Pseudoliparis swirei (Mariana hadal snailfish): 130192692
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Entry
130192692 CDS
T09868
Symbol
si:ch211-186j3.6
Name
(RefSeq) neural-cadherin
KO
K27892
neural-cadherin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130192692 (si:ch211-186j3.6)
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Cadherin related
130192692 (si:ch211-186j3.6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Cadherin_CELSR2_9th
Ig_Shg
CADH_Y-type_LIR
EGF
Cadherin_4
RET_CLD1
hEGF
Big_9
GspA_SrpA_N
Motif
Other DBs
NCBI-GeneID:
130192692
NCBI-ProteinID:
XP_056268772
LinkDB
All DBs
Position
4:complement(23593232..23920737)
Genome browser
AA seq
2929 aa
AA seq
DB search
MIWVAFLPFLVSCAQGNGTAELVPFFHGHVFENSSPGSRVNGLSVPLKRLNSQRLCGTEE
FAAHFKLLGVGSENFRVFAHHKRGHVLLKTSGVLDREERAEYALSLGLCCGQCAGLSWET
DEESPAVTEVASIKVDVLDTNDHQPTFPGAEVKLSLDDATALRTTVYTVTARDDDSGKNA
ELIYFVLPKNGSFYAVPKTGDILLVDSILGLGEPIKFEVFARDRGWPPRTSQSVAVEISP
RQWPVAPNPQTGKRKLTSQIKVPVRRSRSVLESESPVFINVSEDAGIGSVVMNLGPARFQ
SATFELLEPDVENSPVSVSRDSGGIVISRRLDRETEPLVEITIKVQDKRGTEWYLVRVEL
TVTDVNDNIPEWSMVPAPYLAVVSPDAPAGELVYKLQAEDGDEGNNGEVEYFLSDGGDGR
FEVDRKNGQVRTTGLPLQREREYLLTVLAADRLGSRSAPVVVSVVAGARPPQFTNVSFTI
AIPENTPEGQSFLVTPAVSFQKKPIGYSLLINPSSLFSISAETGEISLTHPIDYESDQHR
YLLLVRASEGLDSMSSAAESPINADKPAPSRLCIPPAPTGVSANDCDSEENAELTYYTVS
PDFTISPHGTIFPAGPLDYERHNHLYEFVVMAVDKGEVPRTGTTTVRIRMANVNDEAPEF
SQHIYRTFVSEDAGPNTLVATVLAKDPDGDGITYEITTGNEEGNFIIDSKKGLIRLRSSP
PPHLQGVEYVLNVTAADDNASGGSHALSSTALVIVGVDDVNNNKPVFKKCQQYRESTSVL
ENQPAGTFVLQVHAVDADEGSNGRVTYGFMHKYSTVPAFSIHPETGVIVTARKFDRERQR
EYAVTVTATDQAADPLIGICQLNILILDHNDNSPKFENIRYEYFLREDTMIGTSFLRVAA
HDDDFGTNAAITYSMSSEQPEYLRVNPMTGWVYVNQPISQRTYITREIVATDGGNRSSSV
ELAVTITNVKNQPPQWDKDSYSMVIPENTVRDTAIVTIKATSPLGDPRVTYNLEDGMVPE
TNMPVRFYLTPNREDGSASILVAEPLDYETARNFMLRVRAQNVAAVPLAAFTTVYINVTD
VNDNVPFFTSSIYEASVTEGAESGTLVFQVLANDLDLGLNGKISYSLLEDRSGDHQYFRV
DPELGFIYSKAVFDRETKSSYLLEVQSTDGWESARPGKRGQPNSDTAYVRVFISDVNDNK
PAFAQASYEVDVDEDADVGFAILTVSANDGDEGGNAKLRYQITSGNTGGVFDVEPEVGTI
FIAQPLDYEQNKRYKLHVLASDGKWEDYATVSVNVVNKNDEAPVFTVNEYYGSVTEELDG
SPVFVLQVTASDPDKDADQEALRYSLHGQGAESEFIIDEVTGKIYAQRTLDREERAVWRF
VVLATDEGGEGLTGFTDVIINVWDINDNAPVFTCAPSCHGDVAENSVVGTSVMEMTATDL
DDSAVGQNAVLSYRIMGSLDATNIEVGGVPTFSEMFTVNAVTGTISVAMGGLDREQVESY
LLVVEARDGGGMTGTGTATVQIKDVNDHAPRFTDHSCLARISENAEPNAEVLELMAEDRD
TGENAQLTFSVVAGDQEQKFYMVSHKQEQRGTLRLKKRLDYERHSEQRFNLTLKVEDLDF
SSLLHCVVDVEDYNDHAPVFIPQLLALAPLPEDINVGTSVARLVASDSDSGQNRDITYSL
TEDSDPDGLFTIDQSGVLSVARPLDRERISQHYLVVIATDHGVPPLTGTATVQLPLLDVN
DNGPEFEAAYYPIVFENVAGPQVVRLNQTSTLLRAVDRDSPENGPPFHFTVTSQYRHGND
