Pseudoliparis swirei (Mariana hadal snailfish): 130192235
Help
Entry
130192235 CDS
T09868
Symbol
fn1b
Name
(RefSeq) fibronectin 1b isoform X1
KO
K05717
fibronectin 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
pswi04810
Regulation of actin cytoskeleton
pswi04820
Cytoskeleton in muscle cells
pswi05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130192235 (fn1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130192235 (fn1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130192235 (fn1b)
04810 Regulation of actin cytoskeleton
130192235 (fn1b)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
130192235 (fn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130192235 (fn1b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130192235 (fn1b)
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130192235 (fn1b)
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130192235 (fn1b)
Membrane trafficking [BR:
pswi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
130192235 (fn1b)
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of bladder cancer cells
130192235 (fn1b)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130192235 (fn1b)
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type I domain-containing proteins
130192235 (fn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
fn1
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
fn2
NDNF
Fn3_Dep-1_2nd
Interfer-bind
FN3_Tor_3rd
Motif
Other DBs
NCBI-GeneID:
130192235
NCBI-ProteinID:
XP_056268005
LinkDB
All DBs
Position
4:18211347..18233508
Genome browser
AA seq
2466 aa
AA seq
DB search
MTGGPLAGLLVALCVSSAVHGLPKKSKRQSGQYQVFPELRDAAAVSPVGCEENGRSHRIN
EQWEKPYLGSTLICTCNGAAGIKCKTKPEVEESCYDKSNDRSYRVGETYERPKDRMMWDC
TCIGSGRGKISCTIANRCHEGGMSYKIGDTWQRPHDTADYMLECVCLGNGKGEWTCKPVA
ERCYDTTATASYIVGETWEKSYQGWMMLDCTCLGEGNGRITCTSRNRCNDQDTRKSFRIG
DSWSKKDTSGHIVQCQCMGNGRGEWKCERHNAGRTAGTVVLTPDQSQAQVLPDHNIEGTC
RSDSGATYYDRQRWFRSQGSKQMLCTCLGNGVSCQEWEARKLAYGGISDGQPCAFPFVFM
GKTYYSCTSDGRTDGQLWCATSSDYEKDPQYSFCTEKNAIVATRGGNSNGGLCHFPFLYS
GRNYTDCTSDGRRDNMRWCGTTHDYDTEQRFGFCPMAAHEESCTTNDGLMHRVGDKWDKR
HDVMGHAMECTCLGNGRGEWSCVAQSQLRDQCVVDSLSYEVNQDFTKRHDEGYMMNCTCL
GQGRGRWKCDALDQCQEPQTRAFYQIGDTWDKVIHNIHYRCYCYGKGVGEMRCEPQQTYQ
DGHRPVQVIITEAGKQPDSHPIQWNPPSSVQITQYILKWRIKNNRSPWREVTIPGHLHTY
TISGLRPGITYEGQLISILHYGRREVTRFDFTTTHGSLETSEGETTLPPAVVDTSESVTE
