Pseudoliparis swirei (Mariana hadal snailfish): 130192366
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Entry
130192366 CDS
T09868
Name
(RefSeq) paired amphipathic helix protein Sin3a-like
KO
K11644
paired amphipathic helix protein Sin3a
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
130192366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130192366
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
130192366
REST complex
130192366
Heterochromatin formation proteins
Other heterochromatin formation proteins
130192366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
130192366
NCBI-ProteinID:
XP_056268277
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All DBs
Position
4:32265448..32288618
Genome browser
AA seq
1313 aa
AA seq
DB search
MKRRVEDQEPIFAPQQQQTRRPPVQGIADGFQHRALAPAPSGIEAVADNMQPSTGIQYSL
PQGYQVPIMPQSTSGHGHNNAAPHVVAHAHALAVQAQGAAAVHGHGHPPAPMTSTQGQQF
QRLKVEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVINRVSQLFKGHPDL
IMGFNTFLPPGYKIEIQTNDLVNVTTPGQIHYITPHGISVQNIPMSAAASGPPLSHNQHQ
SLPPAGPHAAITAAGNNNNNDTATTTTTSTTPPTPAQPAPNKTSKPVQSPAHTPTSQTNP
SIPSYASPRSPSAQSHTPVSSTPSGGGPPLQNNQPVEFNHAINYVNKIKNRFQGQPDIYK
AFLEILHTYQKEQRNAKEAAGNYTPSLTEQEVYTQVARLFKNQEDLLSEFGQFLPDANST
MLLGKTTPDRAESVRNDHGGTVKRPLLSSKQRLSQNGLPIRRPAGVGAPPVKKKPKLLGK
DHGMTELGKHSTSTETMFFEKVKKALRSSEAYDNFLRCLHIFNQEVISRSELVQLVIPFL
GNFPELFTWFKNFLGYRESSHGELSHAESLPKERALEGIAMEIDYASCKRLGSSYRALPK
SYQQPKCTGRTPLCREVLNDTWVSFPSWSEDSTFVSSKKSQYEEHIYRCEDERFELDVVL
EANLSTIRALETVQRRMSRMSAEEQLRFKLDNSMGGSSEVIHRKAIQRIYGDKAHDIIDG
LKKNPAASVPIVLKRLKMKEEEWREAQRSFNKIWREQNEKYYLKSLDHQGINFKQNDTKV
LRSKTLLNEIEMLYDDRQERASEDAATPPPSGPHMTQSYDDSQILEDAAALIIHHVKRQV
GIQKEDKYKIKQIIHHFIPDMLFARRGELSDVEEEDADDEEEEDDEDAADGPKKSNGLPG
GSPAKAKLFFGGAAAAQKLRGADNAYNMFFVNNYWYIFLRLHHILCSRLLRIYGQAERQI
EVDAREREWEREVLGLKREKSEHPAIQLKMKEPMDVDVEDYYSVFLEMVRNLLDGNMEPT
QYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHLVTDDVCSRVTDVYLSEGANKATGGSL
STQTARAPAEGAYQRKVEQLMSDENCFKLMFVKSRGAVSLSMELLDTEEENSDEPADAER
WSVYVSRYLNSDSASPELREHLSQKPVFLPRNLRRIRRCQRGWERLQWERMNAAPSDGPQ
DAGSGGPKMACMFNLNSYKMVYVCKSEDYMYRHTALTRAHQSQQRVNTRLHRRFHAWLDV
WAAEHVTADMSAASRQWLMGERRDGLLPCSTTCCPEVLHYIGVNKYRVKYRTL
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcgcgtggaggaccaggaacccatatttgccccccagcaacagcaaacgcgt
cgccccccagtccaaggcatcgcagacggcttccagcaccgggccctcgccccggccccc
tcggggatcgaggccgtggcggacaacatgcagccgtccaccggcatccagtattctctc
ccccaaggctaccaggtgcctataatgccccagagcacgagcggccacggccacaacaac
gccgctcctcacgtggtcgcccacgctcacgccctggcggtgcaggcacagggcgccgcg
gcggtccacgggcacggccatccacctgcacccatgacctccacccaaggacagcagttt
cagcgactgaaggttgaagacgccctgtcctatctggatcaagtgaagctgcagtttggg
aatcagccacaagtttataatgacttccttgatattatgaaagagttcaaatcacagagc
atcgacacccctggagtcatcaaccgcgtgtcgcagctcttcaagggccacccggacctc
atcatgggcttcaacaccttcctgccgcccggctacaagatcgagatccagaccaacgac
ctggtgaacgtgaccacgccgggccagatccactacatcacgccccacggcatctcggtt
cagaacatcccgatgagcgcggcggcgtccggcccgccgctgagccacaaccagcaccag
agtctgccgccggccggcccgcacgccgccatcaccgccgccggcaacaacaacaacaac
gacaccgcaacaaccaccaccacctccaccaccccaccgacccccgcccaacctgctccg
aacaaaaccagcaagccggtccagtctccggcccacacgcccaccagccagaccaacccg
