Pseudoliparis swirei (Mariana hadal snailfish): 130192196
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Entry
130192196 CDS
T09868
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130192196 (chd9)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
130192196 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
Myb_DNA-bind_7
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
130192196
NCBI-ProteinID:
XP_056267952
LinkDB
All DBs
Position
4:3188283..3277020
Genome browser
AA seq
2922 aa
AA seq
DB search
MDFFSDPALFVGGLDGLDEDVFPSAPSLVDELNLAADFEPLQVVAAEPLDPGKHPDTAPP
AAAAPSYGQQMGRYVGTKAQAPMGPPFAGPGVGGGGGGGTVADRHGQYHNAAVSQVPQSN
GLFCSSSPMWGDQDQNGNMYHPLSQQQLCQQQQLHDRQLHVRQQQQQQQQQQQQQCRMQQ
HHQQLLNQQHINTQAMSLQQHHDFSFHQRAPSQQQLHHPQHRGPRFHPSKSYLESGTCLQ
PPPPPQGGYQLTRGGQTFSGSGSEDPNLPFPMHSAPMGHPLPTCSVGSATAYQAARYPAY
PGEPEIPGLSQQSAASGATPAAAAAAPLTSTVPELPGSVCQFPSAAAMRNQADECAFRAP
RRSGGTKSSEMFGESMNCFPSAASRRPPAERPPSRGAADTNGYRAPGDGLLPSKAGGGLE
GLEPPDLLPDLLPQLEAALSQRGESDCSWVDSSKAPPVEHAQEQPRKNANGPGSQVRVLS
PPVKSSSSSSSSSSSSPSSSSSSSETKRTPRRTQHQMEVATQDKQEKANRIISEAIAKAR
QRGEKNIPRVMSPESFPSSSSQYKHRKREHKGKGKARTKGKGCRKACIIPSSKPNKKTKI
GKIVIKIGKKKKRKPASSEESDDDPPPRHAARDDDFKRRSNRQVKRKKYAEELDARLSDD
EVKAIGKAKKSGTAASKQSAVQLFVENPSEEDAAVVDKIMSSRIVKTEVSPGVVVEGEEF
FVKYKNYSYLHCEWATEQQLVKDKRIQQKIKRFKLKQAQRALFFADMEEDPFNPDYVEVD
RVLEVSYCEDKDTGEEVVYYLVKWSSLAYEDSTWELKDDVDQSKIEEFEQLQAVKPVTRR
TERPPANLWKKRDQSREYRNGNSLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSI
TFLQEILRVGIKGPFLIIAPLSTIANWEREFRSWTYHNVIVYHGSMVSRQMLQQYEMYFR
DTQGRVVRGNYRFQALITTYEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLM
NLKHKVLLTGTPLQNTVEELFSLLHFLEPARFPSENPFMQEFGDLKTEEQVQKLQAILKP
MMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFTFLAKGAGPANMPNLVNT
MMELRKCCNHPYLIKGAEEKILEDFREVYSPTAIEFHLQAMVQSAGKLVLIDKLLPKMKA
GGHRVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSKPDSERFVFLL
CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREM
FDRASLKLGLDKAVLQSMSGRDNSLGGGGGAAQQLSKKAIEDLLRRGAYGAIMDDEDEGA
KFCEEDIDQILQRRTKTITIESEGRGSTFAKASFVTSGNRTDISLDDPNFWDKWAQKADI
DMEMANGRNSLVIDTPRVRKQTRPFSATKDELAELSEGNSESDDTKPKLRRNHDRLNSYG
RTECFRVEKNLLVYGWGRWKDILNHGRFKKQLAEKDVESICRALLSYCLVHYRGDDKIKS
FMWDLIAPTEDGQTKELQNHLGLSAPVPRGRKGKKVKVQSSSFDIHKAEWLRKHNPEHML
QDNGYKKHLKHHCNKVLLRVRMLYYLKQEVIGSQAQRVLDGVECSDIKIWVPDPDHSELP
ALWWDAVCDKCLLLGVYKHGYEKYNTVRADPTLCFLERVGRPDEKAIAAEQRGNDFMDGD
VDDPEYKPAPALLKDDMEYDASSPGELIVTDNAGDAVPVTGGGGETSYWPSPSVLTARLR
RLITASQRYTKSRQILQIHQTQSPSQSITTMSAPLCPLPPSFNDALNPKMVAKIERQQRW
TRREEADFYRVVSTFGVVFDPNLGRFDWTKFRAMARLHKKTDESLQKYLCAFTAMCRRVC
