Pseudoliparis swirei (Mariana hadal snailfish): 130192293
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Entry
130192293 CDS
T09868
Symbol
neo1a
Name
(RefSeq) neogenin 1a isoform X1
KO
K06766
neogenin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04350
TGF-beta signaling pathway
pswi04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
130192293 (neo1a)
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
130192293 (neo1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130192293 (neo1a)
Cell adhesion molecules [BR:
pswi04515
]
Immunoglobulin superfamily
DCC/UNC5 family
130192293 (neo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
Pur_ac_phosph_N
ig
FN3_DSCAM-DSCAML_C
Fn3_VIN3
V-set
Interfer-bind
NDNF
fn3_2
fn3_SORL1
Ig_RIMBP2
Sp38
Fn3_Dep-1_3rd
V-set_CD47
EphA2_TM
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
130192293
NCBI-ProteinID:
XP_056268104
LinkDB
All DBs
Position
4:29255097..29400199
Genome browser
AA seq
1507 aa
AA seq
DB search
MAERGALPLLSLLCLTFLSTETAAAKHVDKGSAAQPFNPFWFTVEPRDTLAVRGNAALLN
CSAHSGAATPARVEWKKDGTFMSLDSDERRSVLADGSLLFAHVVHSKHNKPDEGTYQCVA
TIDNVGSISSRTARLSVAGMPRFASQPSPAAVRLGDNQAMACEVNSDLVPFARWEKDRLP
LEPSARLVRLPSGALVIANATEADAGLYRCLVENAGSSKASDEAQLQVLPETGEDRKLEF
LVQPTSVTKAVGAGVLLPCLVSGFPVPHVRWMFGDKLLQESEGRVELLGGGSVLISNLTE
EDAGVYTCVAEAANASLEAQAQLSIQVPPQFVKRPDNVYAHESMDIVFECEVSGSPAPTV
KWVKNGDAVIPSDYFKIIKEHNLQVLGLVKSDEGFYQCLAENDAGNIQSSAQLIILDHDV
ALPSLLPPSLTPNTTDHVTPGSGGVAGPAGPTPSGPRDVVASLVSTRFIKLTWRSPAEPH
GNELTYSVFYSQEGTSRERVVNTSRPGEMQVTIQNLMPDTKYRFRVVAHNGNGQGESSAA
LKVATQAEVQVSGPAPNLQAVSNAPTSVSLSWDKPLMGNGEMLTYKLYYTDKSYGDEQDV
DVDIQSYTMTGLKKNNEYSFRVVANNKHGPGVSTDDITVRTLSDVPSAPPQNLTLEVQNS
KGIMLRWQPPPLNGQNGEITGYKIRYRKGSRRSEAAETTGGTQLLKLIDGLERGTEYSFR
VSAMTVNGTGPATEWTATETFESDLDESRVPDQPSSLHVRPLVNSIVVSWTPPENQDIVV
RGYTIGYGIGSPHARTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPVYESAITR
PQSDPADPDVDLYELFHAPYTSVPDPSPMMPPVGVQSSVLSHDTIKVTWADNSLPKNQKI
TDNRFYTVRWKTNIPANTKMKMANTTSLSHVVIGLKPNTLYEFSVMVTKGRRTSTWSMTA
QGTTYETIPSSSPKDVTVVSKENKPRTIIVNWQPPSEANGKITGYIIYYSTDVNAEVHDW
VIEPVVGNRLTHQIQELTLDTTYYFKIQARNSKGMGPMSEAVHFRTPKTESSDKMANDQA
SNLPPKQGPSGNQHPHDPRTAVGVGGNSEGHILVIVIIISVGAFTIIVVVVGAFLCTRRT
TSHQKKKRAASKSSNGSHKYKGNSKDLKPPDLWIHHERLELKPMDKSPDPNPVMTETPIP
RTSQDITPADGGLDSNPHLQQRRNSYRGHESEDSMSTLAGRRGMRPKMMMPFDAQPPQPV
ISAHPIHSLDNHHHHYHMGSLASPTRSYLYHQGGGHSRPHACASSISHLDRVDSTESVRN
TPCSEPLPPAAASSQASCPSEIMADPEGSYHGSTTTEEEGSYSSNLPPHRSAHPHAHAHP