ITSNSFIVSWTSASSTISGFRVEYELSEDGAKPKVLDVPRTASSVTIVDLLPGRRYNVNV
YELPDQGQPNLILTTTQTTAPDTPAQHAVDEVGESSIRISWSKPQAPITGYRVVYTPSVE
GSSTELNLPDSETSVTLADLLPGLLYNISIYAVEEDQESEPVFVQVNTAGSPVPEDVPAP
TDLQFYEVTDMKITITWTGPPSEVTAYRVHFTPIGPDGSETRLLQLPFSPNAYADITHLQ
PGTLYRFYIYAINGGVESKPLMGERWTKPDSPSDVRFTDIGHNSVMVIWEAPRTIVSGYR
LFLSIKGSNPVEKRIPSGVTQYPLKNLRPETKYTAILHSELDNELSEGVSTDFTTSPQMG
NAPAFNTDVTDSSITITWIPVRRFSYKLSVLPSQEGESPRQETSDSGLIQIPGLIPGTQY
TYSVQPIFNGRNRGNPITRNVVTSMSPPTDLRVESNPATGDLTVHWVASKTPGITGYRVT
STPTTGQRGNTLEEFVPADQTSCMLESLNLGAEYNISVFTTKGHLESVPVSTIVTPDIPA
PSHIVFVDITDTTLGLRWIPLTYTTITGYRITVVTSGESLPIFQDMVEASAGYYTIRGLE
PGVDYDISIFTVTEEGESEPTVYTKQTQAAIPAPTNLQFRGVGPDHIRVTWAVPHVATPS
DISRFVIRYHPTATDDDIKEVNVGGATNTFVLENLLPNTEYRISVECVYGERVSEPATGT
QRTTLDSPTGLDFSDIRTNSFTVHWLAPTAAISGYRINFQKTSGGRSKDERLPPSRNHFT
LTGLTPETEYLVSVYAVNNNQESHPLTGTQATISDAPTDLQVTSSTPSSITIRWDAPSVT
VKIYRITYGGTRGEAPQEFSIPGTQTTATVTGLNPGTDYTITVYAVTGRGDSPASNTPIY
ITHKTDTESPTDMKLTDVSDNALTVRWSPAQGPIRGYRITSVPKNGLGPSYSEVVAPDQT
QMTFTGLMPTVEYVVSVYALGNDGQPSSPVVENAITAMDRPKDLTFTDIDSNSMRITWDS
PDGTVTSYRVLYSSSEDRERDLFPAPRGDQNTVVLRNLRPGTEYTVKVIALHGRTPSTPL
VGTQATVIPAPTNLTVSDVGPSTFTVSWRAPNARLSGYRMVVNPKNINGPTKEMNVAPDT
TRVVVPGLMVATTYEIHVYALKNSVTSRPLDGETTTLEDVSPPRRVRISDMKDSSFTLTW
RSKAETITGYLIDATPLSGSHPTISSTIPGETNTYTLTGLQPDTTYSVHLYTLKHDTKSD
PFTLIITTAKAVVQAPTNLQFTSLTPTSISFTWQPPATHITGYYVTYEESGGAPQELNPR
PHAGQNYATVSGLRPATEYIIKIIAIQNTQRSTPLVGRIRTQPDSLLLLPLPHNPGGIDD
RLDVPETDLDNTVQVVGNNGQDGHEGQSQNVEYTEFNNNNRDNNRYNGNSGNPQSPYGQV
HEPLVFVPLPDAEGRRLPILKLNLPIGSLFDNETGVPQEAQTRTSISWKPYKQSNAYLVS
CHPLSHLDEKMFQVRLPGTATTATLIGLSSGENYNVIVEAIMGALKHKILEQIVTAGSTV
PDRVPSTKDSCYDAFTSTFHDVGGEWERMSETGFKLWCRCLGLGTGHFRCDSSKWCHDSG
NNYRIGEKWDRRAENDHLMSCTCLGNGKGEFKCEPHDSVCYDGGKTYQVGNQWQKEYLGA
ICTCTCFGGQQGWRCENCRRPGGDVAASLLLQPVSYGNKLQNIHCPIECLRPDLLADAHA
PQSPLE
NT seq
7401 nt
NT seq
+upstream
nt +downstream
nt
atgactggtggcccactggcagggttactggttgcgctgtgcgtaagcagcgcagtccac
ggcttaccgaagaagagcaaacgacagagtggccagtatcaggtgtttcctgagctcagg
gacgcagcggccgtctctccagtcggctgtgaggaaaacggtcgctcacacagaataaac
gagcagtgggagaagccctacctggggagtacactgatatgcacctgcaatggagcagca
ggcatcaaatgtaaaactaaacccgaagtggaggagtcctgttatgataagagcaatgac
cggtcataccgggtcggtgaaacctacgagagacccaaggacaggatgatgtgggactgc
acctgtattggttccggtcgtggcaagatcagctgcaccattgcaaatcgttgccatgaa
ggtgggatgtcctataaaatcggagacacttggcagaggcctcatgacacggctgactac
atgctggagtgtgtgtgtctcggaaatggcaaaggagagtggacctgcaaaccagtggct