RLPPKEGDSAVDPSLTLLPITEERASRTLYRVELLRQVREQVLCHQLLYERLPLCQVSSD
LTVWWEAGAHDRDLLIGAAKHGVSRTDYHILRDPELGFMAAQRNYSQTKAALHQSRASTP
PPPPPPHPQGPAAGSVPTASPPPGGLVPKVEPASEWEEGLEKQGESWSPPPPPVTPTGLE
ERLEERPLGGEAGEEERQAAAAAVRTKPLTPNSSERKPKKASKRSRKEARRGSGSDPGGG
GGSSSSSSSRSSSSSSSSSSSSHSGSSSSSSSSSGSSGSSSSSSSSSSDDSGGEGEEGKK
KVPAAASVKGFDEDSAASPMAAQDETLGAHAAENGVANNASHPFQGYMLAASYWPKDRVI
INRLDSICQAVLKGKWPGTRRVYEPGGAVASFYTTKLLDNANSGLCEDPSASPQGSKVTE
HVAENKEFSVKLNDQEGSLKLTFQKQGLPLKRPLEAEEGPQAQQQYLARLHELQSASDTG
LADITKPQCSFQTAPPGLTGQMRLNGGLDGQPLVKRRRGRRKNVEGMDLLFMNRSRVPSV
PDQVPPGWGGIGQVGTAGDSGPGLSQSSNQVPSGDTDSRVPVINLKDGTRLAGDDAPRRK
DLEQWLTEHPGFVADTGAFIPGVNKMQMQFHFQDGRPKQKRHRCRNPNKIDVNSLTGEER
VQIINRRNARKVGGAFAPPLKDLCRFLQENPEYGVPPEWADVVKQSGYLPESMFDRILTG
PIVPEEVSRRGRRPKNPLAKAAAAAASAPNPAAAAAAASALGLNPLLANGLLSGMDLSSL
QAFQQNLQSLQSLQLTAGLMGLPSDAGNVAASNLAAMFPMMLSGMAGLPNLLGMSGLLGK
QEGAGSSEETPKAEPSASGGPAHSSDSKGERTEGSAAPPSSFSSSSYAAAPQSASAASGH
PLSLNPLMLSSMLYPGMLLTPGLNSDPALPPPPPPPAASQSTERRAAERDDEALEDDEDD
DDDEEDSAEQKENSGPEGSGKAESSSSDSGGSSSSDDSDSSD
NT seq
8769 nt
NT seq
+upstream
nt +downstream
nt
atggacttcttcagcgaccccgccctcttcgtcggaggactggacgggctggacgaggac
gtcttcccctcggcgccgtcgctcgtggacgagctgaacctcgcggcggattttgagccc
ctgcaagtggtggcggcggagcccctggacccggggaagcaccccgacacggcgccgccg
gccgccgccgcgccttcttacggccagcagatgggccgctacgtcggcaccaaggcgcag
gctcctatggggccgccgtttgccgggcccggggtcggaggtggtggtggtggcggcacg
gtggcggaccggcacggccagtaccacaacgccgccgtgagccaagtgcctcagtccaac
gggctgttctgcagcagcagcccgatgtggggcgaccaggaccagaacgggaacatgtac
caccccttatcgcagcagcagctttgtcagcagcagcaactgcacgaccggcaacttcat
gtcaggcagcaacaacaacaacaacaacaacaacaacagcagcagtgcagaatgcagcag
catcatcagcagctgttgaaccagcagcacatcaacactcaggcgatgtccctgcagcag
catcacgacttctccttccaccagagagctccgagccagcagcagcttcaccatcctcag
caccgagggccgcggttccatccgagcaagtcttatctggagagcgggacctgcttgcag
ccgccgccgccgccacagggcggctaccagttgacccggggaggtcaaaccttctccggg
tcgggatcggaagacccgaacctgcccttccccatgcactctgcgccgatgggtcacccc
ttgcccacatgctcagtcggttctgccacggcgtaccaagccgctcggtacccggcgtat
ccgggcgagccggagatccccggtctcagccagcagtccgcagcctcgggggcgacgccc
gccgccgccgccgctgcccccctcacgtctacagtgcctgagctccctgggtcggtgtgt
cagttcccatcggcggcggcgatgaggaaccaggcggacgaatgtgccttccgggcgccg
cgccgctccggaggaaccaagtcgtcggagatgttcggcgagtcgatgaactgcttcccc
agcgccgccagccgccggccgcccgccgagcggcccccgagccgcggggccgcggacacc
aacggataccgagcgccgggggacggcctcctgccgtcgaaggccggcggcggcctggag
ggcctggagcctcccgacctcctgcccgacctcctgccccagctggaggccgctctcagc
caacggggcgagtccgactgttcctgggtcgactccagcaaggcgccacctgttgagcac
