Pseudoliparis swirei (Mariana hadal snailfish): 130192004
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Entry
130192004 CDS
T09868
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
130192004 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pswi01009
]
130192004 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130192004 (pcdh1a)
Protein phosphatases and associated proteins [BR:
pswi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130192004 (pcdh1a)
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Protocadherins
130192004 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
He_PIG
Fibulin_C
KIAA0319_N
Motif
Other DBs
NCBI-GeneID:
130192004
NCBI-ProteinID:
XP_056267792
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Position
3:10633123..10709477
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AA seq
1190 aa
AA seq
DB search
MELNLQVVLFWVLVLHCGSAEGSILYRVQEEQPPNTLIGSLAADQGLPDSGHLYKLEVGA
PYLRVDGKTGDIFTTEIPIDRETLRDCRSITKGKPCYLEFEVSVTDLIQNQSPRLIEGRI
EVQDINDNTPQFPSSVLTISVPENTNMGALFSIPLATDRDSERNGVADYALIAGPDAATL
FGLQVAEDRGGKLPQLIVLGNLDREVKDSYDLTIKAVDGGNPQRDSSALLRVVVTDANDN
PPKFERATYEAEVLENSPVGYSVLQVKANDSDMGPNGEIEYTIHQAVDPVPKLLRIDRST
GIIYVKGSVDREEISSLSFYVVARDKGPQPKSSKTFITIEVIDQNDNAPAVEIRGIGLVT
HIEGVANISEDMPVGTAVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASDSSSDNKRKY
FLQTTTPLDYERIRDYRVEIVAVDSGNPALSSSNSLKVQVIDVNDNSPIFSPTLFEVDFA
EENQPGERVLDVVASDADIGTNAELLYSIVADSSIKGLFEIDPNTGEVRARSPLDREHKE
RYEFRVTAADKGSPVHKGTATVVINVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTV
LDVDKGDNAHIHLSVEPDGGKFVVKNGTGTILSSISFDREKESSYTFRLKAVDGGEPPRS
SYVGITINVLDENDNDPVVTKPSNSSFRRLSPLASPDSHVEIVEAEDLDSGPNAELVFSM
AGGNPYQLFRISPSTGEITLAKEMTRKHGGLHRLVVRVSDSGKPARHAIALIHIYVNETI
SNVSLVEALVGHSLYTPLDRDIAGDPDNGLAAQRSNILFGSLAGLAGVVMLILVVVFVRH
RIQRETKSGYQAGKKETKDLYAPKQVPKNAKGKRGRKGKPQKSPKPLGEDEEVSLQKSLK
FNLDGVNDSPRIHLPLTYSPGSPDIGRHYRSNSPLPSIQLQAQSPSASQKHQGVQDLPAT
NTFVGTGGDDNSTGSDQYSDYSYKTSQLKYSNKQQPHRRVTFSTANPVQDLQDASQHSYY
DSGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGETEHPENDIRSLPDVAMTGN
CTTECCELGHSDACWMPGHPSPIRKTRNPPQLSTFVPYQERGSLGRLANGSARPGGEEHR
SRLPPSRSAYSNSGHDASQDCPLEEMPLSVASEFPPTSPSAHTPKREIYL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaactaaacttacaggtagtgctgttctgggtcctggtgctgcactgtggctctgct
gaaggcagtatcctgtaccgggtgcaggaggagcagcctcccaacactctaattggtagc
ctggcagcagaccagggcctgccagactctggtcacctctacaagctggaggtgggtgcc
ccttaccttcgtgtcgatggaaagacgggagacattttcaccacagagattcccatagac
agggagactctgagggactgtcgatccattactaagggtaagccctgctacctggaattt
gaagtatcggtgacggatctgatacagaaccagagcccacgactcattgaaggacgcatt
gaggtacaggacatcaatgacaacaccccacaatttccctcctctgtgctcaccatctct
gtccctgagaatacgaacatgggggcgctgttctccatacctctagctacagacagggac
tcggaaaggaatggagtggcggattatgctctgattgccgggccagacgcagcaacccta
tttggtttgcaggtggctgaagacagggggggtaagctcccacagctcattgtcctgggc
aacctagatcgtgaggtaaaggattcctatgacctcaccatcaaagcagtggacggagga
aaccctcagcgcgacagcagtgctctgctgagagtggtagtcaccgatgccaatgacaac