gagcgttgctatgacaccaccgctacggcatcgtacatcgtgggggagacctgggagaaa
tcgtaccaaggctggatgatgctggactgcacctgtctgggagagggaaatggacgcatc
acttgcacctcaaggaatcgttgcaacgaccaggacaccaggaagtccttccgtattggg
gactcatggtcaaagaaggacacaagtggccacatcgtgcagtgtcagtgcatggggaac
ggtcgtggagagtggaagtgtgagagacacaacgcaggccgaactgcaggtacggtggtg
ttgacccccgaccagtcccaggcccaggtgctgccggaccacaatatcgaggggacgtgc
cgctcagactctggagccacctactacgacaggcagcgctggttcagaagccagggcagc
aagcagatgctctgcacctgtctgggcaacggggtcagctgtcaggagtgggaggccagg
aagctggcgtatggtggcatctctgacggccagccgtgtgcattcccgttcgtcttcatg
ggaaagacgtactactcctgcacctcagacggacgcacagatgggcagctctggtgcgcg
acatcttcagactacgagaaagacccgcagtactctttctgtactgagaagaatgccatt
gtggcaacacgaggtggcaactccaacggcggcctgtgccacttccccttcctctacagt
ggacgcaactacactgactgcacctccgacgggcgccgtgacaacatgaggtggtgtggc
accacccatgactacgacacagaacagcgctttggattctgccccatggctgcccatgag
gagtcatgtaccaccaacgatggactgatgcaccgcgtaggcgataagtgggacaaacgc
catgatgtcatgggtcacgcgatggagtgcacatgcctgggcaacggccgtggggagtgg
agctgtgtggctcagtcacagctgcgagatcagtgtgtggttgattccttgtcctatgaa
gtaaaccaggacttcaccaagcgccacgacgagggctacatgatgaactgcacctgcctt
ggacaggggcgtggacgctggaagtgtgacgcgctcgatcagtgtcaggagccacagaca
agagctttctatcagattggagatacgtgggacaaagtcatccataatatccactaccgc
tgttattgctatggcaaaggggttggagagatgagatgtgaacctcagcagacctaccaa
gacggccacagacctgtccaggtgatcatcacggaggcaggaaaacaaccagactcacac
cctattcagtggaaccccccctcatcggttcaaatcacccagtacatcctcaaatggaga
attaaaaataaccgctctccctggagggaggtcaccatccccggacacctccacacctac
accatcagcgggctgcgtccaggcatcacctacgagggtcagctgatcagcatcctgcac
tacggacgccgcgaggtcacacgcttcgatttcaccacgacccacggttccttggaaacg
tcggagggagagacgaccctgcctcctgcggtggtggacacttctgagtctgtgacagaa
atcacgtcaaacagcttcattgtgtcctggacgtcagcctcctcgaccatctctggcttc
agggtggagtatgagctcagtgaggacggggccaagcccaaagtcctggatgttccccgg
acagcctcctctgtcaccatcgttgacctcctgccaggacgcagatacaacgtcaacgtc
tatgagctcccagatcagggacaaccaaacctcattctgactaccacccagactacagct
cctgacacccctgctcagcatgcagtcgatgaggtgggagagtcctccatcagaatcagc
tggtccaagcctcaggctcctattactggttaccgggtggtgtacacaccgtcagtggaa
ggcagcagcactgagcttaacctgccagactcagaaacctcagtgaccctggccgacctc
ctgcccggtctgctttacaacatcagtatctatgcagtggaggaggaccaggagagtgag
cctgtgtttgtacaggtcaatacagccggatcccctgtaccagaggatgtcccggcaccc
acagacctgcagttctacgaggtgactgatatgaaaatcaccatcacctggaccggtcca
cccagcgaggttaccgcttacagggtgcacttcacccccattggacctgacggctctgag