FYLQDNLNGTATLTALRTFDRERQKEFLIPITMSDSGHPAKTVTSTLTVTIGDQNDHAHV
AGEKTIFINSHRGRMPTTVLGKVYSPDPDDWDNKTYVFEGNVASYFILNKRTGFLIIKEN
APPDIYQFQVRVSDGVWPDAVSTVIVHVRELRDEAIYNAGSLRLADITATEFIELRGKQR
SRYELLVDFLSEMLSLPPDNVNIFSLMDVKERMLDVRFAVRGGPSFLQPEKIHGYVAAHK
QKLQSFMQVSVSQVRVDECPSSECAGAGGCTNVLNVRDTPTVVDCGTMSLVSVTVESTAV
CSCPGREQSHQPCTAYPRNPCFNGGVCVDTQHGYRCQCPAQFEGPECQQNKHSFQGNGYA
WFPPMMPCFESHVSLEFITDVADGLLLYSGPLAQLQAWDHEDFMAIELIDGTPTLKINHG
SGTVVLQLPGNVNVADRRWHRLDVRSNSKEVRFTLDRCSGAAVMEMEGLGSWLTTEDHSS
CEVTGVTPNADRHLNMSQVLQLGGVNEDIPYVYPQLQHKHFTGCIRDLIVDSKLYDLGSP
ADSQSSSPGCLTTDGSCVNMGYPSCGHRGRCHGEWGSFSCQCVPGYTGHQCEEEAPEYSF
DGHSHAHYQLASPLPARRTWVQVLVRTRKHGSTILNLISKELSEYIRLEIFQGLLCVFYN
LGDGDYNLTLPTYRLDNGEWHEVFLDRHDNEMILRLDGGGGQREVTGSRGRSREIIIDPT
VVMLGNNFPSGINKSFQGCMRDVRLNGRYMPLDSQPRDGVSQVSVQGLSPGCSSDSCKRN
QCSAPFTCVDLWRVHECRCPPGHMVRVNGTRKSCVYTLCATRPCHRGTCVAQSPSKFTCH
CTQGYRGRHCETTLAIYREDVGLSFSSLFAICICFMALLVLLLGIFLYTRWRSYKGLKEG
VYHVSAHHDGWEDIRENVLNYDEEGGGEEDQNAYDMAELQKSLQPSPAQSVQYCRSRALH
HPLPPLHHHHHHHLLHQAAPAPPSAQPLDPLSRTSISTTLPPSAASTSSAAASLRRDVPP
TRLPAQGQTLPSQLARRSLSFSSQDLARYLCEIIRDADQHPDAGPFDSLQVFSTEGGGSP
AGSLSSFSSAGLDGGGGGAEGRREETLGEWGPRFEKLRALYERAEASDL
NT seq
8790 nt
NT seq
+upstream
nt +downstream
nt
atgatttgggtcgcgtttctgccttttttggtttcgtgcgcacagggcaacggaaccgcc
gaactggtgccgttctttcacgggcatgtatttgagaactcgtctccgggctcccgggtc
aacggattgagcgtcccgttaaagcggctcaactcgcagaggctgtgcggtaccgaggaa
tttgcggcgcactttaaactcctcggagtcgggagcgagaatttccgcgtttttgcgcac
cacaaaagggggcatgttttgttgaagacttctggggttctggatcgggaggagcgggct
gaatacgcgctgagtctcggtttgtgttgcgggcaatgcgcgggactctcctgggaaacg
gacgaggaatctccggctgtcaccgaggtggcctccatcaaggtggacgtcctggacacc
aacgaccatcagcccaccttccctggtgccgaagtgaagctgagcctggatgatgccact
gcgctccgcacgacggtctacacagtcaccgcgcgggacgacgacagcggcaagaacgcg
gagctcatctacttcgtcctgcccaaaaatgggagtttttacgcggtgcccaaaaccgga
gacattctcctggtggactccatcctcggtctgggtgagccgattaagtttgaagtgttt
gcccgggaccgcgggtggccgcctcgcacgagccagagcgtagctgtggagatcagtcca
cggcaatggccagtggcgccgaatccccaaaccggcaaaaggaaactaacatctcaaatt
aaagtgccagtgagaaggtccaggtcagtgctggaatcggaaagtcccgttttcatcaac
gtgtccgaagacgcagggattggttccgtggtgatgaacctgggcccggcaaggtttcag
tctgcaacgtttgagctgctggagcccgacgtggagaactccccggtcagcgtgagccgg
gacagcgggggtattgtcatatcacgaaggctggaccgggagactgagcctctggtggag
atcaccatcaaagttcaggataaaagaggtacagagtggtacttggtccgagtggagttg
accgtgacggatgtcaatgataatatcccagaatggagcatggttcctgccccctacctg
gctgtggtttcccctgatgcccctgcgggggagctggtctacaagctccaagctgaggac
ggggatgaaggcaacaacggcgaagtggagtacttcctgtctgacggcggtgatggtcgt
tttgaagtggacaggaaaaacggccaggtacgaaccaccggccttccgctgcagcgggaa
