Pseudoliparis swirei (Mariana hadal snailfish): 130191955
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Entry
130191955 CDS
T09868
Symbol
scaf4a
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130191955 (scaf4a)
03041 Spliceosome [BR:
pswi03041
]
130191955 (scaf4a)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130191955 (scaf4a)
Spliceosome [BR:
pswi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
130191955 (scaf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Collagen
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
130191955
NCBI-ProteinID:
XP_056267705
LinkDB
All DBs
Position
3:complement(5189599..5201555)
Genome browser
AA seq
1397 aa
AA seq
DB search
MDAVNAFNHELFSLIDAKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKCEYKI
AGLYVVDSIVRQSRHQFGSDKDVFGPRFTKNITGTFENLCLCPFEDRCKIVRVLNLWQKN
GVFKIEIIQPLLDMTAGSGSAAAPYAGSDDPGSPSPSAKEPVTGVTANSTITSSAQLQNS
DAFAAVAQLFQSTQGQQLQQMLQNFQQQPEKPDTNTQPPVYTSQTQAQHVATSLARVDPQ
PPLLTQAAQAAQAAQAAQAAQAAQAAQQKTAFDKVEKLLDRFDYDDEPEVGEETKKDESH
ASFMQQPPSFQQHFKPPMMNMLQDRSQQVPLPPNGQLQAYGLQPGQSFPVMMPPLGHALP
GQPPPGSTGPPGFPGLYPLHNAAQQQQDSSMDMDHSSTRDGRHGRRSHSGSRSPKRKRSR
SNSRTRRSRHRRSRSRSRDRRHHSPRARSLERREREKERERRQKGLPAPKTETLSICSTT
LWVGQLDKRTHQQDVACLLEEFGEIDSINMIPPRGCAYIVMIHRQDAFKALQKLSRGSHK
VNQKSIKIAWALNKGIKADFKPFWDVDLGVTYIPWSKLREAQLEELKEGGVLDADTLSPE
WSGLRNTLGLQEELTHNGRSELQQSEETHALPLNAVAAPPAQVPPMMGVGSLQPPGFPGP
MGMPPPSFPPGIPPPPFIRPGFNPMQMPPGFPPPGAMPLGPPPLSKGGVEDSPNDDILDG
PNIFNKQMGPMGNQLIRPPGTLPGAPPGNLQPPPRGLLGARPGMMPLQRPPVPPPSHMQR
FPPPLGPRPPHPNMPPMLPQMIARGPHPQMMHHEPAPLKGGFGMMSPHNMRAPFPPHGQG
PPPHGPPHPGPPPFIRPGGPRGLDGPRGSEGPRGLEGPRGLEGPRSLDGPRGLEGPRSSE
GPRGLEGPRSLDGHRGLEGPRGSEGPRGLEGPRSLDGPRGLEGPRGSEGPRGLEGPRSLD
GPRGLEGPRGSEGPRNLDGPRGLEGPRNLDGPRGLEGPRNLDGPRGSEGPRGLEGPRGLE
GPRNLDGPRGSEGPRNLDGPRGLEGPRNLDGPRGLEGPRNLDGPRGSEGPRGLEGPRNLD
GPRGSEGPRGLEGPRNLDGPRGLDGPRSLDGSRGLEGPRGLEGPEEMEGRPFRGDRPGFR
DREPGRDWDRDRDRERDRGFGGGRRPFGDGGRGGGGDRMDGRDRLGGWQEDGGGHRGGGW
ERDRDRDRDRDRDRDRDRDNRRDWKERRNSLDGDRERGRSADRDRDRGRGADGDRDRGRG
ADGDRDRGRGEGGERAKAEGGGRERGKGAEGKEGDRPRRSERRERTTRWDRDDRLAELEN
VGTLRTPDATEQIPVTPVATATETSQEPSVEASEKKADSELLAPSPEVTPAAEEPTPSVP
SPSAQSEPTETKPEAAS
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgcctttaaccacgagttattctcgttgatagacgccaagccccca
atctctcgggcaaagatgatctccatcaccaaatcggccatcaaagctatgaaactttac
aaacatgttgtccagattgtggagaagtttatcaaaaagtgtaagtgtgagtacaagata
gccggcctgtatgtggtggattccattgttcggcagtccagacaccagtttggatcagac
aaggacgtgtttggcccacgtttcaccaaaaatattacaggaaccttcgagaacctctgc
ctttgccccttcgaggacaggtgtaagatcgtgcgggtgttgaacctgtggcagaagaat
ggcgtgttcaagattgagattattcagcccctcctggacatgacagctggctctggcagt
gctgctgcgccctacgcgggctcagatgacccaggttctccctcaccatcagccaaagag
ccagttactggggtaacggcaaactccaccattacatccagcgcgcagcttcaaaactct
gatgcctttgctgctgtggcgcagcttttccagtccacgcagggccagcagcttcaacag
atgctccaaaacttccagcagcagcctgagaagcctgacaccaacactcagcctccagtc
tatacgagtcaaacacaggcccaacacgttgccactagcctggccagggtcgacccgcaa
ccgcctctgctcacccaagcagcccaagcggcccaagccgcccaagccgcccaagcggcc
caagccgcccaagccgcccagcagaagacagcctttgataaggtggaaaaattgctggac
cgttttgactatgatgatgaaccagaagttggagaagaaacaaagaaggatgaatcgcat
gcctcttttatgcagcagcctccatccttccaacagcactttaaaccaccaatgatgaac
atgttgcaagaccgctcacaacaggtccctctgcctcctaatggccagctccaggcctat
ggtttacagccaggacaaagcttcccagttatgatgcctcctttggggcatgctttgcca