acgaggctcctgcagctgcctttctcccccaacgcatatgctgatatcacccacttgcag
ccgggcacactgtaccgcttttacatctacgccatcaatggtggagtggagagcaagccc
ctgatgggagaaaggtggaccaaaccggattctcccagtgatgtgcgcttcactgacatt
ggccacaacagtgtcatggtcatttgggaggccccccgcaccatcgtcagtggctaccgt
ctcttcctgagcatcaagggctccaaccccgttgagaagaggatccctagcggcgtcaca
cagtaccctttaaagaatttacgtccagagacgaagtacacggccatcctgcactcagaa
cttgacaatgagctgagcgaaggcgtctcgacagactttaccacctctcctcagatggga
aatgctcctgcttttaacactgatgtcactgacagctccatcaccatcacctggatacct
gttcgtaggttcagctacaagctgtctgtgctccccagccaggaaggcgagtctcccaga
caagagacctctgactctgggcttattcaaattcccggtctgattcctgggactcagtac
acttacagcgttcagcccatcttcaacggacgcaaccgtggaaaccccatcacccgcaat
gttgtcacttccatgtctcctcccactgacctgcgagtggagtccaaccccgcaacagga
gatctcactgtccactgggtagcttccaaaacaccaggcatcacaggctacagagtgaca
agcacaccaaccaccggccagcgagggaacaccctggaagagtttgtccctgcagatcaa
acctcatgcatgctcgagagcctgaatctgggggccgagtacaacatcagtgtcttcact
accaagggccatttggaaagtgtgcccgtgtccacaattgtcacaccagacatccccgcg
ccaagtcacattgtctttgtcgacattactgacaccaccctcggcctgcgctggatccct
ctgacttatactaccattactggttaccggataacggtggtaacgtcaggcgagagcttg
ccaatttttcaagatatggtggaagcatctgctggttattacacaattcgtggtttggag
cccggcgtggactatgacatcagtatcttcactgttacagaggaaggggaaagcgagccg
accgtatacacaaagcaaacacaagctgctattccagctcccaccaacctgcagtttaga
ggggtgggtcctgaccacatcagggtgacatgggcagtccctcatgtcgccacaccgagc
gacatctctcggtttgtcatccgttaccatcccacagccacagacgacgacatcaaagag
gttaatgttggcggagccaccaacaccttcgtgctggagaacctgcttcccaacactgag
taccgtataagtgttgagtgtgtgtacggtgaacgagtaagtgaaccagccacagggacc
cagaggacaactctggactcccccaccggcttggacttctccgacattcgcaccaactcc
ttcaccgttcactggctggctccgaccgctgctatcagcggctaccgcatcaactttcag
aagacgagcggcgggcggtcgaaggacgagaggctgcccccatccaggaaccacttcact
ctgaccggactgacaccagagacagagtatctggtctctgtgtacgctgtcaacaacaat
caggagagtcatcctctgactggcacacaggccaccatctccgatgctcccactgacctg
caggtgacatcgtccaccccgtccagcatcaccattcgctgggacgccccctctgtcaca
gtgaagatctacaggatcacctacggaggcacacgtggtgaggctcctcaagagttcagc
atcccaggcactcagaccaccgccaccgtcaccggtctcaaccccggtactgactacacc
atcacggtgtatgctgttaccggaagaggggacagccccgcttccaacacccccatctac
atcacgcacaagactgataccgagtcccccactgacatgaaactgactgatgtgagtgac
aacgccctcacagtgcgctggtctcctgctcagggaccaatcagaggctacagaatcacc
agcgtccccaaaaatggcctggggccatcctactctgaggtggtagcccctgatcagact
cagatgacattcacaggtctgatgcccactgttgagtatgttgtgagtgtctatgccctg
ggcaacgatggacaaccctcctcccccgtggtggagaatgcaatcactgctatggaccgt