cctccaaagtttgagagggccacctacgaggcagaagtgttggaaaatagtccagtgggg
tactctgtattacaggtcaaagcaaatgactctgacatgggcccaaacggagaaattgag
tacaccattcaccaagcagtagacccagtgccgaaactcttacgcattgatcgctccact
ggcatcatctatgtcaaaggatccgtggacagggaagaaatcagcagcttgtccttctac
gtggtggcgagggacaagggtcctcaaccaaaaagctccaagacatttataactatagag
gtgattgaccaaaatgacaacgctccagcggtggagattcgcggcattggtcttgtgaca
cacattgaaggagtggctaacatttcagaggacatgccggttggaacagctgttgctttg
gtgcaagtgtctgacagggatgagggagagaatgccgtggtcacatgtgtggtcgcagga
gatgtgcccttccagctccgccctgccagcgactcatccagtgacaacaagaggaagtat
tttctacagaccaccactcccctcgactacgaaaggattagggattaccgagtggagatt
gtggctgtggattccggaaatccggcactgtctagttcaaattctctcaaggtgcaggtg
attgatgtgaacgacaactctccaatcttctccccaaccttgtttgaggtagattttgcc
gaagaaaaccaaccaggggagagggttttggatgttgtagcttcggatgctgacattggc
accaacgcggaactcctctatagtattgtggcagactcatccatcaaaggtctgtttgag
attgatccaaatacgggcgaagtaagagcccgaagcccacttgaccgtgagcataaagaa
cgctatgagttccgggtcaccgcagcagataaaggttcacctgttcacaaaggaacagca
actgttgtgataaatgtacttgaccgcaatgacaatgaccccaagttcatgcttagtggc
tacagcttttcagttttagaaaacatgcctcccctcagtccagttggcatggtgacggtc
ctggatgtggacaaaggggataatgctcatattcacctctctgtagagcctgatggaggg
aagtttgttgttaaaaatggaacaggcactattctttcaagcatctcatttgacagggag
aaagaaagcagctatacattccgtctaaaagcagtggatggaggagagccacctcgatct
tcatatgtgggcatcaccatcaatgtactggatgaaaacgacaatgaccctgtagtcacc
aagccctccaattcttctttcaggcgcttgtcacctctagcctccccagacagccatgtt
gagatagtggaagcggaagacctggatagtgggcctaatgcagagctggtcttcagcatg
gctggtggaaacccttaccagttatttcgcatttccccctccactggggagatcactctc
gcaaaagagatgactcgaaaacatggcggactacatcgtcttgtcgtgcgagtgagtgac
agcgggaagcctgcccgtcatgcaattgccctaatccacatctatgtcaatgaaactatt
tcaaatgtcagcttggtggaggccctagttggacacagtctttacactccactggacagg
gacattgctggtgatcctgacaatggtttggctgcacagcgtagtaacattttgtttgga
agccttgctggtttggcaggtgttgtcatgctgatcttggtggtggtatttgttcgacac
cgcatccagagagaaacgaagagtgggtatcaggctggcaagaaggaaacaaaggactta
tatgcacccaaacaggtgccaaagaatgccaaaggcaaacgaggaaggaaaggaaaaccc
caaaagtcccccaaaccactcggggaagatgaggaagtcagccttcagaagagtctaaag
ttcaaccttgatggagtcaatgatagccctaggatacacttgcccttaacatattcacca
ggaagcccagatataggcaggcactaccgctccaactcccccttaccctccatccagctg
caggcccaatccccttcagcttcacagaagcatcaaggtgtccaggaccttcctgctacc
aacacctttgtaggaacggggggagatgacaactctactggctcagaccagtattcagat
tacagctacaagaccagtcaactgaagtacagcaacaaacagcaaccccatcggcgagtg
actttctccaccgccaaccctgtgcaggacctgcaggacgcctctcagcacagctactat
gacagcggcttggaggaatcggagactcccagcagtaaatcatcttctggtcctcgcatt
ggacccctgaccctgcctgaggaccactacgagaggaccactccagatggcagcattgga
gagaccgagcaccctgaaaatgatatccgctccctccctgatgtggcaatgaccggaaac
tgtacaaccgagtgctgcgaattgggccactcggacgcctgctggatgcccgggcacccc
tcccccatacgcaagaccaggaaccccccgcaactctccaccttcgtgccttaccaggag
agagggagcctgggtcgcctggctaacgggagcgccaggccgggtggcgaggagcaccgg
tcgcgccttccgccctcccgcagtgcctattccaacagcggtcatgacgccagtcaggac
tgccccctagaggagatgcccctgagcgtagcctcggagttcccgcccacctccccttca
gcccacactccaaaaagagaaatctacctgtga
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