Pseudoliparis swirei (Mariana hadal snailfish): 130192417
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Entry
130192417 CDS
T09868
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130192417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130192417
03036 Chromosome and associated proteins [BR:
pswi03036
]
130192417
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130192417
Coactivators
SAGA/TFTC/STAGA complex
130192417
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
130192417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
130192417
NCBI-ProteinID:
XP_056268374
LinkDB
All DBs
Position
4:21427614..21516220
Genome browser
AA seq
1080 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLAGQSNLAGKADENGGAGSPAPANHHLGK
TLPAPVGTTTLEQQQQQGRCNKPDMRQEINSKDASPTKTVTSPSSDSTAFFDEPPAASAT
RAKTTSTSSSQSHGASITTLTGSGATTLTASAPNNISTASGRGSEVSPGSCGTSAEEASP
PRKRMSTPRRSASARIKSLNGATVTTTTRISNTAVAESASSLDAGATTPNSARPATSSIN
SSTFTLSNAAGQSAVALDRGTPTIALHRLPSHIVASIAHNGSGTSVSALVQQGAGAGATS
TATTATTATTTCPSASQGNHSSRSSKIDDCQSNIVMSSQSASVNSVINTVSAVVTTTTTT
TAAATTSTAVTQPSSSAPAAACVAAVAASTACGTGPTASVTTAVSMVRPTLPSPTPAAAT
AAQTQPLPGLAAPPRIVAPQLIVRPPQQQTTIQLPPGFTIPPGMVLVRTELGQLVMVPQQ
ALAQAQAQAQAQAQNNISPRPATPTTGTSFKVTTPQSPVTSQTTRQCPLTSAKMVPSPSP
TPSSPALQTSSSSSSSSCSCPALRPKVPAAPIVAVAAPQQTPVVAAAPQAPAQAASQPTQ
PPQMGIASNPGGPIVSQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKSLVQDLLDA
KIDPEEFTSRLQTELKSSPQPYLVPFLKKSLPALRLSLLSSQHSVTPQQGVKPAPAAPPP
VFAAGPAVRVRHPNSVSFTTGAGALPAGTPGHAAGVGIKTVGNVGGHVRMPVVITQSIRT
PGTMGKGGLIQAGRSPVGLAAVQISGYQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEE
SARILATNSELVGTHIRSCKDEAFLHTGLLHRRILETAKKFGVTEVPMEAVMFISHAAQS
RLRTVVEKVTTIAQHRLDSCKEDECYEQSAEVRSQLRFFEQLERMEKQRKDEQEREILLK
AAKSRSRQEDPEQARLKQKAKEMQQQELAQVRQREANFTALAAIGPRKKCKVDSPGTTPS
GTEVSGSTAGSPSSSSSPSSSSRQYARQRVTRVNLRDLIFYMEQERETAHSLLLYRALLK
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccccctggaagatatgctgttttcagaggtggacgaaaaagcc
gtgagcgacctagtgggttcactggagtcccagctcgccggacaaagcaacctagcaggc
aaagcagacgagaacggaggcgctggctcaccggcccccgctaaccatcacttagggaaa
acgctaccagctccagtgggtacaacaacactagaacaacaacaacaacaaggacggtgt
aataaacccgacatgcgccaggagatcaactcaaaggacgccagcccgactaaaactgtc
acgtctccttcctcggactccaccgcttttttcgacgagccgcccgccgcctcggcaacc
cgcgcgaaaaccacgagcaccagcagctcacaatcacatggagcatccatcacaacactg
actgggtctggcgcgacaactttgacggcgtccgcgccgaacaacatcagcaccgcatcc
ggccgggggtctgaggtcagcccgggctcgtgcgggacgtcggcggaggaagctagcccg
ccgaggaaacgcatgagcacgccgcgaaggagcgcctcggctcggataaagagtttgaac
ggtgcgacggtgacgacgacgacgaggatcagcaacaccgcggtggctgagagcgcgagc
tcgctggacgccggcgcgacgacgccgaactccgctcgacccgcgacgtcctcgatcaac
