Pseudoliparis swirei (Mariana hadal snailfish): 130192342
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Entry
130192342 CDS
T09868
Name
(RefSeq) leucine-rich repeat-containing protein 4C-like
KO
K07523
netrin-G1 ligand
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130192342
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_14
ig
V-set
Ig_2
LRR_9
LRRNT
Ig_6
Syndecan
Motif
Other DBs
NCBI-GeneID:
130192342
NCBI-ProteinID:
XP_056268233
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Position
4:31143992..31145884
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AA seq
630 aa
AA seq
DB search
MLNKMISSLQRQTMRGRRLKGVLSNPLFVLLLTLQILVVAGLVRAQTCPSVCSCSNQFSK
VICTRRSLRDVPDGISTNTRYLNLQDNLIQVIKVDSFKHLRHLEILQLSKNHIRNIEIGA
FNGLASLNTLELFDNRLTIIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISDGAFKDLNNLRYLNLGMCNLKEIPNILPLVRLEELEMSGNQLSVVKPSAF
LGLVNLQKLWMMHTQVQTIERNSFDDLQSLVELNLAHNNLTFLPHDLFTPLRRLERVHLH
HNPWNCNCDILWLSWWLKETVPANTSCCARCHSPAVFKGRYIGELDHSYFQCDFPVIVEP
PSDLNVTEGMAAELKCRTSSLTSISWLTPNGSLVTHGAYKVRLSVLNDGTLNFTTVTMQD
TGTYTCMVSNTAGNISASAVLNVTSVENSGVTYFTTVTVETTETPGDDSQTPLPPFGWVS
STTRATPISTRITERTYTIPVLDPDGEGALNGLDEVMKTTKIIIGCFVAITLMAAVLLVI
FYKMRKQHNQQDPDGPASSMEVITVEEELAGVAAMERHLSLAPLEHYNHYNTYKSAYHHG
PMLGTLHSSATQEPLLIQTCSKDNVQETQI
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgctgaacaaaatgatctcctccctccagcgccagacaatgagaggtcgtaggctgaag
ggggtgctgtccaaccccctctttgtgctgctcttgaccctccagatcttggtggtggct
gggctggtccgcgctcagacctgcccctccgtctgctcatgcagcaaccagttcagcaaa
gtcatatgcacccgccggagcctacgggacgtcccggacggcatctccaccaacactcgc
tacctgaacctccaggacaacctcatccaggtcatcaaggtggacagtttcaaacacctg
cgccatctggagatccttcagctgagcaagaaccacatccgcaacattgaaatcggcgcc
ttcaatggactcgccagtctcaacaccttggagctcttcgataatcggcttacgataatc
cccaacggcgcatttgagtacttgtccaagctaaaggaattatggctgcggaacaacccc
atcgaaagtataccatcttatgccttcaaccgagtcccctcgctccgaaggctggatcta
ggtgagctcaaacgtctctcctacatttccgatggcgccttcaaggacttgaataacctg
cgctacctgaacctgggaatgtgcaacctcaaggagatccccaacatcttacccttggtc
aggctcgaggagctagaaatgtcaggaaaccagctctctgtcgtcaagcccagcgcattt
ttaggattagtgaacctccagaagctgtggatgatgcacacccaggtccagaccatcgag
aggaattccttcgatgacctccagtcactggtggagctcaaccttgctcacaacaacctt
accttcctaccgcatgacctcttcacgccgttgcgtcgcctggagcgggtccacctccac
cacaacccttggaactgcaactgtgacatcctgtggctcagctggtggctgaaggagacg
gtgccggccaacaccagctgctgcgcccggtgccattcgcccgccgtctttaaaggccgc
tacattggggagttggaccacagctacttccagtgtgacttccccgtcatcgtggagccg
cccagcgacttgaacgtgacggagggcatggccgccgagctcaaatgccgcacgagctcg
ctgacatccatcagctggctgacgccaaacggctcgctggtgacacacggggcttacaag
gtgcgtctgtcggtgctcaatgacgggacgctgaactttaccaccgtcacgatgcaggac
accgggacctacacctgtatggtgagcaacacggcgggcaacatttccgcctccgccgtg
cttaacgtcacttctgtggaaaacagcggggtgacctattttaccacagtcaccgtggag
accaccgagaccccgggggacgatagccaaacgccgcttcccccattcggctgggtgtcc
tccacgacgagagctactcccatttcgacaaggatcacagagcggacttacacaattcca
gttcttgatccggacggagagggcgccctcaatggcctggacgaggtgatgaaaaccacc
aagatcatcatcggctgcttcgtggccatcacgctcatggccgccgttctgctggtcatt
ttctacaagatgaggaagcagcacaaccagcaggaccccgacggccccgcgtcctccatg
gaggtgataacagtcgaagaagagctcgccggggtcgccgccatggagaggcacctgtcg
ctggcccctctggagcactacaaccactacaacacctacaagagcgcctaccaccacggt
ccgatgctcggtaccctacacagctcggccacgcaggaacctttactgattcagacctgc
tcaaaagacaatgtacaggagacccaaatctga
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