Pseudoliparis swirei (Mariana hadal snailfish): 130191914
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Entry
130191914 CDS
T09868
Symbol
hmgb1a
Name
(RefSeq) high mobility group protein B1a
KO
K10802
high mobility group protein B1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03410
Base excision repair
pswi04140
Autophagy - animal
pswi04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130191914 (hmgb1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130191914 (hmgb1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130191914 (hmgb1a)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130191914 (hmgb1a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130191914 (hmgb1a)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
130191914 (hmgb1a)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
130191914 (hmgb1a)
MMR (mismatch excision repair)
Other MMR factors
130191914 (hmgb1a)
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
130191914 (hmgb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
HMG_box_5
SSP160
New_glue
Motif
Other DBs
NCBI-GeneID:
130191914
NCBI-ProteinID:
XP_056267631
LinkDB
All DBs
Position
3:6422259..6426401
Genome browser
AA seq
223 aa
AA seq
DB search
MVREPGKPRGKMSSYAYFVQICRQEHKKKHPEVSVNFSEFSKKCSERWKTMSLKEKGKFE
DLAKQDKVRYEREMMSYVPPRGSKKKRFKDPNAPKRPSSAFFIFCAEYRQKVKGETPGLT
IGDVAKRLGEMWNGTASEDKQPFEKKAAKLKEKYEKDVAAYRAKTKPGAGGAAAAAATTT
TATTTTATATTATAAKAPVKVEKKMENDDDDDDDDDFDDDDDE
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atggtgagagagccaggaaagccgaggggcaagatgtcctcctatgcatattttgtccag
atctgtcggcaggagcacaagaagaaacaccccgaagtatctgttaacttttcggagttc
tccaaaaagtgctcagagcgatggaagacaatgtctctgaaggagaagggcaaatttgaa
gaccttgccaaacaggacaaggtccgctatgagagggagatgatgagctacgtcccaccc
aggggatccaagaagaagaggttcaaggaccccaacgctcccaagagaccctcatctgcc
ttcttcatcttttgcgcagagtatcgccagaaggtgaaaggcgagactcccggtctcacc
atcggagacgtggccaagaggctgggtgagatgtggaacggcaccgcttcagaggacaag
cagccctttgagaagaaggcggcgaaactgaaggagaagtacgagaaggacgtcgcagcg
taccgcgccaagaccaaaccaggcgccggcggggcggcagcagcagcagcgacaacaaca
acagcgacaacaacaacagcgacagcaacgacagcaacagcagcaaaagctccggtcaag
gtggagaagaagatggagaacgacgacgacgatgatgatgacgatgactttgatgatgat
gatgacgagtag
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integrated database retrieval system