gggcagcccccccctggttctactgggcctccaggctttccggggctataccctctccac
aatgcggcccagcaacaacaggattcgtcaatggatatggaccattcatcgacaagggat
ggcagacacggtcgacgatcgcactcgggctccaggtctccaaagcggaagaggtcacgg
tctaattcccgcacacggcgatccaggcatcggcgatcccgctcccgctccagagaccgc
cgtcaccattccccacgcgctcgctcgctggagcgcagggagagggagaaggagagagag
cggcgacagaaaggccttccagcacccaagaccgagacattaagcatttgcagtacaact
ctctgggtgggccagttggacaagaggacacaccagcaagatgtcgcctgtttactggaa
gagtttggggagatagattccatcaatatgatccctccgcgtggctgtgcctatattgtc
atgatacacaggcaagatgccttcaaggctctgcagaagctcagtcgaggatctcacaaa
gtgaatcagaagtccatcaagattgcgtgggctttaaacaagggcataaaggctgatttc
aaaccgttctgggacgtggatctcggcgtcacctacatcccgtggtctaaactcagagag
gctcagttggaggagctcaaagaaggaggtgtcctggatgcagacaccttatcaccagag
tggagtggattgaggaatactctcggcctccaggaggaactcacccacaacggccggtca
gagctgcagcagtcagaggagacacacgcgttacctctaaatgctgtggctgctcctcct
gcacaggttcctccaatgatgggtgtgggatctctccagcctccgggttttcctggtccc
atgggcatgcctccgccttccttccccccaggcatcccccctcctcctttcatccgacct
ggcttcaaccccatgcagatgcctccaggtttccctcccccaggtgccatgcctcttgga
ccaccacctctttccaaaggtggcgtggaagactcgccgaatgacgacatcctggacggt
cccaacatcttcaacaaacagatgggacccatgggtaaccagctcataagacccccaggt
accctccctggtgctcctcccggaaacctccagccccctcctcgtggtctgcttggcgcg
cggcccggtatgatgccactccagcgtcctccggttcccccgccatcacacatgcagcgt
ttccctccacccctcgggccgagaccccctcaccccaacatgccacccatgctcccacag
atgattgctagaggcccgcaccctcagatgatgcaccatgagcccgctccacttaaagga
ggcttcggaatgatgtctccccacaatatgagggctcctttccctccgcatgggcagggt
cctcctcctcacggtcctcctcatccgggtcctcctccttttattagaccaggggggcct
cgtggcctagacgggcctcgtggctcggaggggcctcgtggcctggaggggcctcgtggc
ctggaggggcctcgtagcttggacgggcctcgtggtctagaggggcctcgtagctcggag
gggcctcgtggtctagaggggcctcgtagcctggacgggcatcgtggtctagaggggcct
cgtggctcggaggggcctcgtggtctagaggggcctcgtagcctggacgggcctcgtggt
ctagaggggcctcgtggctcggaggggcctcgtggcctggaggggcctcgtagcctggac
gggcctcgtggtctagaggggcctcgtggctcggaggggcctcgtaacctggacgggcct
cgtggcttggaggggcctcgtaacctggacgggcctcgtggcttggaggggcctcgtaac
ctggacgggcctcgtggctcggaggggcctcgtggcctggaggggcctcgtggtctagag
gggcctcgtaacctggacgggcctcgtggctcggaggggcctcgtaacctggacgggcct
cgtggcctggaggggcctcgtaacctggacgggcctcgtggcttggaggggcctcgtaac
ctggacgggcctcgtggctcggaggggcctcgtggtctagaggggcctcgtaacctggac
gggcctcgtggctcggaggggcctcgtggcctggaggggcctcgtaacctggacgggcct
cgtggcctcgacgggcctcgtagcctggacgggtctcgtggcctggaggggcctcgtggc
ctggaggggccagaagaaatggaaggccgaccattcaggggagacaggcctggattcagg
gacagagagccaggcagggactgggatcgagacagggatagagagagggatcgaggtttt
ggaggtggaaggcgtccatttggtgatggagggaggggaggaggtggagatagaatggat
ggcagggaccgactcggaggatggcaagaagatggaggaggtcaccggggaggaggatgg
gagagagacagagatcgggacagagatcgggacagagatcgagatagagatcgagacaac
aggcgggactggaaggaaaggcgaaacagcttggatggcgacagggagcgggggaggagt
gctgatagggatagggatcgggggaggggtgctgatggggatagggatcgggggaggggt
gctgatggggatagggatcgggggaggggtgagggaggagaaagggcaaaggcagaagga
gggggtcgagaaagagggaaaggagctgaaggaaaagaaggggacaggccgaggcggtca
gagaggcgagagaggaccacgcgttgggacagggatgatcgcttggctgaactggaaaac
gtaggaacattgcggacccctgacgccacggagcaaattcccgtgactcccgttgcaacg
gctacggaaaccagtcaagaaccaagtgtagaagcttctgaaaagaaggccgattctgaa
ctcttagctccgtcaccagaggtaacccccgctgcagaggagccgacgccctcggtgccc
tcaccctcagctcaaagtgagcccacagaaacaaaaccggaagcagcgtcatag
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