LKSFGVPTIPTTGHPTFESPALPSTPLLAQTGPPTHPHVVKTASSGTLGRTWNPMVVTVP
NASDVPETSKMLEDVDSVLASLLPCPSPAPRSNPVPLPQSYEPDELTEEMAHLEGLMKDL
NAITTAP
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcgaggagctctgccgctcctctctctcctctgtctcacctttctctccacg
gagaccgccgcggcaaagcatgtcgacaaaggttcagcagcgcagcccttcaaccccttc
tggttcacggtggagcctcgggacacgctggcggtccggggcaacgcggcgctgctcaac
tgctcggcgcacagcggcgcggcgacgccggcgcgcgtcgagtggaagaaggacggcacc
ttcatgagcctggactcggacgagaggcggagcgtgctcgccgacggctcgctgctcttc
gcccacgtggtccactccaagcacaacaagcccgacgagggcacctaccagtgcgtcgcc
accatcgacaacgtcgggtccatctccagccggacggcgcgtctctccgtggcggggatg
ccgaggttcgccagccagccgtcgccggccgccgtgcgcctcggggacaaccaggcgatg
gcgtgcgaggtcaactcggacctggtgcccttcgcccggtgggagaaagaccgcctgccg
ctggagccgagcgcccggctggtccggctgcccagcggcgccctggtcatcgccaacgcc
acagaggccgacgccggcctctaccgctgcctggtggagaacgcggggtcgtccaaggcc
agcgacgaggcccagctccaagtgctgccagaaaccggagaagacaggaagttggagttc
ctggtgcagccgacgtcggtgaccaaggcggtgggcgccggcgtgctgctgccctgcctg
gtcagcgggttccccgtgccgcacgttcgctggatgttcggtgacaagctgctccaagaa
agcgagggtcgagtggagctgctgggaggaggcagcgtcctgatctccaacctcacggag
gaggacgccggcgtctacacctgcgtggcggaggccgccaacgcaagcctcgaagcccag
gcccaactctccatacaagttcctccccagtttgtcaagcggccggacaacgtttacgcc
cacgagtccatggacatcgtctttgagtgcgaggtgtcggggtcaccggctcccaccgtc
aagtgggtcaagaacggagacgccgtcatccccagcgactacttcaagatcatcaaggag
cacaacctgcaggttctgggtctggtcaagtcggatgagggcttctatcagtgcctcgcg
gagaacgacgcaggcaacatccagtccagcgcccagctcatcatcttagatcacgatgta
gccctgccctctctccttcccccctcactgactcctaacactactgaccatgtaacgcca
ggctccggaggtgtagccggtccggcggggcccacgccctccggcccccgggatgtcgta
gcttccctggtgtccacccgcttcatcaagctgacctggcgctcgccggccgaaccccac
ggaaacgagttgacctactctgtgttctacagccaggagggaaccagcagggagcgagta
gtgaataccagccgtccaggggagatgcaggtcaccatccagaacctcatgccagacacc
aaatatcgcttcagggtcgtggcccacaacggcaacggccagggagagagctctgcagcg
ctcaaagtggccacccaggctgaagtgcaagtgtccggtcccgctcccaacctgcaggcg
gtgtccaacgcgccgacctccgtctctctgagctgggacaaaccgctcatgggcaacggg
gagatgctcacctacaagctgtactacaccgacaaaagctacggcgacgaacaggacgtt
gacgtcgacattcagtcctacaccatgaccgggctgaagaagaacaacgagtacagtttc
cgcgtggtggccaacaacaagcacggtccgggcgtctccaccgatgacatcaccgttcgc
acgttgtccgacgtaccaagtgctcctcctcaaaacctcaccctggaggtccagaactca
aagggcatcatgctccggtggcagcccccacccctcaacggccagaacggtgagatcacc
ggctacaagatccgataccggaaagggtcccggaggagtgaagcagccgagaccaccgga
ggcacccagctcctcaagctcatcgacggtctggagcgcggcaccgagtactccttccgg
gtgtcggccatgacggtgaacggcaccggaccggccaccgagtggaccgccacggagacc