cccaaggacctgacctttactgacatcgactccaactccatgcgcatcacttgggacagt
cctgacggcacagtgacatcatatcgcgtcctgtactccagctcagaagatagagagagg
gacctgtttccagctcccagaggagaccagaacactgtggttctgaggaaccttcgcccc
ggaacagagtacactgtcaaagtcatcgccctccatggacgcacacccagcacacctttg
gtgggaacccaggccacagtgatccctgctccgaccaacctgacggtctcagatgtcggc
ccatccaccttcaccgtgtcatggcgagcccccaatgcacgcctgtcaggctaccgcatg
gtcgtcaaccccaaaaacatcaacggccccaccaaagagatgaacgttgctccggacacc
acccgcgttgtcgtcccagggctcatggtggcgaccacatatgagatacatgtctatgct
ctgaagaactccgtcactagcaggcctctggatggagagacaaccacactggaagatgta
agtcctcctcggcgtgtgcgcatctctgacatgaaggattcttcttttactctgacctgg
cgctccaaggctgaaaccatcactggttacctcattgatgccacgcccctcagtggctcg
caccccaccattagcagtaccatcccaggagaaacaaacacctacactctcacaggtctg
cagccagacacaacatactctgttcacctgtatactcttaagcacgacacaaagagcgac
ccatttactctcatcatcacaacagctaaagcagtggtccaggcccccaccaacctccag
ttcacatctttgacccccacctccatctccttcacctggcagccacctgccacacacatc
acaggatactatgtcacctatgaagagtcaggaggagcaccacaagagctcaacccacga
ccccacgccggccaaaactacgccaccgtatctggcctgagaccagccaccgagtacatc
atcaagatcattgccatccagaacacacagaggagcacacctctggtgggcagaatcagg
actcaaccagactccttgcttctcttgcctctgccccacaaccccggaggtattgatgac
aggctggatgtgcctgaaacagacttggacaacacagtccaggtagtgggcaacaatggc
caggatgggcatgaaggccagagccagaatgtggagtacacagagttcaacaacaacaac
agagacaacaaccgatataatgggaacagtggcaacccacagtctccctatgggcaagtc
catgagcccctggtctttgtgccccttcctgatgcagagggccgcagactgcccatcctg
aaactgaacctgccgattggctctttgtttgataacgagacgggagtgccgcaggaggcc
caaactcggacctccatctcctggaagccttacaagcagagcaacgcctacctggtgtcc
tgccatcccctcagtcacttagatgagaagatgttccaggtccgccttccaggcacagcc
actactgctaccctgattggactctcctccggagaaaactataatgttattgtggaggct
ataatgggggcgctcaaacacaaaatactggagcagatcgtcactgccgggagcacagtc
ccagatcgagtgccctccactaaggactcgtgttacgacgcctttacttccaccttccac
gatgttggcggggaatgggagcggatgtctgagacgggcttcaagctgtggtgcaggtgc
ctgggtctgggaactggccacttcagatgtgattcatccaagtggtgccatgacagtggc
aacaactaccgcattggagagaagtgggaccgccgcgcagagaatgatcacttgatgagc
tgtacttgcttgggaaatggcaaaggagagttcaagtgtgaaccgcatgattcggtgtgc
tatgatggtggcaaaacttaccaagtgggaaaccagtggcagaaggagtacctgggtgcc
atctgcacctgcacgtgctttggaggacagcagggctggcgatgtgagaactgccgcaga
ccaggtggcgatgtcgctgccagtctgctgctgcagcctgtgagttatggaaacaaacta
caaaatattcattgccccattgagtgcctccgacctgacctgctggcagacgcacacgct
cctcaaagtcctctggagtaa
DBGET
integrated database retrieval system