agctcgacgttcaccctctcgaacgccgcgggtcagtcggctgtcgctctggaccggggg
actcccaccattgcgctgcacagactcccgagccacattgtcgcgagcatagcccacaac
ggcagcgggaccagtgtttcggccttggtccagcagggcgctggcgcaggagccacttcc
accgccaccaccgccaccaccgccaccaccacctgcccctcggcctcacaggggaaccac
agctcccggtcctccaaaatagacgactgtcagtccaacattgtaatgtcaagccagtct
gctagtgtaaactccgtaataaacactgtctccgccgttgtcacgacaacaaccaccaca
accgcagcagccacaacgtccacagcggtgacccagccttcgagctccgctccggccgcc
gcttgtgtcgcagcggtggcagcgagtaccgcgtgcggaaccggtccaaccgcgtcggtg
acgaccgctgtcagcatggtcaggcccacgctgccctccccaacgcccgccgcggccacc
gccgcgcagactcaaccccttcccggcctcgcagcgcctccgaggatcgtagcccctcaa
ctgatcgtcagaccgcctcagcagcagacgaccattcagctgcccccggggttcaccatc
ccaccggggatggtgctggtgcgcacagagctgggccagctagtgatggttcctcagcag
gctctggcccaggcccaggcccaggctcaggcccaggcccagaacaacatctctccaagg
cctgccaccccgacaacaggaacttccttcaaagtaacaacgcctcagtctcccgtgacc
tctcagaccaccaggcagtgccctttgacctcggccaagatggtaccgtctccatctccc
acgccgtctagcccggccctgcagacctcctcctcctcttcttcttcttcttgctcctgt
cctgctctccgcccaaaggtccctgcggcgccgatcgtggcagtggcggctccgcagcag
acccccgtggtggcggcggccccccaagccccggcccaggcggcctcccagccgacgcag
cctcctcagatgggcatcgcctcgaaccccggaggtcccatcgtgtcccaggaaatgcag
gagaatgtcaagaagtgcaagaacttcctggccacgctcattaagctggcgtcccacaac
tctccgtcccccgagacctccaagaacgtcaagtctctggttcaggacttgctggatgcc
aagattgatccggaggagtttaccagccggctgcagactgagctcaagtcgtctccacag
ccgtacctggtgccctttctcaagaagagcctcccggccctgaggctgtccctgctgagc
agtcagcactccgtgaccccgcagcagggagtcaaaccggcgcccgccgccccccctccc
gtcttcgcggccgggccagctgtccgcgtgcgccaccccaacagcgtcagcttcacgacg
ggtgccggcgcgctgcccgccgggacgccaggacatgcagctggcgtgggtatcaagacg
gtaggcaacgtcgggggccatgtccggatgcccgtggtgatcacgcagtccatcagaacg
ccaggcacaatggggaagggaggcctcatccaagcgggcagaagtcccgtgggcctggct
gctgttcagatctctgggtatcagaaaaacaagctcaacgaccccggaggaggttctttc
agggacgatgacgacatcaacgacgtggcctccatggccggggtgaacctgaacgaggag
agcgcgagaatactcgccaccaactctgagctagtgggaacgcatattcgctcatgcaaa
gatgaggcctttctccacacgggcctgctccatcggcgaattctggaaacggccaagaag
ttcggggtcacagaggtcccaatggaggcggtgatgttcatctcacacgccgcacagtca
cgacttcgaaccgtggtagaaaaggttacgaccatcgcgcagcaccgactggactcctgc
aaagaagacgagtgctacgagcagtcggcagaggttcgctcccagctgcgcttcttcgag
cagctggagaggatggagaagcagaggaaggacgagcaggagagggagatcctgttgaag
gccgcgaaaagtcgctccaggcaagaggacccagagcaagctcggctgaaacagaaagcc
aaggagatgcagcaacaggaactggctcaggtcaggcagcgggaggccaacttcacagca
ctagccgccattggaccccgcaagaagtgcaaagtggattcaccggggacaaccccatca
gggaccgaggtttcgggcagcacggcgggctccccgtccagctcctccagcccgtccagc
tcatcgcggcagtacgcgcggcagcgcgtcacccgcgtcaacctcagggacttaattttc
tacatggagcaggagagagagaccgcccactccctcctcctctaccgcgccctgctcaag
tag
DBGET
integrated database retrieval system