gcgcaggaacagcctcgaaagaacgctaatggtcccggtagccaggtccgggtcctcagc
cccccagtgaagagcagctcgtcgtcgtcctcctcttcctcgtcgtctccgtcctcgtcg
agctcctcgtcggagacgaagaggacgccgcggaggacgcagcatcagatggaggtggcc
acgcaggacaagcaggagaaggccaatcggataatatcggaggctatcgccaaggcccgg
cagcgcggggaaaagaacatcccgagagttatgagtccggagagtttccccagctcgtcg
tcgcagtacaagcaccggaaacgagagcacaagggaaagggcaaggcacggacgaaaggg
aagggctgtaggaaggcctgtattataccctcctccaagcccaataagaagacaaagatc
gggaaaattgtcatcaaaattgggaagaagaagaagcgaaagccggcgtcttcggaggag
tctgacgacgaccctcccccccgacacgctgctagagacgacgactttaagaggcgatcc
aatcgccaggtgaagagaaagaaatacgccgaagagctggacgcccggttgtcggacgac
gaggtcaaggccatcggcaaagccaagaaaagcggcacggcggcatccaaacagtcggct
gttcaactctttgtagagaatcccagtgaagaagatgctgctgttgtggacaaaatcatg
tcttctcgtatcgtcaagacggaggtttctccaggagtggtggtcgaaggagaggagttc
tttgtcaaatacaaaaactactcctacctgcactgtgagtgggccacggagcagcagctg
gtgaaggacaagaggattcagcagaagatcaaacgcttcaagctgaaacaagcacagagg
gcgctcttctttgcggatatggaagaggacccctttaacccggactatgtggaggtagac
cgagtgctggaggtgtcttattgtgaggacaaagacacgggagaggaggtggtgtactac
ctggtgaagtggtcctctctggcttatgaggacagcacctgggagctgaaggacgacgtg
gaccagagcaagattgaagagttcgagcagctgcaggcagtgaagccggtcacacgcagg
acggaacggcccccggccaatctgtggaagaagagggaccagtcgagagaatacaggaat
ggcaacagcctcagggactaccagctggaaggggtcaactggctcctcttcaactggtac
aacagacgtaactgcatcctggccgacgagatgggcctcggcaagaccatccagtccatc
acgttcctgcaggagatcctccgcgtgggcatcaaagggccgttcctcatcatcgcgccg
ctctccaccatcgccaactgggagcgcgagttccgttcgtggacctatcacaacgtcatc
gtctaccacggcagcatggtcagccggcagatgctccagcagtacgagatgtatttcagg
gatacgcagggccgtgtggtgcgaggcaactacaggttccaggccctcatcaccacgtac
gagatgatcctgggaggctgccccgaactcaacgccatcgagtggcgatgcgtcatcatc
gacgaggcccaccgcctcaagaacaagaactgcaagctgctggagggcttcaagctcatg
aacctgaagcacaaggtcctgctgacgggaacgcctctccagaacaccgtggaggagctc
ttcagcctgctccacttcctggagccggcccgcttcccatcggaaaaccccttcatgcag
gaatttggagacctgaagactgaggagcaggtgcagaagcttcaggcgatcctgaagccc
atgatgctgcgccggctgaaggaggacgtggagaagaagttggcgcccaaagaggaaacc
atcatcgaggttgagctcaccaacattcaaaagaaatactaccgcgccatcctggagaag
aacttcaccttcctggccaaaggagcgggcccggccaacatgcccaacctggtgaacacc
atgatggagctgaggaagtgctgcaaccacccctacctcattaaaggagcagaggagaag
atcctcgaggacttccgggaggtgtacagccccaccgcgattgagtttcacctgcaggcg
atggtgcagtcagccgggaagctggtcctcatcgacaagctgctgcccaagatgaaggcc
ggaggccaccgggtgctcatcttctcccagatggtgcgctgcctcgacatcttggaagac
tacctcatccagagaaggtacttgtacgagcgaatcgacggccgcgttcgtgggaacatg
cggcaggcggccatcgaccgcttcagtaagcccgactcggagcgcttcgttttccttctg
tgcacgagggccggcggcctgggcatcaacctcacggcggcagacacctgcatcatcttc
gactcggactggaacccgcagaacgacttgcaggcccaggcgcgctgccaccggatcggc