agggagtacctgctgacggtgttggcggccgaccggctgggcagccgcagcgcccccgtc
gtcgtgtcagtggtggccggagctcggccgccgcagttcaccaacgtgtccttcaccatc
gccataccggaaaacacgcctgaaggacagtccttcctggtcacacctgcagtgtccttc
cagaagaaaccaatcggctacagcctcctcatcaatcccagcagcctcttctccatctca
gcagagactggtgaaatcagcctgacccaccctatcgactacgagagcgaccagcaccgg
tacctgctgctggtgcgagccagcgagggcctggacagcatgagtagtgcagcggagagt
cccatcaacgcagacaagccagcaccttcccgactctgcatccctcctgcccccacagga
gtgtccgccaatgactgtgactccgaagagaatgcagagctgacctattacactgtgagt
ccagacttcaccatctccccccacgggaccatcttccctgcggggcctctagactacgag
aggcacaaccacctgtacgagtttgtggtgatggcggttgacaagggggaggtccctcgc
accggcacaactaccgtacgcattcgaatggccaacgtcaacgacgaagcgcccgagttc
tcccagcacatataccggaccttcgtctcagaggatgcgggacccaacacactagttgcc
acggtgctggcgaaggaccctgatggggacgggatcacgtatgagatcaccacgggaaac
gaggagggcaactttatcattgacagcaaaaaaggtttgatccgactgcgctccagcccg
ccccctcacctccagggcgtggaatacgtcctcaatgtcacagcggcggacgacaatgcc
tcaggcggatcgcatgctttgtcctccacagccctcgtcatcgtgggggtggacgacgtg
aacaacaacaagcccgtctttaagaagtgtcagcagtaccgagagagcacgtcagtcctg
gagaaccaaccagcgggaacgttcgttctgcaggttcacgctgtggatgctgacgagggc
tccaatggcagggtcacatacggcttcatgcacaaatactccactgtgcccgcattcagt
atccacccggagaccggagtaattgtgacagccaggaaatttgatcgtgaacgccaacga
gagtacgcagtgacggtgactgccactgaccaggcggctgacccgctgattggcatttgt
cagctcaacattctcatcctggaccataacgacaacagtcccaagtttgagaacatccga
tatgagtacttccttcgcgaggacacaatgatcgggacgagcttcttgcgggtggcggcc
catgacgatgactttggcaccaacgcagccatcacgtactccatgtccagcgaacagcca
gagtatctcagggtcaaccccatgacgggctgggtgtatgtcaaccagcccatttcccag
aggacctacatcaccagggaaattgtggctactgacggtgggaacaggagcagttcggtg
gagctggccgtcaccattaccaacgtgaagaaccagcctccacagtgggacaaggacagc
tacagcatggtcataccagaaaacaccgtccgagacacagccatcgtgaccatcaaagcc
acctccccgcttggggatcccagggtgacttacaacctggaggacggcatggtccccgag
accaacatgccagttcgcttctacttaacccccaaccgagaagacggctccgcctctatc
cttgtggcggagcccctggactacgagacggccaggaacttcatgctgcgggttcgagcg
cagaatgtcgccgctgtaccactggcggccttcaccacggtctacatcaatgtcacggat
gtaaatgacaacgtcccatttttcacttcctccatctacgaggcctcggtcacagaaggg
gccgaatcaggaactttggttttccaggttttagccaatgacctcgacttgggtctcaat
ggcaagatctcatactcactgctggaggatcgtagtggagaccaccagtacttccgcgtc
gacccagagctgggattcatctactctaaggctgtgtttgaccgcgagacaaagagctcc
tacctgttggaagttcagtccacggatggctgggagtcggcacggcccggcaaacgtgga
cagcctaactctgacacagcatatgttcgcgttttcatcagcgacgtgaacgacaacaag
ccagcgttcgcacaggcgtcttatgaagttgatgttgatgaagacgctgacgtaggcttc
gccatcctcaccgtcagtgccaacgacggggacgaaggtggaaatgcaaagctgcgctac
cagatcacatccgggaacacgggaggggtctttgatgtggaaccagaggtgggcacaatc
ttcatcgcccagcctctagactacgaacagaacaaaaggtacaagcttcatgtcctggct
