Pseudoliparis swirei (Mariana hadal snailfish): 130192174
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Entry
130192174 CDS
T09868
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130192174 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130192174 (smarcc1b)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130192174 (smarcc1b)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130192174 (smarcc1b)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130192174 (smarcc1b)
PBAF complex
130192174 (smarcc1b)
GBAF(ncBAF) complex
130192174 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
DUF919
Motif
Other DBs
NCBI-GeneID:
130192174
NCBI-ProteinID:
XP_056267930
LinkDB
All DBs
Position
1:complement(11267078..11274842)
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AA seq
997 aa
AA seq
DB search
MATMSGGTNLGIPGTSHASSGTAAHRKKDSSPSARFWESPDTLAQLEVVRQWIGKHYKKY
VLVDAPSCPALAGVTLQLLHFQEDAFGRQATSPAFTKLPAQCFLDLRPAGGLCHILGSAY
KFKAEQGWRRFDLQNPSRNERNVEMFGAIERALIQNNCMSLPVVYVDSKLDQELASRLTD
IITKHKGTLTEDRTLASHHIYTSLATKEEDDWMRPVMRKDKHVLVHWGMHPDSYDSWLSS
SDVEREVEEKPHSEKPWRVHAGWVLDTDVFNEWMNEEDYCVDERNVPIVFRQRIHLRDDQ
DSKITPSKKRRRSPSPPSSEVRKKGKKGRRRGPQEEGSEEDLTKDMEDPTSVPNMEEVVL
PKNVNLKKDSENTPVKGGTMADLDEQEDDFPGRDDDEGRGDIPRLSEGEDTITEQSHHII
IPSYTSWFNYNIIHAIEKRALPEFFNGKNKSKSPEIFLAYRNFMIDTYRLNPQEYLSSTS
CRRNLTGDVCAVMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQ
HKPLQVKHTHTHTRNTWLQLEQMYRKHTFELSEMPPDKLCRPLSLSQVSASQHMLYFSEK
SKEKPSDCQNFGLRSDIYTKKHPKTKGANAAWEWTEQETLLLLEALEVYRDDWNKVSEHV
GSRTQDECILHFLRLPIEDPYLEDSSASLGPLAFQPVPFNQSENPVMSTVAFLASVVDPR
VASSAAKAALEEFSKVQEESVDKISEMSNQPDKTESMDAEIMETKSASNQVSLMGDELTV
EPIKAKVEGELVKRENDESILAEERDGRGDDDESLGRGDVDEARGMEQDLVEGRVATAAA
AALASAATKAKHLAAVEERKVKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQ
RQQLLTERQTFHTEQLKQAEMKARQQREQQGQPGFTMQQSALPTPSGQPMPNRMMPVGGN
AQVMAPRHPGAPNGMYPSSQPDGKAPAQPGPPPSTHS
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtccggaggaacaaacctcggcatccccgggacaagccacgccagctcc
ggaacagccgcacatcggaaaaaggacagcagcccgtccgctaggttctgggagagcccg
gatactttagcccagctggaggtggtgcgacagtggatcgggaagcactacaaaaagtac
gtgctggtggacgctccgtcgtgtccggctctggccggtgtgaccctccagcttctccac
ttccaggaggatgccttcggcagacaagcgaccagtcctgctttcaccaaactgcccgca
cagtgttttctagacctgcggccagcgggtggactctgccacattcttggcagtgcctat
aagtttaaggcagagcaaggctggcggaggtttgacttgcagaatccatcaagaaatgaa
agaaatgttgagatgtttggtgcaattgaaagagccctaatccagaacaactgcatgtca
ctccctgtggtatatgtggactctaaactggatcaggagctggctagcagacttacggat
attatcaccaaacacaagggtactctgactgaggaccgaacgctcgccagtcaccacatc
