Pseudoliparis swirei (Mariana hadal snailfish): 130192462
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Entry
130192462 CDS
T09868
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03420
Nucleotide excision repair
pswi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130192462 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
130192462 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130192462 (ddb1)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130192462 (ddb1)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
130192462 (ddb1)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
130192462 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
130192462 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
130192462
NCBI-ProteinID:
XP_056268446
LinkDB
All DBs
Position
4:32049169..32085345
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDLGSYVGVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGKE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHKQLIQITSGSVRLVL
QESKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILTGELKQISTTEMEHEVAC
LDITPLGEGGGESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGSTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggtaacagcccagaaacccacggcggtgaacgcctgcgtcaca
ggccacttcacctccgcggaggacctcaacctgctcatcgccaagaacacccggctggag
atctatgtggtgacggcggaggggctgcggcccgtcaaggaggtgggcatgtacgggaag
atcgccgtcatggagctcttcaggccaaagggtgagagcaaagacctgctgttcatcctc
acgtccaagtacaacgcctgcatcctggagtacaagcagaacggggacagcatcgacatc
atcacccgcgcccacggcaacgtccaggatcgcatcggccggccgtcggaaacgggcatc
atcggcatcgtggaccccgagtgccgcatgatcggcctgcggctgtacgacgggctgttc
aaggtcatccccctggaccgggacaaccgcgagctcaaggccttcaacatccgcctggag
gagctgcaggtcatcgacgtccacttcctgtacggctgccaggccccgacggtctgcttc
atctaccaggacccccaaggacgccacgtgaagacctacgaggtttccctgagggagaag
gagttcaacaaggggccctggaaacaggagaacgtggaggcggaggcctccatggtcatc
ccagtgccggagccatttgggggcgctataatcataggacaggagtccatcacctaccac
aacggagacaagtacctggccatcgccccgccgaccatcaagcaaagcaccatcgtgtgc
cacaaccgcgtcgaccccaacggctcccgctacctgctgggcgacatggagggccgcctg
ttcatgctgctgctggagaaggaggagcttatggacggcacggtggcgctcaaagacctg
cacgtggagctgctgggggagacgtccatcgccgagtgtctgacctacctggataacggc
gttgtgttcgtgggctccaggctgggagactcccagttggtgaagctcaacgtggacagc
aacgacctgggctcctacgtcggggtgatggagaccttcaccaacctggggcccatcgtg
gacatgtgcgtggtggacctggagaggcagggccagggccagctggtgacgtgctccggt
gcgttcaaggagggctcccttcggatcattcgcaacggcatcgggattcacgagcacgcc
agcatcgacctgccgggaatcaaaggcttgtggccgctccgctccgaagccggcaaggag
acggacgacatgctggtgctgtctttcgtgggtcagacacgagtgttaatgctgagcggc
gaggaagtggaggagaccgaacttcccggcttcgtggacaaccagcagacgttttactgc
ggcaacgtggcgcacaagcaactcattcagatcacgtcgggctcggtgcgcctggtgctc
caggagagcaaagcgctggtgagcgagtggaaggagccgcagggccgcaacatcagcgtg
gccgcctgcaaccacacccaggtggtgctggccgtgggccgagccctctactacctgcag
atcctgaccggggagctcaaacagatcagcaccacggagatggagcacgaggtggcctgc
ctggacatcacgcccctgggggagggcggcggcgagtcgccgctgtgcgccgtgggcctc
tggaccgacatctcagcccgggtgctcaaactgccgtgcttcacagccctgcacaaggaa
atgctgggcggagagatcatccctcgctccatcctcatgaccaccttcgaaggcagctac
tacctgctgtgcgcgctgggagacggagcactcttctacttcggtctggacctgcagacc
ggcgccctgagcgagcgcaagaaggtgaccctgggcacccagcccaccgtgctgcggacc
ttccggtcgctctccacctccaacgtgttcgcctgctccgaccggcccaccgtcatctac
tcctccaaccacaagctggtgttctccaacgtcaacctgaaggaggtcaactacatgtgc
cccctcaactccgagggctaccccgacagtctggctctggccaacaacagcacgctgacc
atcggcaccatcgacgagatccagaagctccacatccggaccgtccccctctacgagtcg
cccaggcggatctgttaccaggaggtgtcccaatgcttcggggttctctccagccgggtg
gagatccaggacgtgagcggctccacgtccgccgtgcggcccagcgcgagcactcaggct
ctctccagcagcgtgagctccagcaagctcttccccagcagcacttctccccacgagacg
tcctttggtgaagaggtggaggtccacagtctgctggtggtggaccagcacaccttcgaa
gtcctccacgcccaccagttcctgcccagtgagtacgccctcagcatggtgtcgtgccgc
ctgggcaaagacccgtcggtgtacttcatcgtcggcaccgccatggtgtacccggaggag
gcggagcctaagcaggggcgcatcatcgtcttccactacaccgacggtaagctgcagacg
gtggccgagaaggaggtgaagggagccgtctactccatggtggagttcaacggaaaactg
ctggccagcatcaacagcacagtgcgtctatacgagtggacggcggagaaggagctgagg
accgagtgcaaccactacaacaacatcatggcgctgtacctgaagaccaagggggacttc
atcctggtgggggacctgatgaggtccgtcctgctgctggcctacaagcccatggagggc
aactttgaagagatcgcgcgtgacttcaatcccaactggatgagtgccgtggaaatcctg
gacgacgacaacttcctgggggcggagaacgccttcaacctgttcgtgtgccagaaggac
agcgcggccaccacggacgaggagcggcagcacctgcaggaggtcggggtgttccacctg
ggggagttcgtgaacgtcttctgccacggctcgctggtgctgcagaacctcggcgagagc
tccacgcccacccagggctccgtgctcttcggcaccgttaacggcatgatcggtctggtg
acgtccctgtcagagggctggtacagcctcctcctggatctgcagaaccgcctcaacaag
gtcatcaagagcgtcggcaagatcgagcacagcttctggaggtcgttccacacggagcgt
aagacggagcaggccacgggcttcatcgacggggacctgatcgagagcttcctggacctg
ggccgggccaagatgcaggaggtcgtcagcactctgcagatcgacgacggcagcggcatg
aagcgcgaggccacggtggacgaggtcatcaagatcgtggaggagctgacgaggatccac
taa
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