tccatcccgtcctacgcctcgccgcgctcgccctcggcccagtcccacactcccgtgagc
agcacgccgtccggcggcgggccgcctctgcagaacaaccagcccgtggagttcaaccac
gccataaactacgtcaacaagatcaagaaccgcttccagggtcagccggacatctacaaa
gccttcctggaaatcctccacacgtaccagaaggaacagcggaacgctaaagaggcagca
ggcaactacaccccgtcgctcaccgagcaggaggtctacactcaggtggcgagactcttc
aagaaccaggaggacctgctgtcggagttcggacagttcctgcccgacgccaacagcacg
atgctgctgggcaagacgacgcccgacagggccgagtcggtgcgcaacgaccacggcggc
acggtgaagaggccgttgctgagcagcaagcagcggctgagccagaacggtctgccaatc
aggagacccgctggagtgggagccccgcctgtcaagaaaaagcccaaactattggggaag
gaccacggcatgaccgaactcggcaaacacagcaccagcaccgaaaccatgttcttcgag
aaggtgaagaaggctctgcggagctccgaggcgtacgacaacttcctgcggtgtcttcac
atcttcaaccaggaagtgatctctcgctccgagctggtccagctggtcatcccgttcctc
ggaaatttcccggagctcttcacgtggtttaagaacttcctgggctaccgggagtcgagc
cacggggagttgagccacgccgagagtttgcccaaggagcgcgccctggagggcatcgcc
atggagatcgactacgcctcctgcaagcggctgggctccagctaccgggcgctgcccaag
agctaccagcagcccaagtgcaccggcaggacgccactgtgccgggaggtcctgaacgac
acgtgggtctcgtttccatcgtggtccgaagattcgacgttcgtgagctccaagaagtct
caatacgaggagcacatttacagatgtgaggacgagcgctttgagctggacgtggtgctg
gaggccaacctctccacgatacgagccctggagacggtgcagcggaggatgtcgcgcatg
tcggccgaggagcagctgcgcttcaagctggacaactcgatgggcggctcctcggaggtc
atccaccgcaaggccatccagaggatatacggggacaaggcgcacgacatcatcgacggg
ctcaagaagaacccggcggcgtcggttcccatcgtgctgaaaagattaaaaatgaaagag
gaggagtggagagaagcccagagaagcttcaacaaaatctggcgggagcagaacgagaag
tattacctgaagtcactggaccaccagggcatcaacttcaagcagaatgacaccaaagtg
ttgcgttcaaagaccctgctcaacgaaatcgagatgctgtacgatgaccgccaggagcga
gcgtcggaggacgccgccacgccgccgccgagcggcccgcacatgacccagagctacgac
gacagccagatcctggaggacgccgccgccctcatcatccaccacgtcaagcggcaggtg
ggcatccagaaggaggacaagtacaagatcaagcagatcatccaccacttcatccccgac
atgctgttcgcgcggcgcggcgagctctccgacgtcgaggaggaggacgccgacgacgag
gaggaggaggacgacgaggacgccgccgacggtcccaagaagtccaacggcctgccgggc
ggcagccccgccaaggccaagctgttcttcggcggcgcggcggcggcccagaagctgcgc
ggcgccgacaacgcctacaacatgttcttcgtcaacaactactggtacatcttcctgcgc
ctgcaccacatcctgtgctcccgcctgctgcgcatctacggccaggcggagcggcagatc
gaggtggacgcccgcgagcgcgagtgggagagggaggtgctcggcctgaagagggagaag
agcgaacaccccgccatccagctgaagatgaaggagcccatggacgtggacgtggaggat
tactactctgtgttcctggagatggttcgcaacctgctggacgggaacatggagcccact
cagtacgaggactccctgagggagatgttcaccatccacgcctacatcgccttcaccatg
gacaagctcatccagagcatcgtccggcagctgcagcacctggtgaccgacgacgtgtgc
tcgcgggtcacggacgtgtacctgagcgagggcgccaacaaggccaccggcggctcgctg
tccacgcagacggcccgggcgccggccgagggcgcctaccagcgcaaagtggagcagctg
atgtcggacgagaactgcttcaagctgatgttcgtgaagagccgcggggccgtcagtctg
tccatggagctgctggacacggaggaggagaactccgacgagccggcggacgccgagcgg
tggtccgtctacgtgagccggtacctgaactcggactccgcgtccccggagctgcgtgag
catctttcccagaagcccgtgttcctccccaggaacttgcggcgcatccggcggtgccag
cgaggatgggagcgcctgcagtgggagaggatgaacgcggcgccgtcggacgggccacag
gacgccggcagcggagggccgaagatggcgtgcatgttcaacctcaactcctacaagatg
gtgtacgtctgcaagtcggaggactacatgtaccggcacacggcgctcaccagggcccac
cagtcccagcagcgggtcaacacgcggctgcaccgacgcttccacgcctggctggacgtc
tgggccgcggagcacgtgacggccgacatgtccgccgccagccgccaatggctgatgggc
gagcggcgagacggcctgctgccctgcagcaccacctgctgcccggaggtcctccactac
atcggcgtcaacaagtaccgggtgaagtacagaactctgtag
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