tacacctcacttgctactaaagaggaagatgattggatgcgtcctgtcatgcggaaagac
aaacatgtcttggtacactggggcatgcaccctgacagttatgacagttggctgtcctca
agtgatgttgaacgagaggttgaagagaaaccacattcagaaaagccgtggcgggtccat
gctggctgggttctcgacacagatgttttcaacgagtggatgaacgaagaagactattgt
gtcgatgagaggaatgtaccaatcgttttccgccagcgcattcacctcagagacgaccag
gactctaaaatcaccccctccaaaaagagaagacgctccccctctcctccctcctctgaa
gtgagaaagaaaggaaagaaggggagaaggcgcggaccacaagaggaagggtcagaggag
gacttgaccaaagacatggaggaccctacctctgttcctaacatggaggaggttgtacta
cccaagaatgtcaacctgaagaaggacagtgagaatactcctgtcaaaggagggactatg
gctgacctggatgaacaggaggatgatttcccaggaagggatgatgacgaggggagaggg
gatattccccgcctgtcagagggagaggacaccatcacagaacaatctcatcatatcatc
ataccaagctacacttcttggttcaattacaacatcattcatgcaatagagaaacgtgca
ttgcctgaattcttcaatggaaagaataagtccaaatcgccagaaatcttcctggcatac
cgtaacttcatgatcgacacataccggctcaacccccaggaatacctcagttcaacgtcc
tgcagacgcaacctcactggagacgtctgtgctgtcatgagggttcatgcctttttggag
cagtggggtttgattaactaccaggtggatgcagaaagcaggcctctccccatgggaccc
ccacccacccctcatttcaatgtactggctgatacaccgtccgggctggcccccctacaa
cacaaaccactgcaggtaaaacacacacacacacacacacggaatacatggctacagctc
gaacagatgtatcggaaacacacatttgaattatctgaaatgcctcctgataaactctgt
cgcccactttcactctcgcaggtgtcggcctcgcagcacatgttatatttctcggagaag
agcaaagaaaagccttcagactgccagaactttggtctgcgctccgacatctacaccaag
aaacacccgaagactaaaggtgcaaatgcagcatgggaatggaccgagcaagagacgctt
ttgctattagaggccttagaggtctacagagatgactggaacaaagtatccgagcatgtg
ggctccagaacacaggacgagtgtatcctccacttccttcgtctgccaatagaagacccg
tatctcgaagactcctcggcctcccttggcccactggcgttccagcctgtgcctttcaat
caatcagaaaaccccgtcatgagcactgtggccttcctggcctccgtggtggacccacgg
gtggcttcttccgccgctaaggccgcactggaggagttttccaaagtgcaggaggagtca
gtggataagatctctgaaatgtccaaccagcctgacaaaacagagtcgatggatgcagaa
ataatggaaacaaagtcggcctccaatcaggtctctttaatgggcgatgagctcacggtg
gaacccattaaggctaaagtagagggagaactagttaaaagggaaaatgacgaaagtatt
cttgcagaggagagagatggaaggggagatgacgacgagagtctaggtcgcggagatgtg
gatgaggcaagagggatggagcaagatctggtggagggcagagttgccacggcagcagca
gctgctctggcctcagctgccacaaaggccaagcacttggcagcagtagaagagaggaag
gtaaagtccctggtggctctgctggtggagacccagatgaagaagctggagatcaaactg
aggcactttgaggagctggagaccatcatggaccgtgagaaagaggctctagagcaacag
cggcagcagctcctgacagagagacagacgttccacacggagcagctgaaacaggcagag
atgaaggctcgccagcagagggagcagcaggggcagccgggattcacaatgcagcaatca
gccttgcctactccttcaggccagcccatgcccaaccggatgatgcctgttggaggaaac
gcccaggtgatggcccctcgacacccgggagctcccaatggcatgtacccgtcctcgcag
cctgatgggaaagcaccagctcagccgggtcctccaccgtccactcacagctga
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integrated database retrieval system
