtcc
cttaccatgtacgacctggctgttccacaaactgcctacgatcgcgaggtcaacaagctc
aaggtccagatcaaggccatcgaggaaaatccagagatacccttgaataaaaaaaagaag
gaaaaggagcgctgcactgccctgcaagaaaaactgcaggaggaggagaagaaacagatg
gagcacgtccaaagggttctgcaccgcctcaaactggagaaagacaactggttgatggcc
agatctacaaagaacgagaccatcacaaagtttctgcagctctgtctgttccctcgctgc
atcttctcgtccatcgacgccgtgtactgtgcacgctttgtcgagctggtccaccagcag
aagacgcccaacttctgcaccctcctgtgctacgacagggtgttttccgccatcatctac
actgtagccagctgtaccgaaaacgagtctcaccgctacggacgcttcctctgctgcatg
ctggagaccgtcacccgttggcacagcgatcgtgcaatctatgagaaggagtgcgtcaat
taccccggcttcctgaccatcttcagagccacgggcttcgatggcggaaacaaagcagat
cagctggattatgagaactttaggcatgtggtgcacaaatggcactacatgctgactaaa
gcttcagttcactgcttggagacaggagattatacccacatccggaatattctcatcgtg
ctcacgaagatcctgccctgctaccccaaagtcctgaatctgggccaagcgctagagtgt
cgtgtcctcaagatctgcctcgaggagaaggacaagaggccagacctctatgccttagca
atgggttattcaggtcgtttgaagggccagaaggtgcacatggtcccagagaatgagttt
caccacaaggagcaggcagcgcgcagtgccatgcctgccaatcaacagaacggccccggc
agcacaggcaagctttccaccagcacaatcaagaccgaggaggggatgtccgaagatggc
gatcggggcaaggataaatctcaggggaccacaaagccagtgaacaaagccaacagtgca
gcggccaaagtgaccacgagcaacgggaacggtgctctcaacagcaccaaagccgtgaaa
gagcgggacgaaaaggagaagagcgggaaggaaaaaaaagagaaaaaggaaaagacacca
ggcagcactcctgaggcaaaggcagagaaccgccgggagaagcagagagacgagagagca
ggaaaggaggaacgggtggctcgcgagggtaaggacaagacccccaaggcagacagggag
aaagtaaaggccgaggaaaagagcagcaaagacgacaaggccaaagccggcaacggggag
cccatggagccatccagggagcgcgatgccatcaaggagtccaagagcaaggagaaagga
gacaggagtgcagtggctgggtccctaaagtcaccagttcccagattggagtcagccgaa
tctgagagggatcacaaaagacgaaagctcgacagtcactcttctccgtcccactcctcg
tctgttaagctcatctgtcatctccattcatccctacaggacaatagcaacgaacccaag
gagtccacatccaagcaccacgccaactacaattcagttacccggtccaagagcagagag
agggagatggagaagaaagattcagacaacacacaaggccgatccaaagagaagaaggaa
gaaaaggaacggaaagagaggaaaagagaccaccttgtcaatgagctggagacgttgagt
caagagaccaaacgtaggaaggatgagaatggaatgaattcctccaaaaacagcaagagt
gcaagtccttcctgcgactccccgctctcagctgagaaagagaagatcaagcgacccaaa
tcctccagtaaagagaaggcggagtcggtgaaacctgagcggacttcctctggaggcaaa
aaggagtccagacatgacaaagagaaatctgaaaagaaggagaagagggacagcagcgga
ggaaaagaagagaaaaagcatcataaatcctctgacaagcacagataa
DBGET
integrated database retrieval system