tcagatgggaagtgggaggattacgcaacagtgtcggtgaacgtggtgaacaagaatgac
gaggcgccggtgttcaccgttaacgagtactacggcagcgtgacggaggagctggatggc
tctccggtgtttgtgttgcaggtaacggcgtctgacccggataaggatgctgaccaggag
gctttgcgttactctctccacggccagggtgccgagagtgaattcataattgatgaggtc
acaggcaagatctacgctcagcggacattggaccgcgaggagcgcgccgtgtggcgtttt
gtcgtcttggccacggacgagggtggcgaaggtctgacgggcttcaccgatgtcatcatc
aatgtgtgggacatcaatgacaatgcacccgtcttcacctgtgcccccagttgtcacgga
gacgtggccgagaactcggtcgtggggacgtctgtgatggagatgacagccacggacctg
gatgactcggctgtgggtcagaacgccgtgctctcttacaggattatgggtagtttagat
gccacaaacatcgaggtgggtggagtgcctaccttctcggaaatgttcactgtcaacgcc
gtaacagggaccatctctgtggccatgggcggtctggaccgggagcaggtcgagtcttac
ctcctggttgttgaggccagagatggtggagggatgacgggaacgggaactgcgaccgta
caaattaaggatgtgaacgatcatgctccaagattcactgatcactcctgcctggcaagg
atctctgagaatgcagagcccaatgcagaggtcctggagctcatggcagaggacagagac
actggagaaaatgcccagctgacctttagtgttgtggctggagaccaagagcagaagttc
tatatggtcagccacaagcaggagcagcgcggcaccctgaggctgaagaaacgtctggac
tatgaacgacacagcgagcagaggtttaacctcacactgaaggttgaggacctggacttc
tccagccttcttcactgtgtggtggacgtggaggactataacgaccatgctcctgtcttc
attccacaactcctggctctcgccccactacctgaagacatcaacgtgggaaccagtgtg
gcacgtttggtggccagcgactccgattcaggccagaaccgcgacatcacctatagcctt
acggaggactccgatcccgatgggctgttcaccattgaccagtctggtgtactctctgta
gctcgtcctctggatcgggagaggatatcgcagcattacctagttgtcatagcgactgat
catggggttccacctctaacaggcaccgccacagtccagctgccactgttggatgtaaac
gataatggaccagagtttgaggcagcatactacccaattgtctttgagaatgtggccgga
ccacaggtggtacggttgaaccaaacatcaaccctcctccgagctgtggaccgggactct
ccagagaatggcccgcccttccacttcaccgtcacctcccagtatcgccacggcaacgat
ttctacctccaggacaacctaaatggcacggcgacactcacagccctgaggacctttgac
cgcgagcggcagaaagagttcctcatccccattaccatgagcgacagcggccatccagcc
aaaacggtgaccagcaccctcacagtgaccatcggcgaccaaaacgaccacgcacatgtg
gcgggggagaagaccattttcatcaatagtcacagaggccgtatgccaacaacggtgctg
ggaaaggtctactctcctgaccctgatgactgggacaacaagacgtacgtctttgaagga
aacgtggcaagttacttcatcctgaacaagcgaacaggcttcctgatcattaaagaaaac
gccccacccgacatctatcagttccaggtccgtgtgtccgatggagtgtggccagacgcc
gtctctactgtcattgtgcatgtgagggagcttcgtgacgaggccatctacaacgcaggg
tctctccgcctggcagacatcacagcaacggagttcattgagctgagaggaaagcagcgg
agccgctacgagctgctggtggacttcctgtccgagatgctctcccttccacctgataat
gtgaacatcttcagcctcatggatgtgaaggagcgaatgctggatgtccgcttcgccgtg
cgcggcgggccctccttcctccagcccgagaaaatccatggatatgtggccgcccacaaa
caaaagctgcagtcgttcatgcaggtcagcgtgtcccaggtgcgggtggacgagtgtcca
agctcagagtgtgccggggccggcggctgcaccaacgttctgaacgtaagggacacgccc
acggtcgtggattgcgggaccatgagtcttgtatcggtgacggtggagtccaccgccgtc
tgctcctgcccgggtagagagcagtcccatcagccctgcaccgcgtatcccagaaacccc