cagaacaaagccgtgaaggtgtaccgcctcatcaccaggaactcgtacgagcgagaaatg
ttcgaccgcgccagcctcaagctcggcctggacaaagccgtgctgcagagcatgagcggc
cgagacaacagcctgggcggagggggaggggcggcgcagcagctctccaagaaggcgatt
gaggacctgctgcgacgcggcgcctacggggccatcatggacgatgaggacgagggggcc
aagttctgcgaggaggacatcgaccagatcctgcagcgcaggaccaagaccatcaccatc
gagtccgagggacggggatccaccttcgccaaggccagttttgtgacgtccggaaaccgc
acagacatttctctggatgaccccaacttctgggacaagtgggcccaaaaggccgacatt
gatatggaaatggcaaacggcagaaacagcttggtgatcgacactcctcgcgtccggaag
cagacgaggccgttcagcgccaccaaggacgagttggcggagctctcggagggcaacagc
gagagcgacgacaccaaacccaaactcaggcgcaaccacgaccgcctcaacagctacggg
cgcacagagtgcttcagggtggagaagaacctgctggtgtatgggtggggtcgttggaag
gatattctcaatcacgggcgttttaagaagcagctcgcggagaaggacgtggagtccatc
tgcagagccctcctgtcctactgcctggtccactaccgcggagacgacaagatcaaaagc
ttcatgtgggacctgatcgccccgaccgaggacggacaaaccaaggagctgcagaaccac
ctggggttgtctgctcccgtcccccgtggcagaaagggcaagaaggtgaaagtccagtcc
agctccttcgacatccacaaagccgagtggctccgcaaacacaacccggagcacatgctg
caggacaacggctacaagaagcacctcaagcatcactgcaacaaggtgctgctccgggtc
agaatgctctactacctgaaacaagaggtgataggaagccaggcccagagggtgctggac
ggcgtggagtgcagtgacataaagatctgggtcccggaccccgaccattccgagctgccg
gccttgtggtgggacgccgtctgtgacaagtgtctgctgctgggcgtctataagcacggt
tatgagaagtacaacacggtgcgcgccgacccgacgctgtgcttcctagagcgcgtgggc
cgaccggacgagaaggccatcgccgccgagcagaggggcaacgacttcatggacggggat
gtggatgacccagagtacaagcctgctcccgctctgctgaaggacgatatggagtatgac
gcctcgtctcctggagagttgattgtcactgacaacgccggagacgcagttccagtgacg
ggcggtggcggtgaaacctcctactggccgtccccctcggtgctgacggcccggctcagg
cgcctcatcacggcctcccagcgctacaccaagagccggcagatcctccagatccaccaa
acccaatctccgtctcagtcgatcacgacgatgtccgccccgctctgtccgctgccgccc
tcgttcaacgacgccctcaaccccaagatggtcgccaagatcgaacggcaacaaaggtgg
accaggcgagaagaagccgacttctaccgcgtggtctcgactttcggcgtcgtgttcgac
ccgaacctcggccggttcgactggaccaagttccgggccatggcccggctgcacaagaag
accgacgagagcctgcagaaatacctgtgtgctttcaccgccatgtgccgaagggtgtgc
cgcctgccgcccaaagagggagactccgcggtggacccgtctctcaccctcctgcccatc
acggaggagcgagcgtctcgcacgctgtaccgggtggagttgctccgccaggtgagggaa
caggtgctctgccaccagctgctctacgagcgcctgccgctgtgccaggtgagctccgac
ctgacggtgtggtgggaggccggcgcccacgaccgcgacctgctgatcggtgccgccaaa
cacggcgtcagccgcacggattaccacatcctgagagaccctgaactcggcttcatggcc
gcccagcgcaactacagccagacgaaagccgcgctgcatcagtcccgcgcctccaccccg
ccgccgccgccgccgccgcaccctcagggcccggccgccggctcggtgccgacggcctcg
cctccgcccggcgggctcgtacccaaagtggagccggcctccgagtgggaggagggcctg
gagaagcagggggagagttggagccctcctccgccgccggtgactcccacggggctggag
gagcggctggaggagcggccgctgggcggcgaagccggcgaggaggagaggcaggcggcg
