Pseudoliparis swirei (Mariana hadal snailfish): 130192373
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Entry
130192373 CDS
T09868
Symbol
cdh16
Name
(RefSeq) cadherin-17
KO
K06810
cadherin 16, KSP-cadherin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
130192373 (cdh16)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130192373 (cdh16)
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Major cadherins
130192373 (cdh16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_CLSTN
Cadherin_CELSR2_9th
Ig_Cad99C_N
Piwi
REC-like_halo
Motif
Other DBs
NCBI-GeneID:
130192373
NCBI-ProteinID:
XP_056268289
LinkDB
All DBs
Position
4:complement(15241476..15275658)
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AA seq
730 aa
AA seq
DB search
MQVSFRTSEHRQSFTVEVCVIDKNDNVPTFIEESMRGSVQLGLLKGIPFMQVEALDRDDR
ITAHAELRFILMEQTPRIPSSQMFFINSITGEVSLTAEGSSTLDPDMCGRYKLSVMVKDM
AGKANAFFSSGIVTVEVTGNTWASPDPVRLQENLPGPYPIPISQVKWSGSQAEYSLEGEF
PEMLFTISRGGVIYLNAPLDRETQDQFQISIVVERPDGREIAKPVELRVMVGDANDNRPT
FPQAQYHTVVKELSTRGTEILTVQAADNDDPKTDNVRIFYRLVGQIPESPRALFRVDRDS
GVISVQADSMEGTAPQYTLTITAEDAKGLNSSCTLVVTVQDENNNPPLFSQHEYGPFHIP
EDAAVGTTVTAVLAGDADVRGGDSWQVDYQLESGNEEEVFTLMTDKQTNEVSLILSKVLD
FERESEYILVISAQNPVALVRGRYGPASTATVSIYVDDVNEGPILSQSHYDVTVREGEEP
GRVIATIRGYDPDSHPIRYSLQGDTKKYFSIGKYSGELKTVQALDREENSTYTMEVIAVD
GRNSSLSASTLVTVQILDVNDNSPVLVGDYSWKYLCTPRWEDQALVLASRDSDGPQHGGR
LNFSLRSDATVRRNWKLTPINDTHTNLSLNIQYLAPEVYTVPFTISDSSSPPRSTFINLP
VTVCPCNVRGNCKIAAKQLQGMPTIQSAVGILLGTFGVIGTILIVVFLRLSYQNPKRPSK
TNQEQIPLKM
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtgtccttcagaacgtcagagcaccgccagagcttcactgtcgaagtgtgtgtc
atcgacaagaacgacaacgtgcccactttcatagaggagagcatgagaggcagcgtgcag
ctcgggcttctcaaaggaatcccattcatgcaggtggaggcactggatcgggatgaccgc
atcaccgcccacgccgagctgcggttcatcctcatggaacagacacccaggattccctcc
agccaaatgttcttcatcaactccatcactggagaagtttccctcaccgcggaaggatcc
tccactcttgacccggacatgtgcggccggtacaagctctcagtgatggtgaaggacatg
gcggggaaggcgaacgctttcttctccagcggcatcgttaccgtcgaggtgacgggaaac
acctgggcatcgcccgaccctgtccgactccaggagaacctcccaggcccctacccgatc
cccatctcacaggtcaaatggagtgggagccaggcagagtacagtctggagggggagttt
ccagagatgctcttcaccatcagcagaggaggagtcatttatctcaacgctcctctggac
agagagacacaggaccagttccagatcagcattgtggttgagcgtccagatggcagagaa
attgccaagcctgtggaattgagggtgatggtgggcgacgccaatgataacagacccacc
ttcccacaggcacagtaccatactgtggtaaaggaactgtccactcgagggactgaaatc
ctgacagtgcaggcggccgataacgacgatcccaagacggacaacgtgcggatattctac
cgtttagtcggtcaaattccagagagtcctcgcgccctcttccgagtggaccgtgactca
ggtgtcatctctgtccaagcagacagtatggagggaacggcgcctcaatacactctcacc
atcactgctgaggatgctaaaggtctaaacagttcatgcaccctggtcgtgacggtacag
gatgagaacaacaacccaccactcttctcccaacacgagtatgggccctttcacattcca
gaggacgctgcagtgggcaccactgtaacagctgtgctggctggggatgcagatgtccga
ggaggagacagctggcaggtggactaccagttagagtctggaaacgaagaggaggtcttt
acattgatgacagacaagcagaccaatgaggtttccctcatcctttcaaaggtcttggac
tttgagcgtgagagtgagtatatcctcgtgatcagtgctcagaacccagtggctctggtc
cgtggtcgttacggcccagcatccacggcaacagtctccatctatgtcgacgatgtgaat
gaaggccctatcttgtctcaaagccattatgatgtgactgtcagagagggcgaggaacca
ggacgggttatcgccaccatcagaggctacgaccctgattctcacccaatcagatattct
cttcaaggggacaccaagaaatatttctcaataggaaagtattctggtgaactaaagact
gtgcaggccttggacagagaggagaacagcacgtacaccatggaggtcattgcagtggat
ggccgaaactcatccttgtctgcgtccaccctggtgacggtccaaatcctggatgtgaac
gacaacagtccagtactggtgggagactattcctggaagtacctgtgtacgcctcgctgg
gaggaccaagctctggtgctggcctcacgggacagtgatgggccacagcatggaggacga
ctgaacttctccctgcgcagcgatgccacagtccgtcgtaactggaagcttacacctatt
aatgatactcacaccaacctgtccttaaacatacagtacctggcccctgaggtctacact
gtgccctttaccatctctgacagcagctctcctcccaggagcaccttcataaacttgcca
gtgacagtgtgtccctgcaacgtacgagggaactgcaaaatcgctgccaagcagttgcag
ggcatgccaacgattcagtctgcagtgggaattctgctcggcacctttggagtcatcggg
actattctcatcgttgtgtttttgagactctcctaccagaaccccaaacggccgagcaaa
actaaccaggagcaaattcccctgaagatgtaa
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