ttcgagagcgacctggatgaatctcgcgtgccggaccagcccagctccctccatgtccgg
ccgctggtcaacagcatcgtggtgagctggacgccgccggagaaccaggacatcgtggtg
cgcggctacaccatcggctacggcatcggcagtccgcacgctcggaccatcaaggtggac
tacaagcagcgctactacaccatcgagaacctcgaccccagctcccactatgtgatcacc
ctgaaggccttcaacaacgtgggcgaggggattcccgtgtacgagagcgccatcaccagg
ccgcagtccgaccccgcagaccccgatgttgacctgtacgaactcttccatgctccgtac
acctcagtaccagacccctccccaatgatgccacccgtgggcgttcagtcctcggtgctg
agccacgacaccatcaaggtgacctgggccgacaactcgctgcccaagaaccaaaagatc
accgataaccgcttctacacggtgcgctggaagaccaacatccccgccaacaccaagatg
aagatggccaacaccaccagcctgagccacgtggtgattggtctgaagcccaacacgctc
tacgagttctccgtcatggtgaccaaagggcggcgcaccagcacgtggagcatgactgca
cagggcaccacctatgagaccattcccagctcctccccgaaagacgtgaccgtggtgagc
aaagagaacaagcctcgcaccatcatcgtcaactggcagcctccctcggaggccaacggc
aagatcaccggctacatcatctactacagcacggacgtaaacgccgaggtccacgactgg
gtcatcgaacccgtggtgggcaaccgcctgacccaccagatccaggagctgacgctggac
accacctactacttcaagatccaggcccgaaactccaagggcatgggccccatgtctgag
gccgttcacttccgcaccccaaagactgagtcctctgacaaaatggctaatgaccaagcc
tcaaatctcccaccgaagcaggggccttcgggcaaccagcatccacacgaccccagaact
gcagttggcgtgggaggcaacagcgaaggtcacatcctggtcattgtcatcatcatctcg
gtgggagccttcaccatcatcgtggtggtggtcggggccttcctgtgcacgcggcgcacc
acctcccaccagaaaaaaaagcgagccgcctcgaagtcctcgaacggctcccacaaatac
aaggggaactccaaagacctgaagccccccgatctgtggattcaccacgagaggctggag
ctgaagcccatggacaagtcgccggatcccaacccggtcatgacggaaacgcccatcccc
cgcacctcgcaggacatcacgccagccgacggcggcctggacagcaacccccacctgcag
cagcggcgcaactcctaccgcgggcacgagtcagaggacagcatgtcgacactagcaggc
cgacgagggatgaggcctaaaatgatgatgccttttgacgctcagcctcctcagcctgtg
attagtgctcaccccatccattcccttgataaccatcaccaccattatcacatgggcagc
ctggcgtcgccgacgcgcagctacctctaccaccagggcggcgggcactcccgcccgcac
gcctgcgcctcctccatctcccatctagacagggtggactccacagagtctgtgaggaac
accccttgttcggagcccctccctccggccgccgcctcctcccaggcgtcctgcccctcg
gagatcatggccgaccccgagggcagctaccacggctccaccaccaccgaggaggagggc
agctactccagcaacctgcccccccaccgctcggcccacccgcacgcccacgcccaccca
ctcaagagcttcggcgtgcccaccatcccgaccaccggccacccgacgttcgagtcgccg
gcgctgcccagcacccccctgctcgctcagaccgggcctcccactcacccccatgttgtt
aaaacagcctctagcggaacactagggaggacttggaacccgatggtcgtcacggtgccc
aacgcctccgatgtgcccgagaccagcaagatgctggaagacgtcgacagcgtgcttgcc
tccctcctcccctgcccctcccccgcccctcgcagtaaccctgttcctctccctcagagc
tacgagcccgacgagctgacagaggagatggcccacctcgagggcctcatgaaggacctg
aacgccatcaccacagcgccatga
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