tgcttcaatggcggtgtatgcgtggacactcagcatggctacaggtgccaatgcccagct
cagttcgaagggcctgagtgccagcagaacaagcacagtttccaaggaaacggctatgcc
tggttccctcccatgatgccttgttttgagagccacgtgtcactggagttcatcacggac
gtggccgatggactgctgctgtacagcggacccttggcccagctgcaggcctgggaccat
gaggacttcatggcaatagagctaatagatgggacccccaccttgaaaatcaaccatggc
tctggcacagtggtgctacagttgccaggcaacgtgaacgtggcagacagacggtggcat
cggctggatgtccgcagcaacagcaaggaagtgcgctttaccctggatcgctgctcgggg
gcagcggtgatggaaatggaaggcctcggcagctggctgaccaccgaggaccactcctcc
tgtgaggtgacgggcgttacgcccaacgcagacagacacctgaacatgagccaggtgctc
cagctgggcggcgtgaacgaggacatcccctacgtctacccgcagcttcagcacaagcat
ttcaccggctgcatccgcgacctcatcgtggacagcaagctgtatgatttgggctccccg
gccgactcgcaatccagctctccgggctgcctgaccaccgacggcagctgtgtcaacatg
ggctacccctcctgcggccaccggggtcgctgtcacggcgagtggggctccttcagctgc
cagtgtgtgccgggatacacaggacaccagtgtgaagaggaggccccggagtattccttt
gatggccacagtcatgcgcattaccagctggcatccccgctgccggcccggaggacgtgg
gttcaggtcctggttcgtacccgcaaacacggcagcaccatcctaaatctcatctccaag
gagctgagtgaatatatacgactagagatcttccagggcctcctctgcgttttctacaac
ctcggggacggtgactacaacctgaccctgcccacctatcgcctcgacaacggcgaatgg
cacgaggtcttcctcgatcggcacgacaacgagatgattctgcgactggacggcggcggg
gggcagcgggaggtcaccgggtcgcggggccgaagccgagaaatcatcattgaccccact
gtggtgatgctggggaacaacttcccctctggaatcaacaagagcttccagggctgcatg
agggacgtacgcctcaacggtcgctacatgcctctggacagccagccgcgagatggggtt
tctcaggtcagcgtacaaggcctctcccccgggtgctcgtctgactcctgcaaaaggaac
cagtgtagcgcccccttcacctgtgttgacttgtggagagtgcacgaatgcagatgtcct
cctggccacatggtccgtgtgaacgggaccaggaagtcctgtgtctacaccctctgtgcg
actcggccttgccaccgggggacctgtgtggcgcagtcaccctccaaattcacctgccac
tgcacgcagggttacagaggacgccactgcgagacgacgctggccatctatcgggaggac
gtgggcctgagcttcagctccctgtttgccatctgcatctgcttcatggccctgctcgtg
ctgctgctgggcattttcctctacactcgctggaggagctacaaagggctgaaggagggc
gtttaccacgtctccgcccaccacgacggctgggaggacatccgagagaacgtcctcaac
tatgacgaggagggcggtggggaggaggaccagaatgcctatgacatggcggagctgcag
aagtccctccagccgagcccggcccagtcggtccagtactgccgctccagagccctgcac
caccctctcccacccctccaccatcaccatcaccaccaccttctccaccaggcggcaccg
gcaccgccctccgctcagccgctggaccccctcagccggacatccatctccaccacgctg
cccccctcggcagcctccacctcctccgccgccgccagcctccgcagggacgtgcccccc
accaggctcccggcccagggccagaccctcccctcccagctcgcgcggcgctccctgtcc
ttctccagccaggacctggcgcgctacctgtgcgagatcatccgcgacgccgaccagcac
ccggacgcggggcccttcgactccctgcaggtgttctccaccgagggggggggctcgccc
gccggttctctcagctccttcagctcggcggggttggacggagggggcggcggggcggag
gggaggagggaggagacgctcggggagtggggcccccgctttgagaagctgcgggcgctg
tacgagcgggccgaggccagcgacctgtga
DBGET
integrated database retrieval system