gcggcggcggtgagaaccaagccgctcacgcccaactcctccgagaggaaaccgaagaag
gccagcaagaggagccgcaaggaggccaggcgaggctcggggtccgacccgggcggcggc
ggcggctcctcctcgagctcttcctcgcgctcctcttcctcctcctcctcctcttcttcc
tcgtcacattccgggtccagctcctcctcctcttcatcgtctggctcctctggctcgtcg
tcgtcctcctcctcctcatcttctgacgacagcggaggtgagggagaggaggggaagaag
aaagtgccggcggcagccagcgtgaagggcttcgacgaggacagcgcggcgtctccgatg
gcggcgcaggacgaaaccctcggcgcccacgcggccgagaacggcgtcgccaacaacgcc
tcgcatccgttccaggggtacatgctcgctgcgtcctactggccgaaggatcgcgtgatc
atcaaccgcctggacagcatctgccaggcggtgctgaagggcaagtggcccggaacccgc
cgggtctacgagcccggaggcgcggtggcctccttctacaccaccaagctgctggacaac
gccaacagcggcctgtgcgaggacccctctgcctcgccacaggggtcaaaggtgaccgag
catgttgcagaaaacaaggagttctcagtcaaactcaacgatcaggagggaagtctgaag
ttgaccttccagaaacaaggtctacctctgaagaggcccctggaggccgaggaggggccc
caggcccagcagcagtacctggcgcggcttcacgagctgcagagcgcctcggacacgggc
ctggccgacatcaccaagcctcagtgcagcttccagacggcgcctccaggtctcactggt
cagatgaggctgaacggaggactggacggtcagccgctggtgaagaggaggaggggaagg
aggaagaacgtggaggggatggacctgctcttcatgaacaggagtagagtcccttctgtt
cctgatcaggtgcctccagggtggggcggtattggccaggtgggcacggccggggactcc
gggccgggcttaagccagagctccaatcaggtcccatccggggacaccgacagccgggtc
cccgtcatcaacctcaaagacggcaccaggctggccggggacgacgcccccaggaggaaa
gacctggagcagtggctgacggagcaccctggctttgtggccgacacgggagcttttatc
cccggtgtaaataagatgcaaatgcagttccacttccaggacgggcgtcccaagcagaag
aggcaccgctgcaggaaccccaacaagatcgacgtgaacagtctgaccggagaggagcgc
gtgcagatcatcaacaggaggaacgcccgcaaggtcggcggcgccttcgctccccccctg
aaggatctgtgccggttccttcaggagaacccggagtacggagtcccgcccgaatgggcc
gacgtggtcaaacagtcgggttacctcccggagagcatgtttgacagaatcctgacgggc
cccatcgttcccgaggaggtgagccggcgtgggcgtcgacctaagaatcctctggccaag
gcggcggcggcggccgcatcggcgcccaacccggcggcggcggcggcggcggcctccgcg
ctcggcctgaaccccctgctggccaacggcctcctctccggcatggacctgagcagcctg
caggccttccagcaaaacctccagagcctgcagtccctgcagctcaccgcgggcctgatg
ggtttgccgtccgacgccggcaacgtggcggcgagcaacttggcggccatgtttcccatg
atgctctctggcatggcgggactcccgaacctgctcggcatgagcggcttgctggggaag
caggagggcgcggggagctccgaggagacgccgaaggcagagccgtctgcctccggaggc
cccgcccactcctcggactccaaaggggaaaggaccgaggggtcggccgcgcctccttcc
agcttctcctcctcctcctacgccgccgccccacaaagtgcttcggccgcctccggtcac
ccgctgtctcttaaccccttgatgctctccagtatgctttacccagggatgctcctcact
ccaggccttaacagtgaccccgccctccctcctcctcctcctcctcccgccgcctcccag
tcgacggagcggcgagcggcagagagggacgacgaggcgttggaagacgacgaagacgac
gacgacgacgaagaggactctgcggaacaaaaggagaacagtggtcccgaggggtcgggc
aaagcggagtcgtcttcatccgactccgggggctcgtcttcatcggatgattccgactcg
agtgattag
DBGET
integrated database retrieval system
