Pseudoliparis swirei (Mariana hadal snailfish): 130192329
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Entry
130192329 CDS
T09868
Symbol
rbbp4
Name
(RefSeq) histone-binding protein RBBP4 isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03082
ATP-dependent chromatin remodeling
pswi03083
Polycomb repressive complex
pswi04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130192329 (rbbp4)
03083 Polycomb repressive complex
130192329 (rbbp4)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
130192329 (rbbp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130192329 (rbbp4)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
130192329 (rbbp4)
Histone modification proteins
HAT complexes
HATB complex
130192329 (rbbp4)
HDAC complexes
Sin3A-HDAC complex
130192329 (rbbp4)
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
130192329 (rbbp4)
PRC2.2
130192329 (rbbp4)
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
130192329 (rbbp4)
Heterochromatin formation proteins
Other heterochromatin formation proteins
130192329 (rbbp4)
Chromatin remodeling factors
NuRD complex
130192329 (rbbp4)
NuRF complex
130192329 (rbbp4)
NuRF complex (fruit fly)
130192329 (rbbp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
EIF3I
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
Beta-prop_WDR19_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_RIG_1st
eIF2A
MIOS_WD40
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
130192329
NCBI-ProteinID:
XP_056268208
LinkDB
All DBs
Position
1:complement(17218881..17223925)
Genome browser
AA seq
436 aa
AA seq
DB search
MSAMADKEAPDVLSSAGAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQW
LPDVFRPEGKDYSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFEASHYDSEKGEFGGFG
SVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPTSEVLVFDYTKHPSKPVDASGECH
PDLRLRGHQKEGYGLSWNPNLSGSLLSASDDHTICLWDISAVPKEGKIVEAKTIFTGHTA
VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFI
LASGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS
KIGEEQSPEDAEDGPPELLFIHGGHTSKISDFSWNPNEPWVICSVSEDNIMQVWQMAENI
YNDEDPEGSTDPEATA
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaatggcggacaaggaagcacccgatgtcctctcttcagcaggagcgtttgac
gatgcggtggaggagagggtgataaacgaagagtacaagatctggaagaaaaacactccc
ttcctgtacgacttggtcatgacccacgccttggagtggcccagcctcacggcccagtgg
ctgcccgacgtcttcaggccagaggggaaggattacagtgtgcaccgactggtgttgggc
actcacacctccgatgagcagaatcacctggtcatcgccagcgttcagttgcccaacgat
gacgcccagttcgaagcctcgcactatgacagcgaaaaaggagagttcggaggcttcggc
tcagtgagtggcaagatcgagatagaaatcaagatcaaccacgaaggagaggtgaaccgt
gctcgctacatgccccagaacccctgcatcatcgccaccaagacccccacctcagaagtg
ctggtgtttgactacaccaagcacccctccaagccagtcgacgcgtctggagagtgtcac
cctgacctgcgtctcagaggccatcagaaagaaggctacggtctctcctggaatccaaat
ctgtccggctctctcctcagtgcgtcagatgaccatacaatctgtctgtgggacataagt
gccgtgccgaaggaggggaagatcgtagaggcgaagacgatcttcaccggtcacaccgcc
gtggtggaagacgtctcctggcacctgctgcacgagtccctctttgggtccgtcgccgac
gaccagaagctcatgatttgggacactcgttcgaacaacacctccaaacccagccacgcg
gtcgacgcccacacggcggaggtcaactgtttgtccttcaacccgtacagcgagttcatc
ctggcatccggctccgcggacaagactgtggctctctgggatttaagaaacttgaaactg
aagctgcattccttcgagtcgcacaaggatgagatcttccaggttcagtggtcgcctcat
aatgagaccatactggcatccagtggaacagaccgccgcctcaacgtctgggacctcagt
aaaatcggagaggagcagtcaccagaagatgcggaggacggcccccctgagcttctgttc
atccacggaggccacacctcgaagatctctgacttctcctggaaccccaacgagccctgg
gtcatctgctcggtgtctgaagacaacatcatgcaagtctggcaaatggctgagaacatc
tacaacgatgaggaccccgagggctcgacggaccccgaggctacggcgtaa
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